Coexpression cluster: Cluster_260 (HCCA Clusters (HRR 50 & PCC 0.5))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0016836 hydro-lyase activity 7.46% (5/67) 4.24 7e-06 0.002623
GO:0016054 organic acid catabolic process 10.45% (7/67) 3.32 7e-06 0.002903
GO:0048870 cell motility 8.96% (6/67) 3.74 6e-06 0.003385
GO:0046395 carboxylic acid catabolic process 10.45% (7/67) 3.48 3e-06 0.003633
GO:0006635 fatty acid beta-oxidation 5.97% (4/67) 5.17 5e-06 0.003668
GO:0043167 ion binding 43.28% (29/67) 1.25 2e-06 0.003769
GO:0003674 molecular_function 83.58% (56/67) 0.48 2.3e-05 0.005815
GO:0019395 fatty acid oxidation 5.97% (4/67) 4.56 2.6e-05 0.005857
GO:0009062 fatty acid catabolic process 5.97% (4/67) 4.68 1.9e-05 0.006002
GO:0005829 cytosol 34.33% (23/67) 1.27 3e-05 0.006039
GO:0072329 monocarboxylic acid catabolic process 7.46% (5/67) 3.9 2.2e-05 0.006151
GO:0005515 protein binding 62.69% (42/67) 0.73 3.3e-05 0.006185
GO:0016477 cell migration 7.46% (5/67) 3.72 4e-05 0.006881
GO:0002102 podosome 2.99% (2/67) 7.6 4.3e-05 0.006888
GO:0034440 lipid oxidation 5.97% (4/67) 4.31 5.2e-05 0.007282
GO:0009987 cellular process 76.12% (51/67) 0.54 4.9e-05 0.007322
GO:0046872 metal ion binding 28.36% (19/67) 1.39 6e-05 0.007836
GO:0006082 organic acid metabolic process 22.39% (15/67) 1.64 6.5e-05 0.008092
GO:0044282 small molecule catabolic process 10.45% (7/67) 2.78 7.1e-05 0.008383
GO:0043169 cation binding 28.36% (19/67) 1.36 8.2e-05 0.009095
GO:0006102 isocitrate metabolic process 2.99% (2/67) 6.87 0.000129 0.010286
GO:0008692 3-hydroxybutyryl-CoA epimerase activity 2.99% (2/67) 6.87 0.000129 0.010286
GO:0016856 racemase and epimerase activity, acting on hydroxy acids and derivatives 2.99% (2/67) 6.87 0.000129 0.010286
GO:0018812 3-hydroxyacyl-CoA dehydratase activity 2.99% (2/67) 6.87 0.000129 0.010286
GO:0048513 animal organ development 13.43% (9/67) 2.25 0.000111 0.010331
GO:0016508 long-chain-enoyl-CoA hydratase activity 2.99% (2/67) 7.02 0.000103 0.010485
GO:0019752 carboxylic acid metabolic process 19.4% (13/67) 1.74 0.000108 0.010494
GO:0043436 oxoacid metabolic process 20.9% (14/67) 1.62 0.000137 0.010571
GO:0005488 binding 73.13% (49/67) 0.55 0.0001 0.010621
GO:0006812 cation transport 11.94% (8/67) 2.36 0.000162 0.010968
GO:0044248 cellular catabolic process 20.9% (14/67) 1.6 0.000162 0.011295
GO:0050892 intestinal absorption 2.99% (2/67) 6.73 0.000158 0.011343
GO:0010628 positive regulation of gene expression 11.94% (8/67) 2.34 0.000175 0.011466
GO:0051234 establishment of localization 28.36% (19/67) 1.29 0.000154 0.011466
GO:0051223 regulation of protein transport 7.46% (5/67) 3.26 0.000182 0.011601
GO:0003231 cardiac ventricle development 2.99% (2/67) 6.6 0.000189 0.011708
GO:0006099 tricarboxylic acid cycle 4.48% (3/67) 4.71 0.000213 0.012854
GO:0006811 ion transport 14.93% (10/67) 1.97 0.000219 0.012857
GO:0003205 cardiac chamber development 2.99% (2/67) 6.38 0.00026 0.013178
GO:0003857 3-hydroxyacyl-CoA dehydrogenase activity 2.99% (2/67) 6.38 0.00026 0.013178
GO:0031344 regulation of cell projection organization 7.46% (5/67) 3.17 0.000244 0.013278
GO:0008150 biological_process 82.09% (55/67) 0.42 0.000234 0.013359
GO:0016835 carbon-oxygen lyase activity 7.46% (5/67) 3.17 0.000241 0.013418
GO:0030258 lipid modification 5.97% (4/67) 3.71 0.000255 0.013532
GO:0009695 jasmonic acid biosynthetic process 4.48% (3/67) 4.58 0.000275 0.013621
GO:0009098 leucine biosynthetic process 2.99% (2/67) 6.28 0.0003 0.013923
GO:0004165 delta(3)-delta(2)-enoyl-CoA isomerase activity 2.99% (2/67) 6.28 0.0003 0.013923
GO:0004300 enoyl-CoA hydratase activity 2.99% (2/67) 6.28 0.0003 0.013923
GO:0070201 regulation of establishment of protein localization 7.46% (5/67) 3.08 0.000325 0.014809
GO:0009081 branched-chain amino acid metabolic process 4.48% (3/67) 4.45 0.00036 0.016056
GO:0060026 convergent extension 2.99% (2/67) 6.1 0.000387 0.016935
GO:0008235 metalloexopeptidase activity 2.99% (2/67) 6.02 0.000435 0.017647
GO:0051128 regulation of cellular component organization 17.91% (12/67) 1.63 0.000431 0.017789
GO:0098655 cation transmembrane transport 8.96% (6/67) 2.63 0.000424 0.017851
GO:0009056 catabolic process 22.39% (15/67) 1.4 0.00042 0.018035
GO:0008324 cation transmembrane transporter activity 10.45% (7/67) 2.33 0.00049 0.018863
GO:0005575 cellular_component 80.6% (54/67) 0.4 0.000487 0.019075
GO:0016863 intramolecular oxidoreductase activity, transposing C=C bonds 2.99% (2/67) 5.94 0.000486 0.019349
GO:0044281 small molecule metabolic process 23.88% (16/67) 1.29 0.000605 0.02289
GO:0006097 glyoxylate cycle 2.99% (2/67) 5.73 0.000654 0.023917
GO:0016829 lyase activity 10.45% (7/67) 2.26 0.000646 0.02403
GO:0072350 tricarboxylic acid metabolic process 2.99% (2/67) 5.66 0.000715 0.025335
GO:0030165 PDZ domain binding 2.99% (2/67) 5.66 0.000715 0.025335
GO:0070161 anchoring junction 20.9% (14/67) 1.37 0.000793 0.02723
GO:0110165 cellular anatomical entity 79.1% (53/67) 0.39 0.000793 0.027649
GO:0006810 transport 25.37% (17/67) 1.19 0.00082 0.027722
GO:0022600 digestive system process 2.99% (2/67) 5.54 0.000846 0.028185
GO:0051179 localization 28.36% (19/67) 1.09 0.000935 0.028586
GO:0000166 nucleotide binding 23.88% (16/67) 1.23 0.000897 0.028598
GO:1901265 nucleoside phosphate binding 23.88% (16/67) 1.23 0.000897 0.028598
GO:0036094 small molecule binding 25.37% (17/67) 1.18 0.000924 0.028628
GO:0015075 ion transmembrane transporter activity 11.94% (8/67) 1.99 0.000874 0.028659
GO:0042579 microbody 8.96% (6/67) 2.42 0.000915 0.028757
GO:0003229 ventricular cardiac muscle tissue development 1.49% (1/67) 9.19 0.001714 0.032408
GO:0003417 growth plate cartilage development 1.49% (1/67) 9.19 0.001714 0.032408
GO:0006925 inflammatory cell apoptotic process 1.49% (1/67) 9.19 0.001714 0.032408
GO:0030327 prenylated protein catabolic process 1.49% (1/67) 9.19 0.001714 0.032408
GO:0043979 histone H2B-K5 acetylation 1.49% (1/67) 9.19 0.001714 0.032408
GO:0044028 DNA hypomethylation 1.49% (1/67) 9.19 0.001714 0.032408
GO:0044029 hypomethylation of CpG island 1.49% (1/67) 9.19 0.001714 0.032408
GO:0060351 cartilage development involved in endochondral bone morphogenesis 1.49% (1/67) 9.19 0.001714 0.032408
GO:1903799 negative regulation of miRNA maturation 1.49% (1/67) 9.19 0.001714 0.032408
GO:1990164 obsolete histone H2A phosphorylation 1.49% (1/67) 9.19 0.001714 0.032408
GO:2000730 regulation of termination of RNA polymerase I transcription 1.49% (1/67) 9.19 0.001714 0.032408
GO:0008292 acetylcholine biosynthetic process 1.49% (1/67) 9.19 0.001714 0.032408
GO:0032475 otolith formation 1.49% (1/67) 9.19 0.001714 0.032408
GO:0061526 acetylcholine secretion 1.49% (1/67) 9.19 0.001714 0.032408
GO:1900620 acetate ester biosynthetic process 1.49% (1/67) 9.19 0.001714 0.032408
GO:0047868 dimethylmaleate hydratase activity 1.49% (1/67) 9.19 0.001714 0.032408
GO:0007472 wing disc morphogenesis 1.49% (1/67) 9.19 0.001714 0.032408
GO:0016335 morphogenesis of larval imaginal disc epithelium 1.49% (1/67) 9.19 0.001714 0.032408
GO:0033564 anterior/posterior axon guidance 1.49% (1/67) 9.19 0.001714 0.032408
GO:0042067 establishment of ommatidial planar polarity 1.49% (1/67) 9.19 0.001714 0.032408
GO:0043296 apical junction complex 1.49% (1/67) 9.19 0.001714 0.032408
GO:0048884 neuromast development 1.49% (1/67) 9.19 0.001714 0.032408
GO:0071679 commissural neuron axon guidance 1.49% (1/67) 9.19 0.001714 0.032408
GO:0097475 motor neuron migration 1.49% (1/67) 9.19 0.001714 0.032408
GO:2000047 regulation of cell-cell adhesion mediated by cadherin 1.49% (1/67) 9.19 0.001714 0.032408
GO:2000048 negative regulation of cell-cell adhesion mediated by cadherin 1.49% (1/67) 9.19 0.001714 0.032408
GO:0000814 ESCRT II complex 1.49% (1/67) 9.19 0.001714 0.032408
GO:0044524 protein sulfhydration 1.49% (1/67) 9.19 0.001714 0.032408
GO:0051246 regulation of protein metabolic process 16.42% (11/67) 1.57 0.001078 0.032496
GO:0009894 regulation of catabolic process 10.45% (7/67) 2.01 0.001761 0.032741
GO:0016289 CoA hydrolase activity 2.99% (2/67) 5.02 0.001756 0.032922
GO:0006749 glutathione metabolic process 4.48% (3/67) 3.64 0.001822 0.033591
GO:0098588 bounding membrane of organelle 19.4% (13/67) 1.31 0.001866 0.034132
GO:0007015 actin filament organization 4.48% (3/67) 3.61 0.001935 0.035102
GO:1903829 positive regulation of protein localization 5.97% (4/67) 3.12 0.001196 0.035118
GO:1901575 organic substance catabolic process 19.4% (13/67) 1.38 0.001182 0.035174
GO:2000677 regulation of transcription regulatory region DNA binding 2.99% (2/67) 4.94 0.001955 0.035178
GO:1902600 proton transmembrane transport 4.48% (3/67) 3.84 0.001228 0.035591
GO:0032787 monocarboxylic acid metabolic process 13.43% (9/67) 1.76 0.001282 0.035758
GO:0035556 intracellular signal transduction 11.94% (8/67) 1.91 0.001259 0.036013
GO:0065008 regulation of biological quality 25.37% (17/67) 1.14 0.001278 0.036078
GO:0034220 ion transmembrane transport 10.45% (7/67) 2.08 0.001337 0.036828
GO:0046982 protein heterodimerization activity 5.97% (4/67) 2.9 0.00208 0.037116
GO:0120035 regulation of plasma membrane bounded cell projection organization 5.97% (4/67) 2.89 0.002104 0.037249
GO:0046487 glyoxylate metabolic process 2.99% (2/67) 4.87 0.002165 0.037728
GO:0070403 NAD+ binding 2.99% (2/67) 4.87 0.002165 0.037728
GO:0044238 primary metabolic process 49.25% (33/67) 0.63 0.002253 0.038367
GO:0048522 positive regulation of cellular process 28.36% (19/67) 1.04 0.001429 0.038404
GO:0016042 lipid catabolic process 7.46% (5/67) 2.6 0.001413 0.038447
GO:0048468 cell development 8.96% (6/67) 2.16 0.002243 0.038501
GO:0005911 cell-cell junction 19.4% (13/67) 1.28 0.002281 0.038551
GO:0051247 positive regulation of protein metabolic process 10.45% (7/67) 1.95 0.002236 0.038665
GO:0022857 transmembrane transporter activity 13.43% (9/67) 1.64 0.002305 0.038672
GO:0043516 regulation of DNA damage response, signal transduction by p53 class mediator 2.99% (2/67) 5.14 0.001477 0.038757
GO:0006551 leucine metabolic process 2.99% (2/67) 5.14 0.001477 0.038757
GO:0051239 regulation of multicellular organismal process 19.4% (13/67) 1.27 0.002346 0.038768
GO:0045335 phagocytic vesicle 4.48% (3/67) 3.52 0.002345 0.03904
GO:0098662 inorganic cation transmembrane transport 7.46% (5/67) 2.58 0.001506 0.039063
GO:0001889 liver development 4.48% (3/67) 3.73 0.00154 0.03949
GO:0009082 branched-chain amino acid biosynthetic process 2.99% (2/67) 5.1 0.001567 0.039732
GO:0005777 peroxisome 7.46% (5/67) 2.41 0.002494 0.040914
GO:0055085 transmembrane transport 13.43% (9/67) 1.71 0.001658 0.041569
GO:0051287 NAD binding 4.48% (3/67) 3.68 0.001713 0.042454
GO:0032991 protein-containing complex 25.37% (17/67) 1.04 0.002687 0.043135
GO:0099081 supramolecular polymer 7.46% (5/67) 2.39 0.002675 0.04325
GO:0099512 supramolecular fiber 7.46% (5/67) 2.39 0.002675 0.04325
GO:0015220 choline transmembrane transporter activity 1.49% (1/67) 8.19 0.003425 0.043918
GO:0035675 neuromast hair cell development 1.49% (1/67) 8.19 0.003425 0.043918
GO:0004450 isocitrate dehydrogenase (NADP+) activity 1.49% (1/67) 8.19 0.003425 0.043918
GO:0060696 regulation of phospholipid catabolic process 1.49% (1/67) 8.19 0.003425 0.043918
GO:1903976 negative regulation of glial cell migration 1.49% (1/67) 8.19 0.003425 0.043918
GO:1904464 regulation of matrix metallopeptidase secretion 1.49% (1/67) 8.19 0.003425 0.043918
GO:1904465 negative regulation of matrix metallopeptidase secretion 1.49% (1/67) 8.19 0.003425 0.043918
GO:1901848 nicotinate catabolic process 1.49% (1/67) 8.19 0.003425 0.043918
GO:1904216 positive regulation of protein import into chloroplast stroma 1.49% (1/67) 8.19 0.003425 0.043918
GO:0098688 parallel fiber to Purkinje cell synapse 1.49% (1/67) 8.19 0.003425 0.043918
GO:1990032 parallel fiber 1.49% (1/67) 8.19 0.003425 0.043918
GO:0030859 polarized epithelial cell differentiation 1.49% (1/67) 8.19 0.003425 0.043918
GO:0035089 establishment of apical/basal cell polarity 1.49% (1/67) 8.19 0.003425 0.043918
GO:0043297 apical junction assembly 1.49% (1/67) 8.19 0.003425 0.043918
GO:0050313 sulfur dioxygenase activity 1.49% (1/67) 8.19 0.003425 0.043918
GO:1903918 regulation of actin filament severing 1.49% (1/67) 8.19 0.003425 0.043918
GO:1903920 positive regulation of actin filament severing 1.49% (1/67) 8.19 0.003425 0.043918
GO:0033791 3alpha,7alpha,12alpha-trihydroxy-5beta-cholestanoyl-CoA 24-hydroxylase activity 1.49% (1/67) 8.19 0.003425 0.043918
GO:0042810 pheromone metabolic process 1.49% (1/67) 8.19 0.003425 0.043918
GO:0042811 pheromone biosynthetic process 1.49% (1/67) 8.19 0.003425 0.043918
GO:0140493 very long-chain fatty acid beta-oxidation 1.49% (1/67) 8.19 0.003425 0.043918
GO:1904069 ascaroside metabolic process 1.49% (1/67) 8.19 0.003425 0.043918
GO:1904070 ascaroside biosynthetic process 1.49% (1/67) 8.19 0.003425 0.043918
GO:0004730 pseudouridylate synthase activity 1.49% (1/67) 8.19 0.003425 0.043918
GO:0048518 positive regulation of biological process 31.34% (21/67) 0.86 0.003482 0.044393
GO:0015399 primary active transmembrane transporter activity 5.97% (4/67) 2.69 0.003505 0.044424
GO:0044242 cellular lipid catabolic process 5.97% (4/67) 2.78 0.002802 0.044647
GO:0008152 metabolic process 56.72% (38/67) 0.51 0.003607 0.045215
GO:1904951 positive regulation of establishment of protein localization 4.48% (3/67) 3.3 0.003592 0.045273
GO:0043168 anion binding 19.4% (13/67) 1.2 0.00367 0.045741
GO:0030054 cell junction 20.9% (14/67) 1.17 0.002968 0.04631
GO:0015748 organophosphate ester transport 4.48% (3/67) 3.4 0.002952 0.046386
GO:0051222 positive regulation of protein transport 4.48% (3/67) 3.4 0.002952 0.046386
GO:0003723 RNA binding 16.42% (11/67) 1.34 0.003751 0.046497
GO:0005782 peroxisomal matrix 2.99% (2/67) 4.6 0.003103 0.04774
GO:0031907 microbody lumen 2.99% (2/67) 4.6 0.003103 0.04774
GO:0033157 regulation of intracellular protein transport 4.48% (3/67) 3.36 0.003157 0.047913
GO:2000112 regulation of cellular macromolecule biosynthetic process 8.96% (6/67) 2.06 0.003138 0.047948
GO:0031090 organelle membrane 25.37% (17/67) 0.98 0.003994 0.049229
GO:0022804 active transmembrane transporter activity 8.96% (6/67) 1.99 0.004049 0.049366
GO:0006875 cellular metal ion homeostasis 5.97% (4/67) 2.63 0.004047 0.049612
GO:0005215 transporter activity 13.43% (9/67) 1.56 0.003297 0.049693
GO:0005654 nucleoplasm 13.43% (9/67) 1.56 0.003321 0.049727
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_263 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_69 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_96 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_103 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_136 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_185 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_209 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_224 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_241 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_244 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_251 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_252 0.009 Orthogroups with 8 Potato genotypes Compare
Sequences (67) (download table)

InterPro Domains

GO Terms

Family Terms