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  5. SOLTUB.AGRIA.G00000030027

SOLTUB.AGRIA.G00000030027


Description : Splicing factor 3A subunit 2


Gene families : OG_02_0010349 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000030027
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_134


Type GO Term Name Evidence Source
BP GO:0000389 mRNA 3'-splice site recognition IEA AHRD
MF GO:0003723 RNA binding IEA AHRD
MF GO:0005515 protein binding IEA AHRD
CC GO:0005686 U2 snRNP IEA AHRD
MF GO:0008270 zinc ion binding IEA AHRD
BP GO:0010976 positive regulation of neuron projection development IEA AHRD
CC GO:0016607 nuclear speck IEA AHRD
CC GO:0071004 U2-type prespliceosome IEA AHRD
CC GO:0071005 U2-type precatalytic spliceosome IEA AHRD
CC GO:0071013 catalytic step 2 spliceosome IEA AHRD
BP GO:1903241 U2-type prespliceosome assembly IEA AHRD
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Type GO Term Name Evidence Source
CC GO:0000109 nucleotide-excision repair complex IEP Predict GO terms from Neighborhoods
CC GO:0000159 protein phosphatase type 2A complex IEP Predict GO terms from Neighborhoods
BP GO:0000381 regulation of alternative mRNA splicing, via spliceosome IEP Predict GO terms from Neighborhoods
BP GO:0000715 nucleotide-excision repair, DNA damage recognition IEP Predict GO terms from Neighborhoods
CC GO:0000776 kinetochore IEP Predict GO terms from Neighborhoods
CC GO:0000785 chromatin IEP Predict GO terms from Neighborhoods
CC GO:0000791 euchromatin IEP Predict GO terms from Neighborhoods
BP GO:0000972 transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery IEP Predict GO terms from Neighborhoods
BP GO:0000973 post-transcriptional tethering of RNA polymerase II gene DNA at nuclear periphery IEP Predict GO terms from Neighborhoods
MF GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding IEP Predict GO terms from Neighborhoods
MF GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding IEP Predict GO terms from Neighborhoods
MF GO:0000987 cis-regulatory region sequence-specific DNA binding IEP Predict GO terms from Neighborhoods
BP GO:0002064 epithelial cell development IEP Predict GO terms from Neighborhoods
BP GO:0002066 columnar/cuboidal epithelial cell development IEP Predict GO terms from Neighborhoods
BP GO:0002230 positive regulation of defense response to virus by host IEP Predict GO terms from Neighborhoods
MF GO:0003684 damaged DNA binding IEP Predict GO terms from Neighborhoods
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Predict GO terms from Neighborhoods
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP Predict GO terms from Neighborhoods
CC GO:0005654 nucleoplasm IEP Predict GO terms from Neighborhoods
CC GO:0005703 polytene chromosome puff IEP Predict GO terms from Neighborhoods
CC GO:0005704 polytene chromosome band IEP Predict GO terms from Neighborhoods
CC GO:0005771 multivesicular body IEP Predict GO terms from Neighborhoods
CC GO:0005801 cis-Golgi network IEP Predict GO terms from Neighborhoods
BP GO:0006366 transcription by RNA polymerase II IEP Predict GO terms from Neighborhoods
BP GO:0006397 mRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0006405 RNA export from nucleus IEP Predict GO terms from Neighborhoods
BP GO:0006406 mRNA export from nucleus IEP Predict GO terms from Neighborhoods
BP GO:0006509 membrane protein ectodomain proteolysis IEP Predict GO terms from Neighborhoods
BP GO:0006606 protein import into nucleus IEP Predict GO terms from Neighborhoods
BP GO:0006810 transport IEP Predict GO terms from Neighborhoods
BP GO:0006996 organelle organization IEP Predict GO terms from Neighborhoods
BP GO:0006999 nuclear pore organization IEP Predict GO terms from Neighborhoods
BP GO:0007076 mitotic chromosome condensation IEP Predict GO terms from Neighborhoods
BP GO:0008064 regulation of actin polymerization or depolymerization IEP Predict GO terms from Neighborhoods
MF GO:0008160 protein tyrosine phosphatase activator activity IEP Predict GO terms from Neighborhoods
CC GO:0008287 protein serine/threonine phosphatase complex IEP Predict GO terms from Neighborhoods
BP GO:0010921 regulation of phosphatase activity IEP Predict GO terms from Neighborhoods
BP GO:0010922 positive regulation of phosphatase activity IEP Predict GO terms from Neighborhoods
BP GO:0010923 negative regulation of phosphatase activity IEP Predict GO terms from Neighborhoods
BP GO:0010942 positive regulation of cell death IEP Predict GO terms from Neighborhoods
CC GO:0012506 vesicle membrane IEP Predict GO terms from Neighborhoods
BP GO:0015774 polysaccharide transport IEP Predict GO terms from Neighborhoods
MF GO:0016859 cis-trans isomerase activity IEP Predict GO terms from Neighborhoods
MF GO:0016887 ATP hydrolysis activity IEP Predict GO terms from Neighborhoods
MF GO:0017056 structural constituent of nuclear pore IEP Predict GO terms from Neighborhoods
MF GO:0019104 DNA N-glycosylase activity IEP Predict GO terms from Neighborhoods
MF GO:0019208 phosphatase regulator activity IEP Predict GO terms from Neighborhoods
MF GO:0019211 phosphatase activator activity IEP Predict GO terms from Neighborhoods
MF GO:0019888 protein phosphatase regulator activity IEP Predict GO terms from Neighborhoods
BP GO:0030097 hemopoiesis IEP Predict GO terms from Neighborhoods
CC GO:0030134 COPII-coated ER to Golgi transport vesicle IEP Predict GO terms from Neighborhoods
BP GO:0030261 chromosome condensation IEP Predict GO terms from Neighborhoods
CC GO:0030659 cytoplasmic vesicle membrane IEP Predict GO terms from Neighborhoods
BP GO:0030718 germ-line stem cell population maintenance IEP Predict GO terms from Neighborhoods
BP GO:0030719 P granule organization IEP Predict GO terms from Neighborhoods
BP GO:0030832 regulation of actin filament length IEP Predict GO terms from Neighborhoods
BP GO:0030833 regulation of actin filament polymerization IEP Predict GO terms from Neighborhoods
BP GO:0030838 positive regulation of actin filament polymerization IEP Predict GO terms from Neighborhoods
CC GO:0031090 organelle membrane IEP Predict GO terms from Neighborhoods
BP GO:0031334 positive regulation of protein-containing complex assembly IEP Predict GO terms from Neighborhoods
MF GO:0031593 polyubiquitin modification-dependent protein binding IEP Predict GO terms from Neighborhoods
CC GO:0031982 vesicle IEP Predict GO terms from Neighborhoods
CC GO:0031985 Golgi cisterna IEP Predict GO terms from Neighborhoods
BP GO:0032271 regulation of protein polymerization IEP Predict GO terms from Neighborhoods
BP GO:0032273 positive regulation of protein polymerization IEP Predict GO terms from Neighborhoods
BP GO:0032386 regulation of intracellular transport IEP Predict GO terms from Neighborhoods
BP GO:0032509 endosome transport via multivesicular body sorting pathway IEP Predict GO terms from Neighborhoods
BP GO:0032511 late endosome to vacuole transport via multivesicular body sorting pathway IEP Predict GO terms from Neighborhoods
BP GO:0032515 negative regulation of phosphoprotein phosphatase activity IEP Predict GO terms from Neighborhoods
BP GO:0032516 positive regulation of phosphoprotein phosphatase activity IEP Predict GO terms from Neighborhoods
CC GO:0032586 protein storage vacuole membrane IEP Predict GO terms from Neighborhoods
CC GO:0032588 trans-Golgi network membrane IEP Predict GO terms from Neighborhoods
BP GO:0032879 regulation of localization IEP Predict GO terms from Neighborhoods
CC GO:0033017 sarcoplasmic reticulum membrane IEP Predict GO terms from Neighborhoods
BP GO:0033119 negative regulation of RNA splicing IEP Predict GO terms from Neighborhoods
BP GO:0033619 membrane protein proteolysis IEP Predict GO terms from Neighborhoods
BP GO:0034097 response to cytokine IEP Predict GO terms from Neighborhoods
BP GO:0034406 cell wall beta-glucan metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0034410 cell wall beta-glucan biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0034501 protein localization to kinetochore IEP Predict GO terms from Neighborhoods
BP GO:0034502 protein localization to chromosome IEP Predict GO terms from Neighborhoods
CC GO:0034702 ion channel complex IEP Predict GO terms from Neighborhoods
CC GO:0034703 cation channel complex IEP Predict GO terms from Neighborhoods
CC GO:0034704 calcium channel complex IEP Predict GO terms from Neighborhoods
BP GO:0035075 response to ecdysone IEP Predict GO terms from Neighborhoods
BP GO:0035079 polytene chromosome puffing IEP Predict GO terms from Neighborhoods
BP GO:0035080 heat shock-mediated polytene chromosome puffing IEP Predict GO terms from Neighborhoods
BP GO:0035166 post-embryonic hemopoiesis IEP Predict GO terms from Neighborhoods
BP GO:0035167 larval lymph gland hemopoiesis IEP Predict GO terms from Neighborhoods
BP GO:0035304 regulation of protein dephosphorylation IEP Predict GO terms from Neighborhoods
BP GO:0035305 negative regulation of dephosphorylation IEP Predict GO terms from Neighborhoods
BP GO:0035306 positive regulation of dephosphorylation IEP Predict GO terms from Neighborhoods
BP GO:0035307 positive regulation of protein dephosphorylation IEP Predict GO terms from Neighborhoods
BP GO:0035308 negative regulation of protein dephosphorylation IEP Predict GO terms from Neighborhoods
BP GO:0036098 male germ-line stem cell population maintenance IEP Predict GO terms from Neighborhoods
BP GO:0036314 response to sterol IEP Predict GO terms from Neighborhoods
BP GO:0036315 cellular response to sterol IEP Predict GO terms from Neighborhoods
MF GO:0042802 identical protein binding IEP Predict GO terms from Neighborhoods
MF GO:0042803 protein homodimerization activity IEP Predict GO terms from Neighborhoods
BP GO:0042981 regulation of apoptotic process IEP Predict GO terms from Neighborhoods
BP GO:0043065 positive regulation of apoptotic process IEP Predict GO terms from Neighborhoods
BP GO:0043068 positive regulation of programmed cell death IEP Predict GO terms from Neighborhoods
CC GO:0043186 P granule IEP Predict GO terms from Neighborhoods
CC GO:0043230 extracellular organelle IEP Predict GO terms from Neighborhoods
BP GO:0043666 regulation of phosphoprotein phosphatase activity IEP Predict GO terms from Neighborhoods
BP GO:0043922 negative regulation by host of viral transcription IEP Predict GO terms from Neighborhoods
MF GO:0044325 transmembrane transporter binding IEP Predict GO terms from Neighborhoods
CC GO:0044530 supraspliceosomal complex IEP Predict GO terms from Neighborhoods
CC GO:0044614 nuclear pore cytoplasmic filaments IEP Predict GO terms from Neighborhoods
BP GO:0045292 mRNA cis splicing, via spliceosome IEP Predict GO terms from Neighborhoods
BP GO:0045324 late endosome to vacuole transport IEP Predict GO terms from Neighborhoods
BP GO:0046755 viral budding IEP Predict GO terms from Neighborhoods
MF GO:0046983 protein dimerization activity IEP Predict GO terms from Neighborhoods
BP GO:0048025 negative regulation of mRNA splicing, via spliceosome IEP Predict GO terms from Neighborhoods
BP GO:0048568 embryonic organ development IEP Predict GO terms from Neighborhoods
BP GO:0048569 post-embryonic animal organ development IEP Predict GO terms from Neighborhoods
BP GO:0048571 long-day photoperiodism IEP Predict GO terms from Neighborhoods
BP GO:0048574 long-day photoperiodism, flowering IEP Predict GO terms from Neighborhoods
BP GO:0048766 root hair initiation IEP Predict GO terms from Neighborhoods
BP GO:0050686 negative regulation of mRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0050688 regulation of defense response to virus IEP Predict GO terms from Neighborhoods
BP GO:0050691 regulation of defense response to virus by host IEP Predict GO terms from Neighborhoods
BP GO:0050848 regulation of calcium-mediated signaling IEP Predict GO terms from Neighborhoods
BP GO:0050850 positive regulation of calcium-mediated signaling IEP Predict GO terms from Neighborhoods
MF GO:0050897 cobalt ion binding IEP Predict GO terms from Neighborhoods
BP GO:0051049 regulation of transport IEP Predict GO terms from Neighborhoods
BP GO:0051170 import into nucleus IEP Predict GO terms from Neighborhoods
BP GO:0051209 release of sequestered calcium ion into cytosol IEP Predict GO terms from Neighborhoods
BP GO:0051234 establishment of localization IEP Predict GO terms from Neighborhoods
BP GO:0051276 chromosome organization IEP Predict GO terms from Neighborhoods
BP GO:0051282 regulation of sequestering of calcium ion IEP Predict GO terms from Neighborhoods
BP GO:0051283 negative regulation of sequestering of calcium ion IEP Predict GO terms from Neighborhoods
BP GO:0051495 positive regulation of cytoskeleton organization IEP Predict GO terms from Neighborhoods
BP GO:0051664 nuclear pore localization IEP Predict GO terms from Neighborhoods
MF GO:0051721 protein phosphatase 2A binding IEP Predict GO terms from Neighborhoods
BP GO:0051851 modulation by host of symbiont process IEP Predict GO terms from Neighborhoods
BP GO:0052324 plant-type cell wall cellulose biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0052541 plant-type cell wall cellulose metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0060260 regulation of transcription initiation by RNA polymerase II IEP Predict GO terms from Neighborhoods
BP GO:0060261 positive regulation of transcription initiation by RNA polymerase II IEP Predict GO terms from Neighborhoods
BP GO:0060341 regulation of cellular localization IEP Predict GO terms from Neighborhoods
BP GO:0060576 intestinal epithelial cell development IEP Predict GO terms from Neighborhoods
CC GO:0061574 ASAP complex IEP Predict GO terms from Neighborhoods
CC GO:0065010 extracellular membrane-bounded organelle IEP Predict GO terms from Neighborhoods
CC GO:0070062 extracellular exosome IEP Predict GO terms from Neighborhoods
BP GO:0070555 response to interleukin-1 IEP Predict GO terms from Neighborhoods
BP GO:0070588 calcium ion transmembrane transport IEP Predict GO terms from Neighborhoods
MF GO:0070628 proteasome binding IEP Predict GO terms from Neighborhoods
BP GO:0070884 regulation of calcineurin-NFAT signaling cascade IEP Predict GO terms from Neighborhoods
BP GO:0070886 positive regulation of calcineurin-NFAT signaling cascade IEP Predict GO terms from Neighborhoods
BP GO:0071310 cellular response to organic substance IEP Predict GO terms from Neighborhoods
BP GO:0071345 cellular response to cytokine stimulus IEP Predict GO terms from Neighborhoods
BP GO:0071347 cellular response to interleukin-1 IEP Predict GO terms from Neighborhoods
BP GO:0071390 cellular response to ecdysone IEP Predict GO terms from Neighborhoods
BP GO:0071459 protein localization to chromosome, centromeric region IEP Predict GO terms from Neighborhoods
CC GO:0071942 XPC complex IEP Predict GO terms from Neighborhoods
BP GO:0071985 multivesicular body sorting pathway IEP Predict GO terms from Neighborhoods
MF GO:0072542 protein phosphatase activator activity IEP Predict GO terms from Neighborhoods
BP GO:0090304 nucleic acid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0090435 protein localization to nuclear envelope IEP Predict GO terms from Neighborhoods
BP GO:0097553 calcium ion transmembrane import into cytosol IEP Predict GO terms from Neighborhoods
CC GO:0098588 bounding membrane of organelle IEP Predict GO terms from Neighborhoods
BP GO:0098760 response to interleukin-7 IEP Predict GO terms from Neighborhoods
BP GO:0098761 cellular response to interleukin-7 IEP Predict GO terms from Neighborhoods
BP GO:0106056 regulation of calcineurin-mediated signaling IEP Predict GO terms from Neighborhoods
BP GO:0106058 positive regulation of calcineurin-mediated signaling IEP Predict GO terms from Neighborhoods
MF GO:0106260 DNA-DNA tethering activity IEP Predict GO terms from Neighborhoods
MF GO:0140585 promoter-enhancer loop anchoring activity IEP Predict GO terms from Neighborhoods
MF GO:0140587 chromatin loop anchoring activity IEP Predict GO terms from Neighborhoods
BP GO:1900871 chloroplast mRNA modification IEP Predict GO terms from Neighborhoods
BP GO:1901655 cellular response to ketone IEP Predict GO terms from Neighborhoods
BP GO:1902446 regulation of shade avoidance IEP Predict GO terms from Neighborhoods
CC GO:1902495 transmembrane transporter complex IEP Predict GO terms from Neighborhoods
BP GO:1902905 positive regulation of supramolecular fiber organization IEP Predict GO terms from Neighborhoods
BP GO:1903047 mitotic cell cycle process IEP Predict GO terms from Neighborhoods
BP GO:1903083 protein localization to condensed chromosome IEP Predict GO terms from Neighborhoods
CC GO:1903293 phosphatase complex IEP Predict GO terms from Neighborhoods
BP GO:1903312 negative regulation of mRNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1903335 regulation of vacuolar transport IEP Predict GO terms from Neighborhoods
CC GO:1903561 extracellular vesicle IEP Predict GO terms from Neighborhoods
BP GO:1990893 mitotic chromosome centromere condensation IEP Predict GO terms from Neighborhoods
BP GO:2000142 regulation of DNA-templated transcription initiation IEP Predict GO terms from Neighborhoods
BP GO:2000144 positive regulation of DNA-templated transcription initiation IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR031781 SF3A2_dom 110 204
IPR036236 Znf_C2H2_sf 48 82
No external refs found!