Coexpression cluster: Cluster_109 (HCCA Clusters (HRR 50 & PCC 0.5))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0009055 electron transfer activity 25.58% (11/43) 5.9 0.0 0.0
GO:0022900 electron transport chain 25.58% (11/43) 5.37 0.0 0.0
GO:0055035 plastid thylakoid membrane 27.91% (12/43) 4.44 0.0 0.0
GO:0009535 chloroplast thylakoid membrane 27.91% (12/43) 4.46 0.0 0.0
GO:0034357 photosynthetic membrane 27.91% (12/43) 4.36 0.0 0.0
GO:0042651 thylakoid membrane 27.91% (12/43) 4.38 0.0 0.0
GO:0006091 generation of precursor metabolites and energy 25.58% (11/43) 4.16 0.0 0.0
GO:0042170 plastid membrane 27.91% (12/43) 3.7 0.0 0.0
GO:0016168 chlorophyll binding 13.95% (6/43) 6.26 0.0 0.0
GO:0018298 obsolete protein-chromophore linkage 13.95% (6/43) 5.94 0.0 0.0
GO:0009521 photosystem 13.95% (6/43) 5.63 0.0 0.0
GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity 9.3% (4/43) 7.74 0.0 0.0
GO:0009772 photosynthetic electron transport in photosystem II 9.3% (4/43) 7.58 0.0 0.0
GO:0019684 photosynthesis, light reaction 9.3% (4/43) 7.44 0.0 0.0
GO:0009575 chromoplast stroma 9.3% (4/43) 7.24 0.0 0.0
GO:0048038 quinone binding 9.3% (4/43) 6.44 0.0 2e-06
GO:0008137 NADH dehydrogenase (ubiquinone) activity 9.3% (4/43) 6.3 0.0 3e-06
GO:0003955 NAD(P)H dehydrogenase (quinone) activity 9.3% (4/43) 5.81 1e-06 1e-05
GO:0050136 NADH dehydrogenase (quinone) activity 9.3% (4/43) 5.81 1e-06 1e-05
GO:0009767 photosynthetic electron transport chain 9.3% (4/43) 5.83 1e-06 1e-05
GO:0046906 tetrapyrrole binding 16.28% (7/43) 3.71 1e-06 1.1e-05
GO:0003954 NADH dehydrogenase activity 9.3% (4/43) 5.76 1e-06 1.1e-05
GO:0015453 oxidoreduction-driven active transmembrane transporter activity 9.3% (4/43) 5.52 2e-06 1.9e-05
GO:0042773 ATP synthesis coupled electron transport 6.98% (3/43) 6.95 2e-06 1.9e-05
GO:0009523 photosystem II 9.3% (4/43) 5.47 2e-06 2e-05
GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor 9.3% (4/43) 5.17 5e-06 4.4e-05
GO:0016491 oxidoreductase activity 27.91% (12/43) 2.06 1.7e-05 0.000153
GO:0098796 membrane protein complex 16.28% (7/43) 3.06 1.8e-05 0.000158
GO:0015399 primary active transmembrane transporter activity 11.63% (5/43) 3.65 4.8e-05 0.000397
GO:0016651 oxidoreductase activity, acting on NAD(P)H 9.3% (4/43) 4.31 5e-05 0.0004
GO:0032549 ribonucleoside binding 4.65% (2/43) 7.37 6.5e-05 0.000487
GO:0010242 oxygen evolving activity 4.65% (2/43) 7.37 6.5e-05 0.000487
GO:0001882 nucleoside binding 4.65% (2/43) 6.92 0.000123 0.000898
GO:0022904 respiratory electron transport chain 6.98% (3/43) 4.86 0.000155 0.001099
GO:0015979 photosynthesis 6.98% (3/43) 4.73 0.000203 0.001399
GO:0016984 ribulose-bisphosphate carboxylase activity 2.33% (1/43) 9.83 0.0011 0.007364
GO:0016021 integral component of membrane 23.26% (10/43) 1.54 0.001778 0.011582
GO:0009522 photosystem I 4.65% (2/43) 4.97 0.001879 0.011917
GO:0022804 active transmembrane transporter activity 11.63% (5/43) 2.36 0.002751 0.017001
GO:0009570 chloroplast stroma 11.63% (5/43) 2.34 0.002943 0.017734
GO:0003899 DNA-directed 5'-3' RNA polymerase activity 4.65% (2/43) 4.62 0.003036 0.017848
GO:0009532 plastid stroma 11.63% (5/43) 2.29 0.003451 0.0198
GO:0034062 5'-3' RNA polymerase activity 4.65% (2/43) 4.44 0.003892 0.021811
GO:0097747 RNA polymerase activity 4.65% (2/43) 4.39 0.004168 0.022827
GO:0031224 intrinsic component of membrane 23.26% (10/43) 1.34 0.004763 0.025508
GO:0005753 mitochondrial proton-transporting ATP synthase complex 2.33% (1/43) 7.24 0.006583 0.033754
GO:0031090 organelle membrane 27.91% (12/43) 1.12 0.006504 0.034075
GO:0051539 4 iron, 4 sulfur cluster binding 4.65% (2/43) 3.97 0.007282 0.036563
GO:0031360 intrinsic component of thylakoid membrane 2.33% (1/43) 7.02 0.007676 0.036997
GO:0031361 integral component of thylakoid membrane 2.33% (1/43) 7.02 0.007676 0.036997
GO:0045259 proton-transporting ATP synthase complex 2.33% (1/43) 6.83 0.008768 0.041431
GO:0000287 magnesium ion binding 6.98% (3/43) 2.72 0.010571 0.048994
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_111 0.022 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_125 0.012 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_127 0.042 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_144 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_178 0.012 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_204 0.031 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_14 0.126 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_28 0.01 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_67 0.009 Orthogroups with 8 Potato genotypes Compare
Sequences (43) (download table)

InterPro Domains

GO Terms

Family Terms