1. Home
  2. Species
  3. Solanum tuberosum Agria
  4. Sequence
  5. SOLTUB.AGRIA.G00000032104

SOLTUB.AGRIA.G00000032104


Description : YELLOW STRIPE like 3


Gene families : OG_02_0000205 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000032104
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_43


Type GO Term Name Evidence Source
CC GO:0005886 plasma membrane IEA AHRD
CC GO:0009526 plastid envelope IEA AHRD
CC GO:0009705 plant-type vacuole membrane IEA AHRD
BP GO:0010039 response to iron ion IEA AHRD
BP GO:0010043 response to zinc ion IEA AHRD
BP GO:0034755 iron ion transmembrane transport IEA AHRD
BP GO:0048316 seed development IEA AHRD
MF GO:0051980 iron-nicotianamine transmembrane transporter activity IEA AHRD
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000976 transcription cis-regulatory region binding IEP Predict GO terms from Neighborhoods
MF GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding IEP Predict GO terms from Neighborhoods
MF GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding IEP Predict GO terms from Neighborhoods
MF GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific IEP Predict GO terms from Neighborhoods
MF GO:0000987 cis-regulatory region sequence-specific DNA binding IEP Predict GO terms from Neighborhoods
MF GO:0001067 transcription regulatory region nucleic acid binding IEP Predict GO terms from Neighborhoods
BP GO:0001708 cell fate specification IEP Predict GO terms from Neighborhoods
CC GO:0001891 phagocytic cup IEP Predict GO terms from Neighborhoods
BP GO:0003002 regionalization IEP Predict GO terms from Neighborhoods
MF GO:0003700 DNA-binding transcription factor activity IEP Predict GO terms from Neighborhoods
MF GO:0004084 branched-chain-amino-acid transaminase activity IEP Predict GO terms from Neighborhoods
MF GO:0004185 serine-type carboxypeptidase activity IEP Predict GO terms from Neighborhoods
CC GO:0005901 caveola IEP Predict GO terms from Neighborhoods
BP GO:0006304 DNA modification IEP Predict GO terms from Neighborhoods
BP GO:0006305 DNA alkylation IEP Predict GO terms from Neighborhoods
BP GO:0006306 DNA methylation IEP Predict GO terms from Neighborhoods
BP GO:0007389 pattern specification process IEP Predict GO terms from Neighborhoods
BP GO:0007632 visual behavior IEP Predict GO terms from Neighborhoods
BP GO:0008037 cell recognition IEP Predict GO terms from Neighborhoods
BP GO:0008542 visual learning IEP Predict GO terms from Neighborhoods
MF GO:0009044 xylan 1,4-beta-xylosidase activity IEP Predict GO terms from Neighborhoods
BP GO:0009559 embryo sac central cell differentiation IEP Predict GO terms from Neighborhoods
MF GO:0009674 potassium:sodium symporter activity IEP Predict GO terms from Neighborhoods
BP GO:0009698 phenylpropanoid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009699 phenylpropanoid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009808 lignin metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009809 lignin biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009812 flavonoid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009813 flavonoid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009834 plant-type secondary cell wall biogenesis IEP Predict GO terms from Neighborhoods
BP GO:0009911 positive regulation of flower development IEP Predict GO terms from Neighborhoods
CC GO:0009930 longitudinal side of cell surface IEP Predict GO terms from Neighborhoods
BP GO:0009933 meristem structural organization IEP Predict GO terms from Neighborhoods
BP GO:0009944 polarity specification of adaxial/abaxial axis IEP Predict GO terms from Neighborhoods
BP GO:0010022 meristem determinacy IEP Predict GO terms from Neighborhoods
BP GO:0010023 proanthocyanidin biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0010048 vernalization response IEP Predict GO terms from Neighborhoods
BP GO:0010093 specification of floral organ identity IEP Predict GO terms from Neighborhoods
BP GO:0010094 specification of carpel identity IEP Predict GO terms from Neighborhoods
BP GO:0010097 specification of stamen identity IEP Predict GO terms from Neighborhoods
BP GO:0010154 fruit development IEP Predict GO terms from Neighborhoods
BP GO:0010158 abaxial cell fate specification IEP Predict GO terms from Neighborhoods
BP GO:0010214 seed coat development IEP Predict GO terms from Neighborhoods
BP GO:0010215 cellulose microfibril organization IEP Predict GO terms from Neighborhoods
BP GO:0010254 nectary development IEP Predict GO terms from Neighborhoods
BP GO:0010440 stomatal lineage progression IEP Predict GO terms from Neighborhoods
BP GO:0010447 response to acidic pH IEP Predict GO terms from Neighborhoods
BP GO:0010450 inflorescence meristem growth IEP Predict GO terms from Neighborhoods
BP GO:0010500 transmitting tissue development IEP Predict GO terms from Neighborhoods
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0010559 regulation of glycoprotein biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0010561 negative regulation of glycoprotein biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0010582 floral meristem determinacy IEP Predict GO terms from Neighborhoods
BP GO:0010622 specification of ovule identity IEP Predict GO terms from Neighborhoods
BP GO:0010874 regulation of cholesterol efflux IEP Predict GO terms from Neighborhoods
BP GO:0010875 positive regulation of cholesterol efflux IEP Predict GO terms from Neighborhoods
MF GO:0015370 solute:sodium symporter activity IEP Predict GO terms from Neighborhoods
BP GO:0016144 S-glycoside biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0018130 heterocycle biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0018149 peptide cross-linking IEP Predict GO terms from Neighborhoods
MF GO:0018675 (S)-limonene 6-monooxygenase activity IEP Predict GO terms from Neighborhoods
BP GO:0018958 phenol-containing compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0019438 aromatic compound biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0019748 secondary metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0019758 glycosinolate biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0019761 glucosinolate biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0030154 cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:0030216 keratinocyte differentiation IEP Predict GO terms from Neighborhoods
MF GO:0030226 apolipoprotein receptor activity IEP Predict GO terms from Neighborhoods
BP GO:0030324 lung development IEP Predict GO terms from Neighborhoods
BP GO:0031221 arabinan metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0031222 arabinan catabolic process IEP Predict GO terms from Neighborhoods
CC GO:0031256 leading edge membrane IEP Predict GO terms from Neighborhoods
BP GO:0031579 membrane raft organization IEP Predict GO terms from Neighborhoods
BP GO:0032371 regulation of sterol transport IEP Predict GO terms from Neighborhoods
BP GO:0032373 positive regulation of sterol transport IEP Predict GO terms from Neighborhoods
BP GO:0032374 regulation of cholesterol transport IEP Predict GO terms from Neighborhoods
BP GO:0032376 positive regulation of cholesterol transport IEP Predict GO terms from Neighborhoods
MF GO:0032442 phenylcoumaran benzylic ether reductase activity IEP Predict GO terms from Neighborhoods
CC GO:0032587 ruffle membrane IEP Predict GO terms from Neighborhoods
MF GO:0034188 apolipoprotein A-I receptor activity IEP Predict GO terms from Neighborhoods
BP GO:0034249 negative regulation of cellular amide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0034406 cell wall beta-glucan metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0034410 cell wall beta-glucan biosynthetic process IEP Predict GO terms from Neighborhoods
MF GO:0035197 siRNA binding IEP Predict GO terms from Neighborhoods
MF GO:0038024 cargo receptor activity IEP Predict GO terms from Neighborhoods
BP GO:0038027 apolipoprotein A-I-mediated signaling pathway IEP Predict GO terms from Neighborhoods
CC GO:0042599 lamellar body IEP Predict GO terms from Neighborhoods
BP GO:0042984 regulation of amyloid precursor protein biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0042985 negative regulation of amyloid precursor protein biosynthetic process IEP Predict GO terms from Neighborhoods
CC GO:0043076 megasporocyte nucleus IEP Predict GO terms from Neighborhoods
CC GO:0043078 polar nucleus IEP Predict GO terms from Neighborhoods
MF GO:0043565 sequence-specific DNA binding IEP Predict GO terms from Neighborhoods
BP GO:0044550 secondary metabolite biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0044728 DNA methylation or demethylation IEP Predict GO terms from Neighborhoods
CC GO:0044853 plasma membrane raft IEP Predict GO terms from Neighborhoods
BP GO:0044857 plasma membrane raft organization IEP Predict GO terms from Neighborhoods
BP GO:0045493 xylan catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0045806 negative regulation of endocytosis IEP Predict GO terms from Neighborhoods
BP GO:0046189 phenol-containing compound biosynthetic process IEP Predict GO terms from Neighborhoods
MF GO:0046556 alpha-L-arabinofuranosidase activity IEP Predict GO terms from Neighborhoods
BP GO:0046688 response to copper ion IEP Predict GO terms from Neighborhoods
CC GO:0048226 Casparian strip IEP Predict GO terms from Neighborhoods
BP GO:0048281 inflorescence morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0048283 indeterminate inflorescence morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0048449 floral organ formation IEP Predict GO terms from Neighborhoods
BP GO:0048455 stamen formation IEP Predict GO terms from Neighborhoods
BP GO:0048459 floral whorl structural organization IEP Predict GO terms from Neighborhoods
BP GO:0048479 style development IEP Predict GO terms from Neighborhoods
BP GO:0048481 plant ovule development IEP Predict GO terms from Neighborhoods
BP GO:0048509 regulation of meristem development IEP Predict GO terms from Neighborhoods
BP GO:0048532 anatomical structure arrangement IEP Predict GO terms from Neighborhoods
BP GO:0048533 sporocyte differentiation IEP Predict GO terms from Neighborhoods
BP GO:0048544 recognition of pollen IEP Predict GO terms from Neighborhoods
BP GO:0048609 multicellular organismal reproductive process IEP Predict GO terms from Neighborhoods
BP GO:0048832 specification of plant organ number IEP Predict GO terms from Neighborhoods
BP GO:0048833 specification of floral organ number IEP Predict GO terms from Neighborhoods
BP GO:0048869 cellular developmental process IEP Predict GO terms from Neighborhoods
MF GO:0050664 oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor IEP Predict GO terms from Neighborhoods
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0052324 plant-type cell wall cellulose biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0052541 plant-type cell wall cellulose metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0060099 regulation of phagocytosis, engulfment IEP Predict GO terms from Neighborhoods
BP GO:0060100 positive regulation of phagocytosis, engulfment IEP Predict GO terms from Neighborhoods
BP GO:0060147 regulation of post-transcriptional gene silencing IEP Predict GO terms from Neighborhoods
BP GO:0060148 positive regulation of post-transcriptional gene silencing IEP Predict GO terms from Neighborhoods
BP GO:0060320 rejection of self pollen IEP Predict GO terms from Neighborhoods
BP GO:0060964 regulation of miRNA-mediated gene silencing IEP Predict GO terms from Neighborhoods
BP GO:0060966 regulation of gene silencing by RNA IEP Predict GO terms from Neighborhoods
BP GO:0065001 specification of axis polarity IEP Predict GO terms from Neighborhoods
MF GO:0070008 serine-type exopeptidase activity IEP Predict GO terms from Neighborhoods
BP GO:0070374 positive regulation of ERK1 and ERK2 cascade IEP Predict GO terms from Neighborhoods
BP GO:0080112 seed growth IEP Predict GO terms from Neighborhoods
BP GO:0090701 specification of plant organ identity IEP Predict GO terms from Neighborhoods
BP GO:0090706 specification of plant organ position IEP Predict GO terms from Neighborhoods
CC GO:0097208 alveolar lamellar body IEP Predict GO terms from Neighborhoods
CC GO:0097232 lamellar body membrane IEP Predict GO terms from Neighborhoods
BP GO:0097242 amyloid-beta clearance IEP Predict GO terms from Neighborhoods
CC GO:0097386 glial cell projection IEP Predict GO terms from Neighborhoods
MF GO:0097599 xylanase activity IEP Predict GO terms from Neighborhoods
BP GO:0099402 plant organ development IEP Predict GO terms from Neighborhoods
MF GO:0140110 transcription regulator activity IEP Predict GO terms from Neighborhoods
BP GO:0150094 amyloid-beta clearance by cellular catabolic process IEP Predict GO terms from Neighborhoods
BP GO:1900037 regulation of cellular response to hypoxia IEP Predict GO terms from Neighborhoods
BP GO:1900101 regulation of endoplasmic reticulum unfolded protein response IEP Predict GO terms from Neighborhoods
BP GO:1900102 negative regulation of endoplasmic reticulum unfolded protein response IEP Predict GO terms from Neighborhoods
BP GO:1900221 regulation of amyloid-beta clearance IEP Predict GO terms from Neighborhoods
BP GO:1900223 positive regulation of amyloid-beta clearance IEP Predict GO terms from Neighborhoods
BP GO:1900368 regulation of post-transcriptional gene silencing by RNA IEP Predict GO terms from Neighborhoods
BP GO:1900370 positive regulation of post-transcriptional gene silencing by RNA IEP Predict GO terms from Neighborhoods
BP GO:1901074 regulation of engulfment of apoptotic cell IEP Predict GO terms from Neighborhoods
BP GO:1901076 positive regulation of engulfment of apoptotic cell IEP Predict GO terms from Neighborhoods
BP GO:1901362 organic cyclic compound biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:1901615 organic hydroxy compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1901617 organic hydroxy compound biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:1902003 regulation of amyloid-beta formation IEP Predict GO terms from Neighborhoods
BP GO:1902039 negative regulation of seed dormancy process IEP Predict GO terms from Neighborhoods
BP GO:1902183 regulation of shoot apical meristem development IEP Predict GO terms from Neighborhoods
BP GO:1902430 negative regulation of amyloid-beta formation IEP Predict GO terms from Neighborhoods
BP GO:1902991 regulation of amyloid precursor protein catabolic process IEP Predict GO terms from Neighborhoods
BP GO:1902992 negative regulation of amyloid precursor protein catabolic process IEP Predict GO terms from Neighborhoods
BP GO:1902994 regulation of phospholipid efflux IEP Predict GO terms from Neighborhoods
BP GO:1902995 positive regulation of phospholipid efflux IEP Predict GO terms from Neighborhoods
BP GO:1903018 regulation of glycoprotein metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1903019 negative regulation of glycoprotein metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1903573 negative regulation of response to endoplasmic reticulum stress IEP Predict GO terms from Neighborhoods
BP GO:1903897 regulation of PERK-mediated unfolded protein response IEP Predict GO terms from Neighborhoods
BP GO:1903898 negative regulation of PERK-mediated unfolded protein response IEP Predict GO terms from Neighborhoods
BP GO:1904159 megasporocyte differentiation IEP Predict GO terms from Neighborhoods
BP GO:1905153 regulation of membrane invagination IEP Predict GO terms from Neighborhoods
BP GO:1905155 positive regulation of membrane invagination IEP Predict GO terms from Neighborhoods
BP GO:1990058 fruit replum development IEP Predict GO terms from Neighborhoods
MF GO:1990837 sequence-specific double-stranded DNA binding IEP Predict GO terms from Neighborhoods
BP GO:2000008 regulation of protein localization to cell surface IEP Predict GO terms from Neighborhoods
BP GO:2000010 positive regulation of protein localization to cell surface IEP Predict GO terms from Neighborhoods
BP GO:2000024 regulation of leaf development IEP Predict GO terms from Neighborhoods
BP GO:2000113 negative regulation of cellular macromolecule biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:2000425 regulation of apoptotic cell clearance IEP Predict GO terms from Neighborhoods
BP GO:2000427 positive regulation of apoptotic cell clearance IEP Predict GO terms from Neighborhoods
BP GO:2000895 hemicellulose catabolic process IEP Predict GO terms from Neighborhoods
BP GO:2001138 regulation of phospholipid transport IEP Predict GO terms from Neighborhoods
BP GO:2001140 positive regulation of phospholipid transport IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR004813 OPT 35 642
IPR004813 OPT 31 641
No external refs found!