SOLTUB.AGRIA.G00000003161

Description : RING-H2 finger protein ATL3C

Gene families : OG_02_0018246 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000003161
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_215

Type	GO Term	Name	Evidence	Source
BP	GO:0000209	protein polyubiquitination	None	Extended
BP	GO:0001101	response to acid chemical	None	Extended
BP	GO:0001558	regulation of cell growth	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	AHRD
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	IEA	AHRD
BP	GO:0006355	regulation of DNA-templated transcription	None	Extended
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEA	AHRD
BP	GO:0006513	protein monoubiquitination	IEA	AHRD
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0007154	cell communication	None	Extended
BP	GO:0007275	multicellular organism development	None	Extended
MF	GO:0008134	transcription factor binding	IEA	AHRD
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009414	response to water deprivation	None	Extended
BP	GO:0009415	response to water	None	Extended
BP	GO:0009555	pollen development	IEA	AHRD
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009891	positive regulation of biosynthetic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0009900	dehiscence	None	Extended
BP	GO:0009901	anther dehiscence	IEA	AHRD
BP	GO:0009987	cellular process	None	Extended
BP	GO:0009991	response to extracellular stimulus	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010035	response to inorganic substance	None	Extended
BP	GO:0010200	response to chitin	IEA	AHRD
BP	GO:0010243	response to organonitrogen compound	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010565	regulation of cellular ketone metabolic process	None	Extended
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
BP	GO:0010721	negative regulation of cell development	None	Extended
BP	GO:0010975	regulation of neuron projection development	None	Extended
BP	GO:0010977	negative regulation of neuron projection development	None	Extended
CC	GO:0016020	membrane	IEA	AHRD
BP	GO:0016567	protein ubiquitination	None	Extended
CC	GO:0016604	nuclear body	None	Extended
CC	GO:0016605	PML body	IEA	AHRD
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019216	regulation of lipid metabolic process	None	Extended
BP	GO:0019217	regulation of fatty acid metabolic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
MF	GO:0019899	enzyme binding	None	Extended
BP	GO:0019941	modification-dependent protein catabolic process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0022603	regulation of anatomical structure morphogenesis	None	Extended
BP	GO:0030308	negative regulation of cell growth	None	Extended
CC	GO:0030424	axon	IEA	AHRD
BP	GO:0030516	regulation of axon extension	None	Extended
BP	GO:0030517	negative regulation of axon extension	IEA	AHRD
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031325	positive regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031328	positive regulation of cellular biosynthetic process	None	Extended
BP	GO:0031344	regulation of cell projection organization	None	Extended
BP	GO:0031345	negative regulation of cell projection organization	None	Extended
MF	GO:0031625	ubiquitin protein ligase binding	IEA	AHRD
BP	GO:0031668	cellular response to extracellular stimulus	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0040008	regulation of growth	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0042304	regulation of fatty acid biosynthetic process	None	Extended
BP	GO:0042631	cellular response to water deprivation	IEA	AHRD
CC	GO:0042995	cell projection	None	Extended
CC	GO:0043005	neuron projection	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
MF	GO:0044389	ubiquitin-like protein ligase binding	None	Extended
BP	GO:0045595	regulation of cell differentiation	None	Extended
BP	GO:0045596	negative regulation of cell differentiation	None	Extended
BP	GO:0045893	positive regulation of DNA-templated transcription	IEA	AHRD
BP	GO:0045926	negative regulation of growth	None	Extended
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0046890	regulation of lipid biosynthetic process	None	Extended
BP	GO:0048229	gametophyte development	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0048609	multicellular organismal reproductive process	None	Extended
BP	GO:0048638	regulation of developmental growth	None	Extended
BP	GO:0048640	negative regulation of developmental growth	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050767	regulation of neurogenesis	None	Extended
BP	GO:0050768	negative regulation of neurogenesis	None	Extended
BP	GO:0050770	regulation of axonogenesis	None	Extended
BP	GO:0050771	negative regulation of axonogenesis	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051093	negative regulation of developmental process	None	Extended
BP	GO:0051128	regulation of cellular component organization	None	Extended
BP	GO:0051129	negative regulation of cellular component organization	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051239	regulation of multicellular organismal process	None	Extended
BP	GO:0051241	negative regulation of multicellular organismal process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051254	positive regulation of RNA metabolic process	None	Extended
BP	GO:0051603	proteolysis involved in protein catabolic process	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0051865	protein autoubiquitination	IEA	AHRD
BP	GO:0051960	regulation of nervous system development	None	Extended
BP	GO:0051961	negative regulation of nervous system development	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0060284	regulation of cell development	None	Extended
BP	GO:0061387	regulation of extent of cell growth	None	Extended
MF	GO:0061630	ubiquitin protein ligase activity	IEA	AHRD
MF	GO:0061659	ubiquitin-like protein ligase activity	None	Extended
BP	GO:0062012	regulation of small molecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0070887	cellular response to chemical stimulus	None	Extended
BP	GO:0070936	protein K48-linked ubiquitination	IEA	AHRD
BP	GO:0071214	cellular response to abiotic stimulus	None	Extended
BP	GO:0071229	cellular response to acid chemical	None	Extended
BP	GO:0071462	cellular response to water stimulus	None	Extended
BP	GO:0071496	cellular response to external stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0080140	regulation of jasmonic acid metabolic process	None	Extended
BP	GO:0080141	regulation of jasmonic acid biosynthetic process	IEA	AHRD
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0104004	cellular response to environmental stimulus	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
CC	GO:0120025	plasma membrane bounded cell projection	None	Extended
BP	GO:0120035	regulation of plasma membrane bounded cell projection organization	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
BP	GO:1901698	response to nitrogen compound	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended
BP	GO:1901701	cellular response to oxygen-containing compound	None	Extended
BP	GO:1902680	positive regulation of RNA biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000026	regulation of multicellular organismal development	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000329	fungal-type vacuole membrane	IEP	Predict GO terms from Neighborhoods
MF	GO:0005385	zinc ion transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005784	Sec61 translocon complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0006616	SRP-dependent cotranslational protein targeting to membrane, translocation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006766	vitamin metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006775	fat-soluble vitamin metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006824	cobalt ion transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0006828	manganese ion transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0006829	zinc ion transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0006877	cellular cobalt ion homeostasis	IEP	Predict GO terms from Neighborhoods
MF	GO:0008320	protein transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0008614	pyridoxine metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0008615	pyridoxine biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009110	vitamin biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010155	regulation of proton transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0010966	regulation of phosphate transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0015450	protein-transporting ATPase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016151	nickel cation binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0016226	iron-sulfur cluster assembly	IEP	Predict GO terms from Neighborhoods
MF	GO:0016289	CoA hydrolase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016790	thiolester hydrolase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016832	aldehyde-lyase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016840	carbon-nitrogen lyase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016843	amine-lyase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0017038	protein import	IEP	Predict GO terms from Neighborhoods
MF	GO:0019838	growth factor binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0022884	macromolecule transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0030970	retrograde protein transport, ER to cytosol	IEP	Predict GO terms from Neighborhoods
BP	GO:0031100	animal organ regeneration	IEP	Predict GO terms from Neighborhoods
BP	GO:0031163	metallo-sulfur cluster assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0031204	post-translational protein targeting to membrane, translocation	IEP	Predict GO terms from Neighborhoods
CC	GO:0031205	endoplasmic reticulum Sec complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0032119	sequestering of zinc ion	IEP	Predict GO terms from Neighborhoods
BP	GO:0032527	protein exit from endoplasmic reticulum	IEP	Predict GO terms from Neighborhoods
BP	GO:0034214	protein hexamerization	IEP	Predict GO terms from Neighborhoods
MF	GO:0036381	pyridoxal 5'-phosphate synthase (glutamine hydrolysing) activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0042362	fat-soluble vitamin biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042371	vitamin K biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042372	phylloquinone biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042373	vitamin K metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042374	phylloquinone metabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0042597	periplasmic space	IEP	Predict GO terms from Neighborhoods
BP	GO:0042816	vitamin B6 metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042819	vitamin B6 biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042822	pyridoxal phosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042823	pyridoxal phosphate biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0043269	regulation of ion transport	IEP	Predict GO terms from Neighborhoods
CC	GO:0044322	endoplasmic reticulum quality control compartment	IEP	Predict GO terms from Neighborhoods
BP	GO:0044572	[4Fe-4S] cluster assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0045048	protein insertion into ER membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0046184	aldehyde biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046967	cytosol to endoplasmic reticulum transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0048408	epidermal growth factor binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0051176	positive regulation of sulfur metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051205	protein insertion into membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0051238	sequestering of metal ion	IEP	Predict GO terms from Neighborhoods
BP	GO:0051259	protein complex oligomerization	IEP	Predict GO terms from Neighborhoods
MF	GO:0051537	2 iron, 2 sulfur cluster binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0055068	cobalt ion homeostasis	IEP	Predict GO terms from Neighborhoods
MF	GO:0061522	1,4-dihydroxy-2-naphthoyl-CoA thioesterase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0061687	detoxification of inorganic compound	IEP	Predict GO terms from Neighborhoods
BP	GO:0062111	zinc ion import into organelle	IEP	Predict GO terms from Neighborhoods
CC	GO:0071256	translocon complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0071577	zinc ion transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0071585	detoxification of cadmium ion	IEP	Predict GO terms from Neighborhoods
BP	GO:0071816	tail-anchored membrane protein insertion into ER membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0072525	pyridine-containing compound biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0090421	embryonic meristem initiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0097421	liver regeneration	IEP	Predict GO terms from Neighborhoods
BP	GO:0097428	protein maturation by iron-sulfur cluster transfer	IEP	Predict GO terms from Neighborhoods
CC	GO:0098556	cytoplasmic side of rough endoplasmic reticulum membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0098849	cellular detoxification of cadmium ion	IEP	Predict GO terms from Neighborhoods
BP	GO:0106035	protein maturation by [4Fe-4S] cluster transfer	IEP	Predict GO terms from Neighborhoods
MF	GO:0106099	2-keto-3-deoxy-L-rhamnonate aldolase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0140209	zinc ion import into endoplasmic reticulum	IEP	Predict GO terms from Neighborhoods
MF	GO:0140318	protein transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0140820	cytosol to Golgi apparatus transport	IEP	Predict GO terms from Neighborhoods
BP	GO:1901661	quinone metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901663	quinone biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1903513	endoplasmic reticulum to cytosol transport	IEP	Predict GO terms from Neighborhoods
BP	GO:1904257	zinc ion import into Golgi lumen	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR001841	Znf_RING	52	95

External Links

No external refs found!

SOLTUB.AGRIA.G00000003161

Expression Profile

Co-expression Networks

Functional Annotation