SOLTUB.AGRIA.G00000003281

Description : Pentatricopeptide repeat-containing protein, putative

Gene families : OG_02_0018257 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000003281
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_244

Type	GO Term	Name	Evidence	Source
BP	GO:0000959	mitochondrial RNA metabolic process	None	Extended
BP	GO:0003002	regionalization	None	Extended
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003729	mRNA binding	IEA	AHRD
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004518	nuclease activity	None	Extended
MF	GO:0004519	endonuclease activity	IEA	AHRD
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0007389	pattern specification process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	None	Extended
CC	GO:0009507	chloroplast	IEA	AHRD
CC	GO:0009536	plastid	None	Extended
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009791	post-embryonic development	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010051	xylem and phloem pattern formation	IEA	AHRD
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0016556	mRNA modification	IEA	AHRD
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048316	seed development	IEA	AHRD
BP	GO:0048366	leaf development	IEA	AHRD
BP	GO:0048608	reproductive structure development	None	Extended
BP	GO:0048827	phyllome development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0090698	post-embryonic plant morphogenesis	IEA	AHRD
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0099402	plant organ development	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1900864	mitochondrial RNA modification	IEA	AHRD
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1905392	plant organ morphogenesis	IEA	AHRD

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Type	GO Term	Name	Evidence	Source
BP	GO:0000082	G1/S transition of mitotic cell cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:0000278	mitotic cell cycle	IEP	Predict GO terms from Neighborhoods
MF	GO:0000339	RNA cap binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0000340	RNA 7-methylguanosine cap binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0000418	RNA polymerase IV complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0000419	RNA polymerase V complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0000428	DNA-directed RNA polymerase complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0000776	kinetochore	IEP	Predict GO terms from Neighborhoods
MF	GO:0001054	RNA polymerase I activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0001055	RNA polymerase II activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0001056	RNA polymerase III activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0001172	RNA-templated transcription	IEP	Predict GO terms from Neighborhoods
CC	GO:0001650	fibrillar center	IEP	Predict GO terms from Neighborhoods
BP	GO:0001662	behavioral fear response	IEP	Predict GO terms from Neighborhoods
BP	GO:0002209	behavioral defense response	IEP	Predict GO terms from Neighborhoods
MF	GO:0003743	translation initiation factor activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0003968	RNA-directed 5'-3' RNA polymerase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004551	dinucleotide phosphatase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005665	RNA polymerase II, core complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0005666	RNA polymerase III complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0005736	RNA polymerase I complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0005749	mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)	IEP	Predict GO terms from Neighborhoods
CC	GO:0005816	spindle pole body	IEP	Predict GO terms from Neighborhoods
CC	GO:0005829	cytosol	IEP	Predict GO terms from Neighborhoods
CC	GO:0005845	mRNA cap binding complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0005940	septin ring	IEP	Predict GO terms from Neighborhoods
BP	GO:0006099	tricarboxylic acid cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:0006195	purine nucleotide catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006203	dGTP catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006354	DNA-templated transcription elongation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006360	transcription by RNA polymerase I	IEP	Predict GO terms from Neighborhoods
BP	GO:0006366	transcription by RNA polymerase II	IEP	Predict GO terms from Neighborhoods
BP	GO:0006383	transcription by RNA polymerase III	IEP	Predict GO terms from Neighborhoods
BP	GO:0006413	translational initiation	IEP	Predict GO terms from Neighborhoods
MF	GO:0008413	8-oxo-7,8-dihydroguanosine triphosphate pyrophosphatase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009143	nucleoside triphosphate catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009146	purine nucleoside triphosphate catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009151	purine deoxyribonucleotide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009155	purine deoxyribonucleotide catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009166	nucleotide catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009200	deoxyribonucleoside triphosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009204	deoxyribonucleoside triphosphate catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009215	purine deoxyribonucleoside triphosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009217	purine deoxyribonucleoside triphosphate catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009262	deoxyribonucleotide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009264	deoxyribonucleotide catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009304	tRNA transcription	IEP	Predict GO terms from Neighborhoods
BP	GO:0009394	2'-deoxyribonucleotide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009894	regulation of catabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0016281	eukaryotic translation initiation factor 4F complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0016442	RISC complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0016605	PML body	IEP	Predict GO terms from Neighborhoods
BP	GO:0016925	protein sumoylation	IEP	Predict GO terms from Neighborhoods
MF	GO:0017110	nucleoside diphosphate phosphatase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0019177	dihydroneopterin triphosphate pyrophosphohydrolase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0019692	deoxyribose phosphate metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0019789	SUMO transferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0030097	hemopoiesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0030162	regulation of proteolysis	IEP	Predict GO terms from Neighborhoods
BP	GO:0030324	lung development	IEP	Predict GO terms from Neighborhoods
CC	GO:0030532	small nuclear ribonucleoprotein complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0030880	RNA polymerase complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0030998	linear element	IEP	Predict GO terms from Neighborhoods
BP	GO:0031057	negative regulation of histone modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0031061	negative regulation of histone methylation	IEP	Predict GO terms from Neighborhoods
CC	GO:0031332	RNAi effector complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0031369	translation initiation factor binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0031370	eukaryotic initiation factor 4G binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0031386	protein tag	IEP	Predict GO terms from Neighborhoods
BP	GO:0031960	response to corticosteroid	IEP	Predict GO terms from Neighborhoods
CC	GO:0032156	septin cytoskeleton	IEP	Predict GO terms from Neighborhoods
CC	GO:0033391	chromatoid body	IEP	Predict GO terms from Neighborhoods
BP	GO:0033555	multicellular organismal response to stress	IEP	Predict GO terms from Neighborhoods
BP	GO:0034059	response to anoxia	IEP	Predict GO terms from Neighborhoods
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0034518	RNA cap binding complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0035539	8-oxo-7,8-dihydrodeoxyguanosine triphosphate pyrophosphatase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0042254	ribosome biogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0042262	DNA protection	IEP	Predict GO terms from Neighborhoods
BP	GO:0042596	fear response	IEP	Predict GO terms from Neighborhoods
BP	GO:0042797	tRNA transcription by RNA polymerase III	IEP	Predict GO terms from Neighborhoods
BP	GO:0043392	negative regulation of DNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0043433	negative regulation of DNA-binding transcription factor activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0044732	mitotic spindle pole body	IEP	Predict GO terms from Neighborhoods
BP	GO:0044772	mitotic cell cycle phase transition	IEP	Predict GO terms from Neighborhoods
BP	GO:0044843	cell cycle G1/S phase transition	IEP	Predict GO terms from Neighborhoods
CC	GO:0045257	succinate dehydrogenase complex (ubiquinone)	IEP	Predict GO terms from Neighborhoods
CC	GO:0045281	succinate dehydrogenase complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0045283	fumarate reductase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0045292	mRNA cis splicing, via spliceosome	IEP	Predict GO terms from Neighborhoods
BP	GO:0045664	regulation of neuron differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0045665	negative regulation of neuron differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0046070	dGTP metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046386	deoxyribose phosphate catabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0046540	U4/U6 x U5 tri-snRNP complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0047429	nucleoside triphosphate diphosphatase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0051100	negative regulation of binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0051101	regulation of DNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0051246	regulation of protein metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051248	negative regulation of protein metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051384	response to glucocorticoid	IEP	Predict GO terms from Neighborhoods
BP	GO:0051569	regulation of histone H3-K4 methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0051572	negative regulation of histone H3-K4 methylation	IEP	Predict GO terms from Neighborhoods
CC	GO:0055029	nuclear DNA-directed RNA polymerase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0060216	definitive hemopoiesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0060623	regulation of chromosome condensation	IEP	Predict GO terms from Neighborhoods
BP	GO:0071383	cellular response to steroid hormone stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0071384	cellular response to corticosteroid stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0071385	cellular response to glucocorticoid stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0071548	response to dexamethasone	IEP	Predict GO terms from Neighborhoods
BP	GO:0071549	cellular response to dexamethasone stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0072523	purine-containing compound catabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0097525	spliceosomal snRNP complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0097526	spliceosomal tri-snRNP complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0097747	RNA polymerase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0098781	ncRNA transcription	IEP	Predict GO terms from Neighborhoods
CC	GO:0098803	respiratory chain complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0099080	supramolecular complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0099086	synaptonemal structure	IEP	Predict GO terms from Neighborhoods
BP	GO:0099170	postsynaptic modulation of chemical synaptic transmission	IEP	Predict GO terms from Neighborhoods
CC	GO:0099522	cytosolic region	IEP	Predict GO terms from Neighborhoods
CC	GO:0099524	postsynaptic cytosol	IEP	Predict GO terms from Neighborhoods
BP	GO:0099547	regulation of translation at synapse, modulating synaptic transmission	IEP	Predict GO terms from Neighborhoods
BP	GO:0099578	regulation of translation at postsynapse, modulating synaptic transmission	IEP	Predict GO terms from Neighborhoods
CC	GO:0120114	Sm-like protein family complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0140243	regulation of translation at synapse	IEP	Predict GO terms from Neighborhoods
BP	GO:0140245	regulation of translation at postsynapse	IEP	Predict GO terms from Neighborhoods
CC	GO:0140535	intracellular protein-containing complex	IEP	Predict GO terms from Neighborhoods
BP	GO:1900180	regulation of protein localization to nucleus	IEP	Predict GO terms from Neighborhoods
BP	GO:1901655	cellular response to ketone	IEP	Predict GO terms from Neighborhoods
BP	GO:1903050	regulation of proteolysis involved in protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1903379	regulation of mitotic chromosome condensation	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	132	158
IPR002885	Pentatricopeptide_repeat	501	527
IPR002885	Pentatricopeptide_repeat	466	494
IPR002885	Pentatricopeptide_repeat	539	562
IPR002885	Pentatricopeptide_repeat	160	190
IPR002885	Pentatricopeptide_repeat	231	253
IPR002885	Pentatricopeptide_repeat	57	104
IPR002885	Pentatricopeptide_repeat	362	409
IPR002885	Pentatricopeptide_repeat	260	306
IPR002885	Pentatricopeptide_repeat	60	93
IPR002885	Pentatricopeptide_repeat	262	295
IPR002885	Pentatricopeptide_repeat	132	159
IPR002885	Pentatricopeptide_repeat	501	534
IPR002885	Pentatricopeptide_repeat	466	499

External Links

No external refs found!

SOLTUB.AGRIA.G00000003281

Expression Profile

Co-expression Networks

Functional Annotation