Jump to ...
Description : Unknown protein
Jump to ...
Description : Pentatricopeptide repeat-containing family protein
Gene families : OG_02_0020740 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000029833 | |
| Cluster | HCCA Clusters (HRR 50 & PCC 0.5): Cluster_34 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000959 | mitochondrial RNA metabolic process | None | Extended |
| BP | GO:0000963 | mitochondrial RNA processing | IEA | AHRD |
| BP | GO:0003002 | regionalization | None | Extended |
| BP | GO:0003006 | developmental process involved in reproduction | None | Extended |
| MF | GO:0003674 | molecular_function | None | Extended |
| MF | GO:0003676 | nucleic acid binding | None | Extended |
| MF | GO:0003723 | RNA binding | None | Extended |
| MF | GO:0003729 | mRNA binding | IEA | AHRD |
| MF | GO:0003824 | catalytic activity | None | Extended |
| MF | GO:0004518 | nuclease activity | None | Extended |
| MF | GO:0004519 | endonuclease activity | IEA | AHRD |
| MF | GO:0005488 | binding | None | Extended |
| MF | GO:0005515 | protein binding | IEA | AHRD |
| CC | GO:0005575 | cellular_component | None | Extended |
| CC | GO:0005739 | mitochondrion | IEA | AHRD |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | None | Extended |
| BP | GO:0006396 | RNA processing | None | Extended |
| BP | GO:0006725 | cellular aromatic compound metabolic process | None | Extended |
| BP | GO:0006807 | nitrogen compound metabolic process | None | Extended |
| BP | GO:0007389 | pattern specification process | None | Extended |
| BP | GO:0008150 | biological_process | None | Extended |
| BP | GO:0008152 | metabolic process | None | Extended |
| BP | GO:0009451 | RNA modification | None | Extended |
| CC | GO:0009507 | chloroplast | IEA | AHRD |
| CC | GO:0009536 | plastid | None | Extended |
| BP | GO:0009888 | tissue development | None | Extended |
| BP | GO:0009987 | cellular process | None | Extended |
| BP | GO:0010051 | xylem and phloem pattern formation | None | Extended |
| BP | GO:0010087 | phloem or xylem histogenesis | IEA | AHRD |
| BP | GO:0010214 | seed coat development | IEA | AHRD |
| BP | GO:0010305 | leaf vascular tissue pattern formation | IEA | AHRD |
| BP | GO:0010467 | gene expression | None | Extended |
| BP | GO:0010588 | cotyledon vascular tissue pattern formation | IEA | AHRD |
| BP | GO:0016070 | RNA metabolic process | None | Extended |
| BP | GO:0016071 | mRNA metabolic process | None | Extended |
| BP | GO:0016553 | base conversion or substitution editing | None | Extended |
| BP | GO:0016554 | cytidine to uridine editing | IEA | AHRD |
| BP | GO:0016556 | mRNA modification | None | Extended |
| MF | GO:0016787 | hydrolase activity | None | Extended |
| MF | GO:0016788 | hydrolase activity, acting on ester bonds | None | Extended |
| BP | GO:0022414 | reproductive process | None | Extended |
| BP | GO:0031425 | chloroplast RNA processing | IEA | AHRD |
| BP | GO:0032501 | multicellular organismal process | None | Extended |
| BP | GO:0032502 | developmental process | None | Extended |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | None | Extended |
| MF | GO:0043167 | ion binding | None | Extended |
| MF | GO:0043169 | cation binding | None | Extended |
| BP | GO:0043170 | macromolecule metabolic process | None | Extended |
| CC | GO:0043226 | organelle | None | Extended |
| CC | GO:0043227 | membrane-bounded organelle | None | Extended |
| CC | GO:0043229 | intracellular organelle | None | Extended |
| CC | GO:0043231 | intracellular membrane-bounded organelle | None | Extended |
| BP | GO:0043412 | macromolecule modification | None | Extended |
| BP | GO:0044237 | cellular metabolic process | None | Extended |
| BP | GO:0044238 | primary metabolic process | None | Extended |
| BP | GO:0046483 | heterocycle metabolic process | None | Extended |
| MF | GO:0046872 | metal ion binding | IEA | AHRD |
| BP | GO:0048856 | anatomical structure development | None | Extended |
| BP | GO:0071704 | organic substance metabolic process | None | Extended |
| BP | GO:0080156 | mitochondrial mRNA modification | IEA | AHRD |
| BP | GO:0090304 | nucleic acid metabolic process | None | Extended |
| MF | GO:0097159 | organic cyclic compound binding | None | Extended |
| CC | GO:0110165 | cellular anatomical entity | None | Extended |
| BP | GO:0140053 | mitochondrial gene expression | None | Extended |
| BP | GO:0140547 | acquisition of seed longevity | IEA | AHRD |
| BP | GO:1900864 | mitochondrial RNA modification | None | Extended |
| BP | GO:1900865 | chloroplast RNA modification | IEA | AHRD |
| BP | GO:1901360 | organic cyclic compound metabolic process | None | Extended |
| MF | GO:1901363 | heterocyclic compound binding | None | Extended |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003747 | translation release factor activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0003896 | DNA primase activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006269 | DNA replication, synthesis of RNA primer | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006390 | mitochondrial transcription | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006397 | mRNA processing | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006415 | translational termination | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0008079 | translation termination factor activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0008270 | zinc ion binding | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0008654 | phospholipid biosynthetic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009240 | isopentenyl diphosphate biosynthetic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009657 | plastid organization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009658 | chloroplast organization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009756 | carbohydrate mediated signaling | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010015 | root morphogenesis | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010101 | post-embryonic root morphogenesis | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010102 | lateral root morphogenesis | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010182 | sugar mediated signaling pathway | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010343 | singlet oxygen-mediated programmed cell death | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0016779 | nucleotidyltransferase activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0019287 | isopentenyl diphosphate biosynthetic process, mevalonate pathway | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0019288 | isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0019682 | glyceraldehyde-3-phosphate metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0022411 | cellular component disassembly | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0031426 | polycistronic mRNA processing | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0032774 | RNA biosynthetic process | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0034046 | poly(G) binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0034245 | mitochondrial DNA-directed RNA polymerase complex | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0036473 | cell death in response to oxidative stress | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0042645 | mitochondrial nucleoid | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0043139 | 5'-3' DNA helicase activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0046490 | isopentenyl diphosphate metabolic process | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0046914 | transition metal ion binding | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0048366 | leaf development | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0048827 | phyllome development | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0090407 | organophosphate biosynthetic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0090697 | post-embryonic plant organ morphogenesis | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0097468 | programmed cell death in response to reactive oxygen species | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0097747 | RNA polymerase activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1904821 | chloroplast disassembly | IEP | Predict GO terms from Neighborhoods |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR011990 | TPR-like_helical_dom_sf | 189 | 540 |
| IPR002885 | Pentatricopeptide_repeat | 278 | 327 |
| IPR002885 | Pentatricopeptide_repeat | 76 | 123 |
| IPR002885 | Pentatricopeptide_repeat | 177 | 225 |
| IPR002885 | Pentatricopeptide_repeat | 254 | 281 |
| IPR002885 | Pentatricopeptide_repeat | 180 | 214 |
| IPR002885 | Pentatricopeptide_repeat | 354 | 378 |
| IPR002885 | Pentatricopeptide_repeat | 281 | 315 |
| IPR002885 | Pentatricopeptide_repeat | 80 | 112 |
| IPR002885 | Pentatricopeptide_repeat | 382 | 412 |
| IPR002885 | Pentatricopeptide_repeat | 454 | 479 |
| IPR032867 | DYW_dom | 555 | 676 |
| No external refs found! |
Loading ... please wait ...