SOLTUB.AGRIA.G00000029553

Description : Ribosomal protein S3

Gene families : OG_02_0001603 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000029553
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_192

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	AHRD
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005739	mitochondrion	IEA	AHRD
BP	GO:0006412	translation	IEA	AHRD
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
CC	GO:0009507	chloroplast	IEA	AHRD
CC	GO:0009536	plastid	None	Extended
BP	GO:0009987	cellular process	None	Extended
CC	GO:0015935	small ribosomal subunit	IEA	AHRD
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019843	rRNA binding	IEA	AHRD
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044391	ribosomal subunit	None	Extended
BP	GO:0046677	response to antibiotic	IEA	AHRD
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0003954	NADH dehydrogenase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0003955	NAD(P)H dehydrogenase (quinone) activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005524	ATP binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0005743	mitochondrial inner membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0005747	mitochondrial respiratory chain complex I	IEP	Predict GO terms from Neighborhoods
CC	GO:0005912	adherens junction	IEP	Predict GO terms from Neighborhoods
BP	GO:0006120	mitochondrial electron transport, NADH to ubiquinone	IEP	Predict GO terms from Neighborhoods
BP	GO:0006901	vesicle coating	IEP	Predict GO terms from Neighborhoods
BP	GO:0007020	microtubule nucleation	IEP	Predict GO terms from Neighborhoods
BP	GO:0007446	imaginal disc growth	IEP	Predict GO terms from Neighborhoods
BP	GO:0007555	regulation of ecdysteroid secretion	IEP	Predict GO terms from Neighborhoods
BP	GO:0007622	rhythmic behavior	IEP	Predict GO terms from Neighborhoods
MF	GO:0008137	NADH dehydrogenase (ubiquinone) activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0009055	electron transfer activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0009532	plastid stroma	IEP	Predict GO terms from Neighborhoods
CC	GO:0009570	chloroplast stroma	IEP	Predict GO terms from Neighborhoods
CC	GO:0009575	chromoplast stroma	IEP	Predict GO terms from Neighborhoods
MF	GO:0015399	primary active transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015453	oxidoreduction-driven active transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016651	oxidoreductase activity, acting on NAD(P)H	IEP	Predict GO terms from Neighborhoods
MF	GO:0016655	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	IEP	Predict GO terms from Neighborhoods
BP	GO:0017004	cytochrome complex assembly	IEP	Predict GO terms from Neighborhoods
MF	GO:0017076	purine nucleotide binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0019646	aerobic electron transport chain	IEP	Predict GO terms from Neighborhoods
CC	GO:0019866	organelle inner membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0022900	electron transport chain	IEP	Predict GO terms from Neighborhoods
CC	GO:0030426	growth cone	IEP	Predict GO terms from Neighborhoods
MF	GO:0030554	adenyl nucleotide binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0030838	positive regulation of actin filament polymerization	IEP	Predict GO terms from Neighborhoods
CC	GO:0030964	NADH dehydrogenase complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0031966	mitochondrial membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0032091	negative regulation of protein binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0032273	positive regulation of protein polymerization	IEP	Predict GO terms from Neighborhoods
MF	GO:0032553	ribonucleotide binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0032555	purine ribonucleotide binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0033116	endoplasmic reticulum-Golgi intermediate compartment membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0034067	protein localization to Golgi apparatus	IEP	Predict GO terms from Neighborhoods
BP	GO:0035330	regulation of hippo signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0035332	positive regulation of hippo signaling	IEP	Predict GO terms from Neighborhoods
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0036064	ciliary basal body	IEP	Predict GO terms from Neighborhoods
MF	GO:0043168	anion binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0044060	regulation of endocrine process	IEP	Predict GO terms from Neighborhoods
BP	GO:0044380	protein localization to cytoskeleton	IEP	Predict GO terms from Neighborhoods
BP	GO:0045036	protein targeting to chloroplast	IEP	Predict GO terms from Neighborhoods
BP	GO:0045037	protein import into chloroplast stroma	IEP	Predict GO terms from Neighborhoods
CC	GO:0045271	respiratory chain complex I	IEP	Predict GO terms from Neighborhoods
BP	GO:0045475	locomotor rhythm	IEP	Predict GO terms from Neighborhoods
BP	GO:0045666	positive regulation of neuron differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0045879	negative regulation of smoothened signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0045880	positive regulation of smoothened signaling pathway	IEP	Predict GO terms from Neighborhoods
MF	GO:0048038	quinone binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0048148	behavioral response to cocaine	IEP	Predict GO terms from Neighborhoods
BP	GO:0048208	COPII vesicle coating	IEP	Predict GO terms from Neighborhoods
BP	GO:0048512	circadian behavior	IEP	Predict GO terms from Neighborhoods
BP	GO:0048670	regulation of collateral sprouting	IEP	Predict GO terms from Neighborhoods
MF	GO:0050136	NADH dehydrogenase (quinone) activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0050321	tau-protein kinase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0061512	protein localization to cilium	IEP	Predict GO terms from Neighborhoods
CC	GO:0062091	Ycf2/FtsHi complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0070469	respirasome	IEP	Predict GO terms from Neighborhoods
BP	GO:0071539	protein localization to centrosome	IEP	Predict GO terms from Neighborhoods
BP	GO:0072596	establishment of protein localization to chloroplast	IEP	Predict GO terms from Neighborhoods
BP	GO:0072598	protein localization to chloroplast	IEP	Predict GO terms from Neighborhoods
BP	GO:0072698	protein localization to microtubule cytoskeleton	IEP	Predict GO terms from Neighborhoods
BP	GO:0090175	regulation of establishment of planar polarity	IEP	Predict GO terms from Neighborhoods
MF	GO:0097367	carbohydrate derivative binding	IEP	Predict GO terms from Neighborhoods
MF	GO:1901265	nucleoside phosphate binding	IEP	Predict GO terms from Neighborhoods
BP	GO:1902003	regulation of amyloid-beta formation	IEP	Predict GO terms from Neighborhoods
BP	GO:1902004	positive regulation of amyloid-beta formation	IEP	Predict GO terms from Neighborhoods
BP	GO:1902991	regulation of amyloid precursor protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1902993	positive regulation of amyloid precursor protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1904338	regulation of dopaminergic neuron differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:1904340	positive regulation of dopaminergic neuron differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:1904956	regulation of midbrain dopaminergic neuron differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:1904958	positive regulation of midbrain dopaminergic neuron differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:1905424	regulation of Wnt-mediated midbrain dopaminergic neuron differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:1905426	positive regulation of Wnt-mediated midbrain dopaminergic neuron differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:1905508	protein localization to microtubule organizing center	IEP	Predict GO terms from Neighborhoods
BP	GO:1905515	non-motile cilium assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:2000027	regulation of animal organ morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:2000050	regulation of non-canonical Wnt signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:2000052	positive regulation of non-canonical Wnt signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:2000831	regulation of steroid hormone secretion	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR012340	NA-bd_OB-fold	260	343
IPR005679	Ribosomal_S12_bac	258	343
IPR006032	Ribosomal_S12/S23	261	340

External Links

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SOLTUB.AGRIA.G00000029553

Expression Profile

Co-expression Networks

Functional Annotation