SOLTUB.AGRIA.G00000032987

Description : Ubiquitin carboxyl-terminal hydrolase family protein

Gene families : OG_02_0004994 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000032987
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_260

Type	GO Term	Name	Evidence	Source
BP	GO:0000018	regulation of DNA recombination	None	Extended
BP	GO:0000122	negative regulation of transcription by RNA polymerase II	IEA	AHRD
CC	GO:0000151	ubiquitin ligase complex	None	Extended
CC	GO:0000152	nuclear ubiquitin ligase complex	None	Extended
BP	GO:0001558	regulation of cell growth	IEA	AHRD
BP	GO:0001932	regulation of protein phosphorylation	None	Extended
BP	GO:0001934	positive regulation of protein phosphorylation	None	Extended
BP	GO:0002637	regulation of immunoglobulin production	None	Extended
BP	GO:0002639	positive regulation of immunoglobulin production	None	Extended
BP	GO:0002682	regulation of immune system process	None	Extended
BP	GO:0002684	positive regulation of immune system process	None	Extended
BP	GO:0002694	regulation of leukocyte activation	None	Extended
BP	GO:0002696	positive regulation of leukocyte activation	None	Extended
BP	GO:0002697	regulation of immune effector process	None	Extended
BP	GO:0002699	positive regulation of immune effector process	None	Extended
BP	GO:0002700	regulation of production of molecular mediator of immune response	None	Extended
BP	GO:0002702	positive regulation of production of molecular mediator of immune response	None	Extended
BP	GO:0002703	regulation of leukocyte mediated immunity	None	Extended
BP	GO:0002705	positive regulation of leukocyte mediated immunity	None	Extended
BP	GO:0002706	regulation of lymphocyte mediated immunity	None	Extended
BP	GO:0002708	positive regulation of lymphocyte mediated immunity	None	Extended
BP	GO:0002712	regulation of B cell mediated immunity	None	Extended
BP	GO:0002714	positive regulation of B cell mediated immunity	None	Extended
BP	GO:0002819	regulation of adaptive immune response	None	Extended
BP	GO:0002821	positive regulation of adaptive immune response	None	Extended
BP	GO:0002822	regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains	None	Extended
BP	GO:0002824	positive regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains	None	Extended
BP	GO:0002889	regulation of immunoglobulin mediated immune response	None	Extended
BP	GO:0002891	positive regulation of immunoglobulin mediated immune response	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	AHRD
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005680	anaphase-promoting complex	IEA	AHRD
CC	GO:0005694	chromosome	IEA	AHRD
CC	GO:0005730	nucleolus	IEA	AHRD
CC	GO:0005819	spindle	IEA	AHRD
CC	GO:0005829	cytosol	IEA	AHRD
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006282	regulation of DNA repair	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	None	Extended
BP	GO:0006357	regulation of transcription by RNA polymerase II	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0007015	actin filament organization	IEA	AHRD
BP	GO:0007162	negative regulation of cell adhesion	None	Extended
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0007346	regulation of mitotic cell cycle	None	Extended
MF	GO:0008134	transcription factor binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008380	RNA splicing	IEA	AHRD
MF	GO:0008432	JUN kinase binding	IEA	AHRD
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009411	response to UV	None	Extended
BP	GO:0009416	response to light stimulus	None	Extended
CC	GO:0009536	plastid	IEA	AHRD
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009794	regulation of mitotic cell cycle, embryonic	IEA	AHRD
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009890	negative regulation of biosynthetic process	None	Extended
BP	GO:0009891	positive regulation of biosynthetic process	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0009894	regulation of catabolic process	None	Extended
BP	GO:0009895	negative regulation of catabolic process	None	Extended
BP	GO:0009966	regulation of signal transduction	None	Extended
BP	GO:0009968	negative regulation of signal transduction	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010224	response to UV-B	IEA	AHRD
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010558	negative regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010562	positive regulation of phosphorus metabolic process	None	Extended
BP	GO:0010569	regulation of double-strand break repair via homologous recombination	None	Extended
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010628	positive regulation of gene expression	None	Extended
BP	GO:0010646	regulation of cell communication	None	Extended
BP	GO:0010648	negative regulation of cell communication	None	Extended
BP	GO:0010717	regulation of epithelial to mesenchymal transition	None	Extended
BP	GO:0010719	negative regulation of epithelial to mesenchymal transition	IEA	AHRD
BP	GO:0010944	negative regulation of transcription by competitive promoter binding	IEA	AHRD
CC	GO:0016035	zeta DNA polymerase complex	IEA	AHRD
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019220	regulation of phosphate metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
MF	GO:0019899	enzyme binding	None	Extended
MF	GO:0019900	kinase binding	None	Extended
MF	GO:0019901	protein kinase binding	None	Extended
BP	GO:0022407	regulation of cell-cell adhesion	None	Extended
BP	GO:0022408	negative regulation of cell-cell adhesion	None	Extended
BP	GO:0023051	regulation of signaling	None	Extended
BP	GO:0023057	negative regulation of signaling	None	Extended
BP	GO:0030111	regulation of Wnt signaling pathway	None	Extended
BP	GO:0030155	regulation of cell adhesion	None	Extended
BP	GO:0030178	negative regulation of Wnt signaling pathway	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031324	negative regulation of cellular metabolic process	None	Extended
BP	GO:0031325	positive regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031327	negative regulation of cellular biosynthetic process	None	Extended
BP	GO:0031328	positive regulation of cellular biosynthetic process	None	Extended
BP	GO:0031396	regulation of protein ubiquitination	None	Extended
BP	GO:0031397	negative regulation of protein ubiquitination	None	Extended
BP	GO:0031399	regulation of protein modification process	None	Extended
BP	GO:0031400	negative regulation of protein modification process	None	Extended
BP	GO:0031401	positive regulation of protein modification process	None	Extended
CC	GO:0031461	cullin-RING ubiquitin ligase complex	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033135	regulation of peptidyl-serine phosphorylation	None	Extended
BP	GO:0033138	positive regulation of peptidyl-serine phosphorylation	IEA	AHRD
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0035556	intracellular signal transduction	None	Extended
BP	GO:0040008	regulation of growth	None	Extended
BP	GO:0042176	regulation of protein catabolic process	None	Extended
BP	GO:0042177	negative regulation of protein catabolic process	IEA	AHRD
BP	GO:0042325	regulation of phosphorylation	None	Extended
BP	GO:0042327	positive regulation of phosphorylation	None	Extended
CC	GO:0042575	DNA polymerase complex	None	Extended
BP	GO:0042770	signal transduction in response to DNA damage	None	Extended
BP	GO:0042772	DNA damage response, signal transduction resulting in transcription	IEA	AHRD
MF	GO:0042802	identical protein binding	IEA	AHRD
BP	GO:0043086	negative regulation of catalytic activity	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043392	negative regulation of DNA binding	None	Extended
BP	GO:0043393	regulation of protein binding	IEA	AHRD
BP	GO:0043433	negative regulation of DNA-binding transcription factor activity	IEA	AHRD
BP	GO:0044092	negative regulation of molecular function	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0045191	regulation of isotype switching	None	Extended
BP	GO:0045595	regulation of cell differentiation	None	Extended
BP	GO:0045596	negative regulation of cell differentiation	None	Extended
BP	GO:0045738	negative regulation of DNA repair	None	Extended
BP	GO:0045739	positive regulation of DNA repair	None	Extended
BP	GO:0045830	positive regulation of isotype switching	IEA	AHRD
BP	GO:0045892	negative regulation of DNA-templated transcription	None	Extended
BP	GO:0045893	positive regulation of DNA-templated transcription	IEA	AHRD
BP	GO:0045910	negative regulation of DNA recombination	None	Extended
BP	GO:0045911	positive regulation of DNA recombination	None	Extended
BP	GO:0045934	negative regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0045937	positive regulation of phosphate metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0048583	regulation of response to stimulus	None	Extended
BP	GO:0048584	positive regulation of response to stimulus	None	Extended
BP	GO:0048585	negative regulation of response to stimulus	None	Extended
BP	GO:0050776	regulation of immune response	None	Extended
BP	GO:0050778	positive regulation of immune response	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050790	regulation of catalytic activity	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050864	regulation of B cell activation	None	Extended
BP	GO:0050865	regulation of cell activation	None	Extended
BP	GO:0050867	positive regulation of cell activation	None	Extended
BP	GO:0050871	positive regulation of B cell activation	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051052	regulation of DNA metabolic process	None	Extended
BP	GO:0051053	negative regulation of DNA metabolic process	None	Extended
BP	GO:0051054	positive regulation of DNA metabolic process	None	Extended
BP	GO:0051090	regulation of DNA-binding transcription factor activity	None	Extended
BP	GO:0051093	negative regulation of developmental process	None	Extended
BP	GO:0051094	positive regulation of developmental process	None	Extended
BP	GO:0051098	regulation of binding	None	Extended
BP	GO:0051100	negative regulation of binding	None	Extended
BP	GO:0051101	regulation of DNA binding	None	Extended
BP	GO:0051128	regulation of cellular component organization	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051172	negative regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051174	regulation of phosphorus metabolic process	None	Extended
BP	GO:0051239	regulation of multicellular organismal process	None	Extended
BP	GO:0051240	positive regulation of multicellular organismal process	None	Extended
BP	GO:0051241	negative regulation of multicellular organismal process	None	Extended
BP	GO:0051246	regulation of protein metabolic process	None	Extended
BP	GO:0051247	positive regulation of protein metabolic process	None	Extended
BP	GO:0051248	negative regulation of protein metabolic process	None	Extended
BP	GO:0051249	regulation of lymphocyte activation	None	Extended
BP	GO:0051251	positive regulation of lymphocyte activation	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051253	negative regulation of RNA metabolic process	None	Extended
BP	GO:0051254	positive regulation of RNA metabolic process	None	Extended
BP	GO:0051338	regulation of transferase activity	None	Extended
BP	GO:0051348	negative regulation of transferase activity	None	Extended
BP	GO:0051438	regulation of ubiquitin-protein transferase activity	None	Extended
BP	GO:0051444	negative regulation of ubiquitin-protein transferase activity	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0051726	regulation of cell cycle	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0060828	regulation of canonical Wnt signaling pathway	None	Extended
MF	GO:0061629	RNA polymerase II-specific DNA-binding transcription factor binding	IEA	AHRD
CC	GO:0061695	transferase complex, transferring phosphorus-containing groups	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065009	regulation of molecular function	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0080134	regulation of response to stress	None	Extended
BP	GO:0080135	regulation of cellular response to stress	None	Extended
BP	GO:0090090	negative regulation of canonical Wnt signaling pathway	IEA	AHRD
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097435	supramolecular fiber organization	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140297	DNA-binding transcription factor binding	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
CC	GO:0140535	intracellular protein-containing complex	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
BP	GO:1902679	negative regulation of RNA biosynthetic process	None	Extended
BP	GO:1902680	positive regulation of RNA biosynthetic process	None	Extended
BP	GO:1903320	regulation of protein modification by small protein conjugation or removal	None	Extended
BP	GO:1903321	negative regulation of protein modification by small protein conjugation or removal	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1903507	negative regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1904666	regulation of ubiquitin protein ligase activity	None	Extended
BP	GO:1904667	negative regulation of ubiquitin protein ligase activity	IEA	AHRD
CC	GO:1990234	transferase complex	None	Extended
BP	GO:2000042	negative regulation of double-strand break repair via homologous recombination	IEA	AHRD
BP	GO:2000047	regulation of cell-cell adhesion mediated by cadherin	None	Extended
BP	GO:2000048	negative regulation of cell-cell adhesion mediated by cadherin	IEA	AHRD
BP	GO:2000677	regulation of transcription regulatory region DNA binding	None	Extended
BP	GO:2000678	negative regulation of transcription regulatory region DNA binding	IEA	AHRD
BP	GO:2000779	regulation of double-strand break repair	None	Extended
BP	GO:2000780	negative regulation of double-strand break repair	None	Extended
BP	GO:2000781	positive regulation of double-strand break repair	None	Extended
BP	GO:2001020	regulation of response to DNA damage stimulus	None	Extended
BP	GO:2001021	negative regulation of response to DNA damage stimulus	None	Extended
BP	GO:2001022	positive regulation of response to DNA damage stimulus	None	Extended
BP	GO:2001032	regulation of double-strand break repair via nonhomologous end joining	None	Extended
BP	GO:2001034	positive regulation of double-strand break repair via nonhomologous end joining	IEA	AHRD
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000209	protein polyubiquitination	IEP	Predict GO terms from Neighborhoods
BP	GO:0002097	tRNA wobble base modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0002098	tRNA wobble uridine modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0002143	tRNA wobble position uridine thiolation	IEP	Predict GO terms from Neighborhoods
MF	GO:0005521	lamin binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0005652	nuclear lamina	IEP	Predict GO terms from Neighborhoods
CC	GO:0005700	polytene chromosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0005778	peroxisomal membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0006400	tRNA modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0006508	proteolysis	IEP	Predict GO terms from Neighborhoods
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006625	protein targeting to peroxisome	IEP	Predict GO terms from Neighborhoods
BP	GO:0006997	nucleus organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0007031	peroxisome organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0007059	chromosome segregation	IEP	Predict GO terms from Neighborhoods
BP	GO:0007060	male meiosis chromosome segregation	IEP	Predict GO terms from Neighborhoods
BP	GO:0009057	macromolecule catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010032	meiotic chromosome condensation	IEP	Predict GO terms from Neighborhoods
BP	GO:0015919	peroxisomal membrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0016558	protein import into peroxisome matrix	IEP	Predict GO terms from Neighborhoods
BP	GO:0016567	protein ubiquitination	IEP	Predict GO terms from Neighborhoods
MF	GO:0016782	transferase activity, transferring sulphur-containing groups	IEP	Predict GO terms from Neighborhoods
MF	GO:0016783	sulfurtransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0016925	protein sumoylation	IEP	Predict GO terms from Neighborhoods
MF	GO:0019789	SUMO transferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0019941	modification-dependent protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0030261	chromosome condensation	IEP	Predict GO terms from Neighborhoods
CC	GO:0031903	microbody membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0032446	protein modification by small protein conjugation	IEP	Predict GO terms from Neighborhoods
BP	GO:0034227	tRNA thio-modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0043574	peroxisomal transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0043632	modification-dependent macromolecule catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0044265	cellular macromolecule catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0044743	protein transmembrane import into intracellular organelle	IEP	Predict GO terms from Neighborhoods
BP	GO:0045132	meiotic chromosome segregation	IEP	Predict GO terms from Neighborhoods
BP	GO:0051299	centrosome separation	IEP	Predict GO terms from Neighborhoods
BP	GO:0051603	proteolysis involved in protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0065002	intracellular protein transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0070192	chromosome organization involved in meiotic cell cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	Predict GO terms from Neighborhoods
BP	GO:0071472	cellular response to salt stress	IEP	Predict GO terms from Neighborhoods
BP	GO:0071763	nuclear membrane organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0071806	protein transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0072662	protein localization to peroxisome	IEP	Predict GO terms from Neighborhoods
BP	GO:0072663	establishment of protein localization to peroxisome	IEP	Predict GO terms from Neighborhoods
BP	GO:0098813	nuclear chromosome segregation	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR021099	PORR_domain	87	417
IPR036570	HORMA_dom_sf	475	654
IPR003511	HORMA_dom	479	571

External Links

No external refs found!

SOLTUB.AGRIA.G00000032987

Expression Profile

Co-expression Networks

Functional Annotation