SOLTUB.AGRIA.G00000030254

Description : Pentatricopeptide repeat-containing protein, putative

Gene families : OG_02_0016453 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000030254
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_118

Type	GO Term	Name	Evidence	Source
BP	GO:0000959	mitochondrial RNA metabolic process	None	Extended
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003729	mRNA binding	IEA	AHRD
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005739	mitochondrion	IEA	AHRD
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	None	Extended
CC	GO:0009507	chloroplast	IEA	AHRD
CC	GO:0009536	plastid	None	Extended
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009756	carbohydrate mediated signaling	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010015	root morphogenesis	None	Extended
BP	GO:0010101	post-embryonic root morphogenesis	None	Extended
BP	GO:0010102	lateral root morphogenesis	IEA	AHRD
BP	GO:0010182	sugar mediated signaling pathway	IEA	AHRD
BP	GO:0010214	seed coat development	IEA	AHRD
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0016553	base conversion or substitution editing	None	Extended
BP	GO:0016554	cytidine to uridine editing	IEA	AHRD
BP	GO:0016556	mRNA modification	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0031425	chloroplast RNA processing	IEA	AHRD
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080156	mitochondrial mRNA modification	IEA	AHRD
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0090697	post-embryonic plant organ morphogenesis	None	Extended
BP	GO:0090698	post-embryonic plant morphogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:0140547	acquisition of seed longevity	IEA	AHRD
BP	GO:1900864	mitochondrial RNA modification	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1905392	plant organ morphogenesis	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000963	mitochondrial RNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0000966	RNA 5'-end processing	IEP	Predict GO terms from Neighborhoods
MF	GO:0004016	adenylate cyclase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009644	response to high light intensity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009668	plastid membrane organization	IEP	Predict GO terms from Neighborhoods
MF	GO:0009975	cyclase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0010027	thylakoid membrane organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0010109	regulation of photosynthesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0010205	photoinhibition	IEP	Predict GO terms from Neighborhoods
BP	GO:0010206	photosystem II repair	IEP	Predict GO terms from Neighborhoods
BP	GO:0010467	gene expression	IEP	Predict GO terms from Neighborhoods
MF	GO:0016849	phosphorus-oxygen lyase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0030091	protein repair	IEP	Predict GO terms from Neighborhoods
CC	GO:0031977	thylakoid lumen	IEP	Predict GO terms from Neighborhoods
BP	GO:0042548	regulation of photosynthesis, light reaction	IEP	Predict GO terms from Neighborhoods
BP	GO:0043155	negative regulation of photosynthesis, light reaction	IEP	Predict GO terms from Neighborhoods
BP	GO:0043467	regulation of generation of precursor metabolites and energy	IEP	Predict GO terms from Neighborhoods
BP	GO:0048564	photosystem I assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0072593	reactive oxygen species metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0090615	mitochondrial mRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0090617	mitochondrial mRNA 5'-end processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0140053	mitochondrial gene expression	IEP	Predict GO terms from Neighborhoods
BP	GO:1905156	negative regulation of photosynthesis	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	85	113
IPR002885	Pentatricopeptide_repeat	118	165
IPR002885	Pentatricopeptide_repeat	219	265
IPR011990	TPR-like_helical_dom_sf	85	302
IPR002885	Pentatricopeptide_repeat	90	119
IPR002885	Pentatricopeptide_repeat	194	221
IPR002885	Pentatricopeptide_repeat	121	154
IPR002885	Pentatricopeptide_repeat	222	255
IPR002885	Pentatricopeptide_repeat	360	389

External Links

No external refs found!

SOLTUB.AGRIA.G00000030254

Expression Profile

Co-expression Networks

Functional Annotation