SOLTUB.AGRIA.G00000029394

Description : F-box SKIP23-like protein (DUF295)

Gene families : OG_02_0019448 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000029394
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_63

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	IEA	AHRD
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	AHRD
BP	GO:0006109	regulation of carbohydrate metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009266	response to temperature stimulus	None	Extended
BP	GO:0009408	response to heat	IEA	AHRD
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009890	negative regulation of biosynthetic process	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0010565	regulation of cellular ketone metabolic process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	AHRD
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0030656	regulation of vitamin metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031324	negative regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031327	negative regulation of cellular biosynthetic process	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043255	regulation of carbohydrate biosynthetic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0045912	negative regulation of carbohydrate metabolic process	None	Extended
BP	GO:0046137	negative regulation of vitamin metabolic process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0062012	regulation of small molecule metabolic process	None	Extended
BP	GO:0062014	negative regulation of small molecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:2000082	regulation of L-ascorbic acid biosynthetic process	None	Extended
BP	GO:2000083	negative regulation of L-ascorbic acid biosynthetic process	IEA	AHRD

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Type	GO Term	Name	Evidence	Source
BP	GO:0000038	very long-chain fatty acid metabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0000322	storage vacuole	IEP	Predict GO terms from Neighborhoods
CC	GO:0000325	plant-type vacuole	IEP	Predict GO terms from Neighborhoods
CC	GO:0000326	protein storage vacuole	IEP	Predict GO terms from Neighborhoods
BP	GO:0001934	positive regulation of protein phosphorylation	IEP	Predict GO terms from Neighborhoods
MF	GO:0003743	translation initiation factor activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004620	phospholipase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005794	Golgi apparatus	IEP	Predict GO terms from Neighborhoods
CC	GO:0005923	bicellular tight junction	IEP	Predict GO terms from Neighborhoods
CC	GO:0005935	cellular bud neck	IEP	Predict GO terms from Neighborhoods
BP	GO:0005996	monosaccharide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006004	fucose metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006446	regulation of translational initiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006643	membrane lipid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006644	phospholipid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006650	glycerophospholipid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006664	glycolipid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006874	cellular calcium ion homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0006900	vesicle budding from membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0006914	autophagy	IEP	Predict GO terms from Neighborhoods
BP	GO:0007155	cell adhesion	IEP	Predict GO terms from Neighborhoods
BP	GO:0007163	establishment or maintenance of cell polarity	IEP	Predict GO terms from Neighborhoods
BP	GO:0007283	spermatogenesis	IEP	Predict GO terms from Neighborhoods
MF	GO:0008017	microtubule binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0008135	translation factor activity, RNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0008360	regulation of cell shape	IEP	Predict GO terms from Neighborhoods
BP	GO:0008654	phospholipid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009605	response to external stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0009615	response to virus	IEP	Predict GO terms from Neighborhoods
BP	GO:0009987	cellular process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010214	seed coat development	IEP	Predict GO terms from Neighborhoods
BP	GO:0010288	response to lead ion	IEP	Predict GO terms from Neighborhoods
BP	GO:0010395	rhamnogalacturonan I metabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0014069	postsynaptic density	IEP	Predict GO terms from Neighborhoods
CC	GO:0015630	microtubule cytoskeleton	IEP	Predict GO terms from Neighborhoods
BP	GO:0015692	lead ion transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0016032	viral process	IEP	Predict GO terms from Neighborhoods
BP	GO:0016036	cellular response to phosphate starvation	IEP	Predict GO terms from Neighborhoods
BP	GO:0016236	macroautophagy	IEP	Predict GO terms from Neighborhoods
CC	GO:0016281	eukaryotic translation initiation factor 4F complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0016289	CoA hydrolase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016298	lipase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016790	thiolester hydrolase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016799	hydrolase activity, hydrolyzing N-glycosyl compounds	IEP	Predict GO terms from Neighborhoods
BP	GO:0019048	modulation by virus of host process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019318	hexose metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019374	galactolipid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019637	organophosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0022406	membrane docking	IEP	Predict GO terms from Neighborhoods
BP	GO:0030968	endoplasmic reticulum unfolded protein response	IEP	Predict GO terms from Neighborhoods
BP	GO:0031175	neuron projection development	IEP	Predict GO terms from Neighborhoods
CC	GO:0031965	nuclear membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0031984	organelle subcompartment	IEP	Predict GO terms from Neighborhoods
BP	GO:0032386	regulation of intracellular transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0032387	negative regulation of intracellular transport	IEP	Predict GO terms from Neighborhoods
CC	GO:0032541	cortical endoplasmic reticulum	IEP	Predict GO terms from Neighborhoods
MF	GO:0033149	FFAT motif binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0033157	regulation of intracellular protein transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0034250	positive regulation of cellular amide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0034976	response to endoplasmic reticulum stress	IEP	Predict GO terms from Neighborhoods
BP	GO:0035821	modulation of process of another organism	IEP	Predict GO terms from Neighborhoods
BP	GO:0036498	IRE1-mediated unfolded protein response	IEP	Predict GO terms from Neighborhoods
BP	GO:0040020	regulation of meiotic nuclear division	IEP	Predict GO terms from Neighborhoods
MF	GO:0042171	lysophosphatidic acid acyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0042306	regulation of protein import into nucleus	IEP	Predict GO terms from Neighborhoods
BP	GO:0042308	negative regulation of protein import into nucleus	IEP	Predict GO terms from Neighborhoods
BP	GO:0042327	positive regulation of phosphorylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0044003	modulation by symbiont of host process	IEP	Predict GO terms from Neighborhoods
BP	GO:0044038	cell wall macromolecule biosynthetic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0044232	organelle membrane contact site	IEP	Predict GO terms from Neighborhoods
BP	GO:0044237	cellular metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0044788	modulation by host of viral process	IEP	Predict GO terms from Neighborhoods
BP	GO:0044790	suppression of viral release by host	IEP	Predict GO terms from Neighborhoods
BP	GO:0044791	obsolete positive regulation by host of viral release from host cell	IEP	Predict GO terms from Neighborhoods
BP	GO:0044793	negative regulation by host of viral process	IEP	Predict GO terms from Neighborhoods
BP	GO:0044794	positive regulation by host of viral process	IEP	Predict GO terms from Neighborhoods
BP	GO:0044827	modulation by host of viral genome replication	IEP	Predict GO terms from Neighborhoods
BP	GO:0044828	negative regulation by host of viral genome replication	IEP	Predict GO terms from Neighborhoods
BP	GO:0044829	positive regulation by host of viral genome replication	IEP	Predict GO terms from Neighborhoods
BP	GO:0044830	modulation by host of viral RNA genome replication	IEP	Predict GO terms from Neighborhoods
BP	GO:0045069	regulation of viral genome replication	IEP	Predict GO terms from Neighborhoods
BP	GO:0045070	positive regulation of viral genome replication	IEP	Predict GO terms from Neighborhoods
MF	GO:0045182	translation regulator activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0045489	pectin biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0045727	positive regulation of translation	IEP	Predict GO terms from Neighborhoods
BP	GO:0045836	positive regulation of meiotic nuclear division	IEP	Predict GO terms from Neighborhoods
BP	GO:0046467	membrane lipid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046470	phosphatidylcholine metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046719	regulation by virus of viral protein levels in host cell	IEP	Predict GO terms from Neighborhoods
BP	GO:0046725	negative regulation by virus of viral protein levels in host cell	IEP	Predict GO terms from Neighborhoods
BP	GO:0046822	regulation of nucleocytoplasmic transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0046823	negative regulation of nucleocytoplasmic transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0046937	phytochelatin metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046938	phytochelatin biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0047617	acyl-CoA hydrolase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0048232	male gamete generation	IEP	Predict GO terms from Neighborhoods
MF	GO:0048487	beta-tubulin binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0048524	positive regulation of viral process	IEP	Predict GO terms from Neighborhoods
BP	GO:0048525	negative regulation of viral process	IEP	Predict GO terms from Neighborhoods
BP	GO:0050792	regulation of viral process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051051	negative regulation of transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0051224	negative regulation of protein transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0051445	regulation of meiotic cell cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:0051446	positive regulation of meiotic cell cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:0051643	endoplasmic reticulum localization	IEP	Predict GO terms from Neighborhoods
BP	GO:0051701	biological process involved in interaction with host	IEP	Predict GO terms from Neighborhoods
BP	GO:0051716	cellular response to stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0051783	regulation of nuclear division	IEP	Predict GO terms from Neighborhoods
BP	GO:0051785	positive regulation of nuclear division	IEP	Predict GO terms from Neighborhoods
BP	GO:0051851	modulation by host of symbiont process	IEP	Predict GO terms from Neighborhoods
BP	GO:0052325	cell wall pectin biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0052546	cell wall pectin metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0055074	calcium ion homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0060631	regulation of meiosis I	IEP	Predict GO terms from Neighborhoods
BP	GO:0060903	positive regulation of meiosis I	IEP	Predict GO terms from Neighborhoods
BP	GO:0061709	reticulophagy	IEP	Predict GO terms from Neighborhoods
BP	GO:0061817	endoplasmic reticulum-plasma membrane tethering	IEP	Predict GO terms from Neighborhoods
BP	GO:0061912	selective autophagy	IEP	Predict GO terms from Neighborhoods
BP	GO:0061919	process utilizing autophagic mechanism	IEP	Predict GO terms from Neighborhoods
CC	GO:0070160	tight junction	IEP	Predict GO terms from Neighborhoods
BP	GO:0070589	cellular component macromolecule biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0070592	cell wall polysaccharide biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0071248	cellular response to metal ion	IEP	Predict GO terms from Neighborhoods
BP	GO:0071284	cellular response to lead ion	IEP	Predict GO terms from Neighborhoods
MF	GO:0071617	lysophospholipid acyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0071618	lysophosphatidylethanolamine acyltransferase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0071782	endoplasmic reticulum tubular network	IEP	Predict GO terms from Neighborhoods
BP	GO:0071963	establishment or maintenance of cell polarity regulating cell shape	IEP	Predict GO terms from Neighborhoods
BP	GO:0072503	cellular divalent inorganic cation homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0072507	divalent inorganic cation homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0090068	positive regulation of cell cycle process	IEP	Predict GO terms from Neighborhoods
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0090114	COPII-coated vesicle budding	IEP	Predict GO terms from Neighborhoods
BP	GO:0090158	endoplasmic reticulum membrane organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0090317	negative regulation of intracellular protein transport	IEP	Predict GO terms from Neighborhoods
CC	GO:0098827	endoplasmic reticulum subcompartment	IEP	Predict GO terms from Neighborhoods
CC	GO:0099572	postsynaptic specialization	IEP	Predict GO terms from Neighborhoods
BP	GO:0140056	organelle localization by membrane tethering	IEP	Predict GO terms from Neighborhoods
CC	GO:0140268	endoplasmic reticulum-plasma membrane contact site	IEP	Predict GO terms from Neighborhoods
BP	GO:1900180	regulation of protein localization to nucleus	IEP	Predict GO terms from Neighborhoods
BP	GO:1900181	negative regulation of protein localization to nucleus	IEP	Predict GO terms from Neighborhoods
BP	GO:1903008	organelle disassembly	IEP	Predict GO terms from Neighborhoods
BP	GO:1903509	liposaccharide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1903828	negative regulation of protein localization	IEP	Predict GO terms from Neighborhoods
BP	GO:1903900	regulation of viral life cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:1904950	negative regulation of establishment of protein localization	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR005174	DUF295	298	355
IPR036047	F-box-like_dom_sf	2	54

External Links

No external refs found!

SOLTUB.AGRIA.G00000029394

Expression Profile

Co-expression Networks

Functional Annotation