SOLTUB.AGRIA.G00000031012

Description : Transposase tnp2

Gene families : OG_02_0000246 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000031012
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_101

Target	Alias	Description	ECC score	Gene Family Method
SOLTUB.AGRIA.G00000014498	No alias	PttA2 protein, putative	0.06	Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000014498	No alias	PttA2 protein, putative	0.06	Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000014498	No alias	PttA2 protein, putative	0.06	Orthogroups with 8 Potato genotypes

Type	GO Term	Name	Evidence	Source
No GO annotation available for this sequence

Type	GO Term	Name	Evidence	Source
BP	GO:0000028	ribosomal small subunit assembly	IEP	Predict GO terms from Neighborhoods
CC	GO:0000427	plastid-encoded plastid RNA polymerase complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0000428	DNA-directed RNA polymerase complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific	IEP	Predict GO terms from Neighborhoods
CC	GO:0009295	nucleoid	IEP	Predict GO terms from Neighborhoods
CC	GO:0009842	cyanelle	IEP	Predict GO terms from Neighborhoods
CC	GO:0030880	RNA polymerase complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0042644	chloroplast nucleoid	IEP	Predict GO terms from Neighborhoods
CC	GO:0042646	plastid nucleoid	IEP	Predict GO terms from Neighborhoods
CC	GO:0101031	chaperone complex	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR025452	DUF4218	96	145

External Links

No external refs found!