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  5. SOLTUB.AGRIA.G00000031308

SOLTUB.AGRIA.G00000031308


Description : Protein Ycf2


Gene families : OG_02_0000330 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000031308
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_109

Target Alias Description ECC score Gene Family Method Actions
SOLTUB.AGRIA.G00000021731 No alias Photosystem I P700 chlorophyll a apoprotein A1 0.06 Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000024545 No alias Photosystem I P700 chlorophyll a apoprotein A1 0.06 Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000021731 No alias Photosystem I P700 chlorophyll a apoprotein A1 0.06 Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000024545 No alias Photosystem I P700 chlorophyll a apoprotein A1 0.06 Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000021731 No alias Photosystem I P700 chlorophyll a apoprotein A1 0.06 Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000024545 No alias Photosystem I P700 chlorophyll a apoprotein A1 0.06 Orthogroups with 8 Potato genotypes

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA AHRD
CC GO:0009570 chloroplast stroma IEA AHRD
CC GO:0009575 chromoplast stroma IEA AHRD
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP Predict GO terms from Neighborhoods
MF GO:0001882 nucleoside binding IEP Predict GO terms from Neighborhoods
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predict GO terms from Neighborhoods
MF GO:0003954 NADH dehydrogenase activity IEP Predict GO terms from Neighborhoods
MF GO:0003955 NAD(P)H dehydrogenase (quinone) activity IEP Predict GO terms from Neighborhoods
MF GO:0005215 transporter activity IEP Predict GO terms from Neighborhoods
MF GO:0005216 ion channel activity IEP Predict GO terms from Neighborhoods
MF GO:0005261 cation channel activity IEP Predict GO terms from Neighborhoods
MF GO:0005506 iron ion binding IEP Predict GO terms from Neighborhoods
CC GO:0005753 mitochondrial proton-transporting ATP synthase complex IEP Predict GO terms from Neighborhoods
BP GO:0006091 generation of precursor metabolites and energy IEP Predict GO terms from Neighborhoods
BP GO:0006164 purine nucleotide biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0006754 ATP biosynthetic process IEP Predict GO terms from Neighborhoods
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP Predict GO terms from Neighborhoods
MF GO:0009055 electron transfer activity IEP Predict GO terms from Neighborhoods
BP GO:0009141 nucleoside triphosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009142 nucleoside triphosphate biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009145 purine nucleoside triphosphate biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009152 purine ribonucleotide biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009201 ribonucleoside triphosphate biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009206 purine ribonucleoside triphosphate biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009260 ribonucleotide biosynthetic process IEP Predict GO terms from Neighborhoods
CC GO:0009521 photosystem IEP Predict GO terms from Neighborhoods
CC GO:0009522 photosystem I IEP Predict GO terms from Neighborhoods
CC GO:0009523 photosystem II IEP Predict GO terms from Neighborhoods
CC GO:0009535 chloroplast thylakoid membrane IEP Predict GO terms from Neighborhoods
MF GO:0009678 pyrophosphate hydrolysis-driven proton transmembrane transporter activity IEP Predict GO terms from Neighborhoods
BP GO:0009767 photosynthetic electron transport chain IEP Predict GO terms from Neighborhoods
BP GO:0009772 photosynthetic electron transport in photosystem II IEP Predict GO terms from Neighborhoods
BP GO:0010207 photosystem II assembly IEP Predict GO terms from Neighborhoods
MF GO:0010242 oxygen evolving activity IEP Predict GO terms from Neighborhoods
MF GO:0015252 proton channel activity IEP Predict GO terms from Neighborhoods
MF GO:0015399 primary active transmembrane transporter activity IEP Predict GO terms from Neighborhoods
MF GO:0015453 oxidoreduction-driven active transmembrane transporter activity IEP Predict GO terms from Neighborhoods
BP GO:0015979 photosynthesis IEP Predict GO terms from Neighborhoods
BP GO:0015986 proton motive force-driven ATP synthesis IEP Predict GO terms from Neighborhoods
CC GO:0016021 integral component of membrane IEP Predict GO terms from Neighborhoods
MF GO:0016168 chlorophyll binding IEP Predict GO terms from Neighborhoods
CC GO:0016469 proton-transporting two-sector ATPase complex IEP Predict GO terms from Neighborhoods
MF GO:0016491 oxidoreductase activity IEP Predict GO terms from Neighborhoods
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Predict GO terms from Neighborhoods
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Predict GO terms from Neighborhoods
MF GO:0016779 nucleotidyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0016984 ribulose-bisphosphate carboxylase activity IEP Predict GO terms from Neighborhoods
BP GO:0018298 obsolete protein-chromophore linkage IEP Predict GO terms from Neighborhoods
BP GO:0019253 reductive pentose-phosphate cycle IEP Predict GO terms from Neighborhoods
BP GO:0019684 photosynthesis, light reaction IEP Predict GO terms from Neighborhoods
BP GO:0019685 photosynthesis, dark reaction IEP Predict GO terms from Neighborhoods
MF GO:0019829 ATPase-coupled cation transmembrane transporter activity IEP Predict GO terms from Neighborhoods
MF GO:0022804 active transmembrane transporter activity IEP Predict GO terms from Neighborhoods
MF GO:0022857 transmembrane transporter activity IEP Predict GO terms from Neighborhoods
BP GO:0022900 electron transport chain IEP Predict GO terms from Neighborhoods
BP GO:0022904 respiratory electron transport chain IEP Predict GO terms from Neighborhoods
CC GO:0031090 organelle membrane IEP Predict GO terms from Neighborhoods
CC GO:0031224 intrinsic component of membrane IEP Predict GO terms from Neighborhoods
CC GO:0031360 intrinsic component of thylakoid membrane IEP Predict GO terms from Neighborhoods
CC GO:0031361 integral component of thylakoid membrane IEP Predict GO terms from Neighborhoods
MF GO:0032549 ribonucleoside binding IEP Predict GO terms from Neighborhoods
CC GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain IEP Predict GO terms from Neighborhoods
MF GO:0034062 5'-3' RNA polymerase activity IEP Predict GO terms from Neighborhoods
CC GO:0034357 photosynthetic membrane IEP Predict GO terms from Neighborhoods
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Predict GO terms from Neighborhoods
CC GO:0042170 plastid membrane IEP Predict GO terms from Neighborhoods
MF GO:0042625 ATPase-coupled ion transmembrane transporter activity IEP Predict GO terms from Neighborhoods
CC GO:0042651 thylakoid membrane IEP Predict GO terms from Neighborhoods
BP GO:0042773 ATP synthesis coupled electron transport IEP Predict GO terms from Neighborhoods
BP GO:0042776 proton motive force-driven mitochondrial ATP synthesis IEP Predict GO terms from Neighborhoods
MF GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism IEP Predict GO terms from Neighborhoods
MF GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity IEP Predict GO terms from Neighborhoods
CC GO:0045259 proton-transporting ATP synthase complex IEP Predict GO terms from Neighborhoods
CC GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) IEP Predict GO terms from Neighborhoods
BP GO:0046034 ATP metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046390 ribose phosphate biosynthetic process IEP Predict GO terms from Neighborhoods
MF GO:0046906 tetrapyrrole binding IEP Predict GO terms from Neighborhoods
MF GO:0046933 proton-transporting ATP synthase activity, rotational mechanism IEP Predict GO terms from Neighborhoods
MF GO:0046961 proton-transporting ATPase activity, rotational mechanism IEP Predict GO terms from Neighborhoods
MF GO:0048038 quinone binding IEP Predict GO terms from Neighborhoods
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP Predict GO terms from Neighborhoods
MF GO:0051287 NAD binding IEP Predict GO terms from Neighborhoods
MF GO:0051536 iron-sulfur cluster binding IEP Predict GO terms from Neighborhoods
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Predict GO terms from Neighborhoods
MF GO:0051540 metal cluster binding IEP Predict GO terms from Neighborhoods
CC GO:0055035 plastid thylakoid membrane IEP Predict GO terms from Neighborhoods
MF GO:0097747 RNA polymerase activity IEP Predict GO terms from Neighborhoods
CC GO:0098796 membrane protein complex IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR001750 ND/Mrp_mem 490 602
IPR008543 Uncharacterised_Ycf2 853 1455
IPR002128 NADH_UbQ_OxRdtase_chlpt_su5_C 608 836
IPR006243 PSI_PsaA 1 540
IPR001280 PSI_PsaA/B 1 533
IPR036408 PSI_PsaA/B_sf 1 520
No external refs found!