SOLTUB.AGRIA.G00000031357

Description : Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein

Gene families : OG_02_0010441 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000031357
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_238

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003729	mRNA binding	IEA	AHRD
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	IEA	AHRD
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	AHRD
CC	GO:0005737	cytoplasm	IEA	AHRD
BP	GO:0006810	transport	IEA	AHRD
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006952	defense response	None	Extended
BP	GO:0006996	organelle organization	IEA	AHRD
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEA	AHRD
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008186	ATP-dependent activity, acting on RNA	IEA	AHRD
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	None	Extended
BP	GO:0009737	response to abscisic acid	IEA	AHRD
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	IEA	AHRD
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0022607	cellular component assembly	IEA	AHRD
CC	GO:0032991	protein-containing complex	IEA	AHRD
BP	GO:0033993	response to lipid	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
BP	GO:0048518	positive regulation of biological process	IEA	AHRD
BP	GO:0048519	negative regulation of biological process	IEA	AHRD
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	IEA	AHRD
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051707	response to other organism	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097305	response to alcohol	None	Extended
BP	GO:0098542	defense response to other organism	IEA	AHRD
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	IEA	AHRD
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000049	tRNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0001731	formation of translation preinitiation complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0003743	translation initiation factor activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0003924	GTPase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004407	histone deacetylase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005525	GTP binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0005829	cytosol	IEP	Predict GO terms from Neighborhoods
CC	GO:0005850	eukaryotic translation initiation factor 2 complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0006325	chromatin organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0006417	regulation of translation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006450	regulation of translational fidelity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008135	translation factor activity, RNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0008168	methyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009292	horizontal gene transfer	IEP	Predict GO terms from Neighborhoods
BP	GO:0009294	DNA-mediated transformation	IEP	Predict GO terms from Neighborhoods
BP	GO:0009889	regulation of biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009944	polarity specification of adaxial/abaxial axis	IEP	Predict GO terms from Neighborhoods
BP	GO:0010162	seed dormancy process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010556	regulation of macromolecule biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010608	post-transcriptional regulation of gene expression	IEP	Predict GO terms from Neighborhoods
CC	GO:0016282	eukaryotic 43S preinitiation complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0016462	pyrophosphatase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	Predict GO terms from Neighborhoods
MF	GO:0016787	hydrolase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016810	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	IEP	Predict GO terms from Neighborhoods
MF	GO:0016811	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	IEP	Predict GO terms from Neighborhoods
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	Predict GO terms from Neighborhoods
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	Predict GO terms from Neighborhoods
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0019001	guanyl nucleotide binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0019213	deacetylase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0022611	dormancy process	IEP	Predict GO terms from Neighborhoods
BP	GO:0022618	ribonucleoprotein complex assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0031323	regulation of cellular metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0031326	regulation of cellular biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0031369	translation initiation factor binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0032259	methylation	IEP	Predict GO terms from Neighborhoods
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0033290	eukaryotic 48S preinitiation complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0033558	protein lysine deacetylase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0034248	regulation of cellular amide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0034250	positive regulation of cellular amide metabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0043614	multi-eIF complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0045182	translation regulator activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0045727	positive regulation of translation	IEP	Predict GO terms from Neighborhoods
BP	GO:0045903	positive regulation of translational fidelity	IEP	Predict GO terms from Neighborhoods
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0065001	specification of axis polarity	IEP	Predict GO terms from Neighborhoods
CC	GO:0070993	translation preinitiation complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0071826	ribonucleoprotein complex subunit organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0080090	regulation of primary metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	Predict GO terms from Neighborhoods
MF	GO:1990856	methionyl-initiator methionine tRNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR000504	RRM_dom	306	364
IPR002075	NTF2_dom	22	138
IPR032710	NTF2-like_dom_sf	18	139
IPR035979	RBD_domain_sf	292	412

External Links

No external refs found!

SOLTUB.AGRIA.G00000031357

Expression Profile

Co-expression Networks

Functional Annotation