SOLTUB.AGRIA.G00000033060


Description : Tryptophan synthase


Gene families : OG_02_0006796 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000033060
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_6


Type GO Term Name Evidence Source
BP GO:0000162 tryptophan biosynthetic process IEA AHRD
MF GO:0004834 tryptophan synthase activity IEA AHRD
MF GO:0005515 protein binding IEA AHRD
CC GO:0005886 plasma membrane IEA AHRD
BP GO:0006979 response to oxidative stress IEA AHRD
CC GO:0009570 chloroplast stroma IEA AHRD
CC GO:0009941 chloroplast envelope IEA AHRD
Type GO Term Name Evidence Source
CC GO:0000322 storage vacuole IEP Predict GO terms from Neighborhoods
CC GO:0000323 lytic vacuole IEP Predict GO terms from Neighborhoods
CC GO:0000324 fungal-type vacuole IEP Predict GO terms from Neighborhoods
BP GO:0002218 activation of innate immune response IEP Predict GO terms from Neighborhoods
BP GO:0002229 defense response to oomycetes IEP Predict GO terms from Neighborhoods
BP GO:0002238 response to molecule of fungal origin IEP Predict GO terms from Neighborhoods
BP GO:0002757 immune response-activating signal transduction IEP Predict GO terms from Neighborhoods
BP GO:0002758 innate immune response-activating signal transduction IEP Predict GO terms from Neighborhoods
MF GO:0003987 acetate-CoA ligase activity IEP Predict GO terms from Neighborhoods
MF GO:0003988 acetyl-CoA C-acyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0003997 acyl-CoA oxidase activity IEP Predict GO terms from Neighborhoods
MF GO:0005342 organic acid transmembrane transporter activity IEP Predict GO terms from Neighborhoods
CC GO:0005777 peroxisome IEP Predict GO terms from Neighborhoods
CC GO:0005782 peroxisomal matrix IEP Predict GO terms from Neighborhoods
BP GO:0006083 acetate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006629 lipid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006631 fatty acid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006635 fatty acid beta-oxidation IEP Predict GO terms from Neighborhoods
BP GO:0006637 acyl-CoA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006690 icosanoid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006790 sulfur compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006820 anion transport IEP Predict GO terms from Neighborhoods
BP GO:0006865 amino acid transport IEP Predict GO terms from Neighborhoods
BP GO:0006940 regulation of smooth muscle contraction IEP Predict GO terms from Neighborhoods
BP GO:0007031 peroxisome organization IEP Predict GO terms from Neighborhoods
BP GO:0007623 circadian rhythm IEP Predict GO terms from Neighborhoods
BP GO:0008202 steroid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0008206 bile acid metabolic process IEP Predict GO terms from Neighborhoods
MF GO:0008410 CoA-transferase activity IEP Predict GO terms from Neighborhoods
MF GO:0008509 anion transmembrane transporter activity IEP Predict GO terms from Neighborhoods
MF GO:0008514 organic anion transmembrane transporter activity IEP Predict GO terms from Neighborhoods
MF GO:0008775 acetate CoA-transferase activity IEP Predict GO terms from Neighborhoods
BP GO:0009062 fatty acid catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009403 toxin biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009404 toxin metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009611 response to wounding IEP Predict GO terms from Neighborhoods
BP GO:0009698 phenylpropanoid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009699 phenylpropanoid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009719 response to endogenous stimulus IEP Predict GO terms from Neighborhoods
BP GO:0009723 response to ethylene IEP Predict GO terms from Neighborhoods
BP GO:0009725 response to hormone IEP Predict GO terms from Neighborhoods
BP GO:0009800 cinnamic acid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009803 cinnamic acid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009812 flavonoid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009813 flavonoid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009820 alkaloid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009821 alkaloid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009836 fruit ripening, climacteric IEP Predict GO terms from Neighborhoods
BP GO:0010033 response to organic substance IEP Predict GO terms from Neighborhoods
BP GO:0010111 glyoxysome organization IEP Predict GO terms from Neighborhoods
BP GO:0010124 phenylacetate catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0010150 leaf senescence IEP Predict GO terms from Neighborhoods
BP GO:0010222 stem vascular tissue pattern formation IEP Predict GO terms from Neighborhoods
MF GO:0010327 acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase activity IEP Predict GO terms from Neighborhoods
BP GO:0010559 regulation of glycoprotein biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0010561 negative regulation of glycoprotein biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0010581 regulation of starch biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0010597 green leaf volatile biosynthetic process IEP Predict GO terms from Neighborhoods
MF GO:0015171 amino acid transmembrane transporter activity IEP Predict GO terms from Neighborhoods
MF GO:0015175 neutral amino acid transmembrane transporter activity IEP Predict GO terms from Neighborhoods
MF GO:0015179 L-amino acid transmembrane transporter activity IEP Predict GO terms from Neighborhoods
MF GO:0015245 fatty acid transmembrane transporter activity IEP Predict GO terms from Neighborhoods
MF GO:0015645 fatty acid ligase activity IEP Predict GO terms from Neighborhoods
BP GO:0015711 organic anion transport IEP Predict GO terms from Neighborhoods
BP GO:0015801 aromatic amino acid transport IEP Predict GO terms from Neighborhoods
BP GO:0015804 neutral amino acid transport IEP Predict GO terms from Neighborhoods
BP GO:0015849 organic acid transport IEP Predict GO terms from Neighborhoods
BP GO:0016042 lipid catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0016144 S-glycoside biosynthetic process IEP Predict GO terms from Neighborhoods
MF GO:0016207 4-coumarate-CoA ligase activity IEP Predict GO terms from Neighborhoods
MF GO:0016289 CoA hydrolase activity IEP Predict GO terms from Neighborhoods
MF GO:0016290 palmitoyl-CoA hydrolase activity IEP Predict GO terms from Neighborhoods
MF GO:0016401 palmitoyl-CoA oxidase activity IEP Predict GO terms from Neighborhoods
MF GO:0016405 CoA-ligase activity IEP Predict GO terms from Neighborhoods
MF GO:0016408 C-acyltransferase activity IEP Predict GO terms from Neighborhoods
BP GO:0016559 peroxisome fission IEP Predict GO terms from Neighborhoods
MF GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor IEP Predict GO terms from Neighborhoods
MF GO:0016706 2-oxoglutarate-dependent dioxygenase activity IEP Predict GO terms from Neighborhoods
MF GO:0016874 ligase activity IEP Predict GO terms from Neighborhoods
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Predict GO terms from Neighborhoods
MF GO:0016878 acid-thiol ligase activity IEP Predict GO terms from Neighborhoods
BP GO:0017015 regulation of transforming growth factor beta receptor signaling pathway IEP Predict GO terms from Neighborhoods
CC GO:0017119 Golgi transport complex IEP Predict GO terms from Neighborhoods
MF GO:0018858 benzoate-CoA ligase activity IEP Predict GO terms from Neighborhoods
BP GO:0018958 phenol-containing compound metabolic process IEP Predict GO terms from Neighborhoods
MF GO:0019107 myristoyltransferase activity IEP Predict GO terms from Neighborhoods
BP GO:0019372 lipoxygenase pathway IEP Predict GO terms from Neighborhoods
BP GO:0019395 fatty acid oxidation IEP Predict GO terms from Neighborhoods
BP GO:0019605 butyrate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0019748 secondary metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0019758 glycosinolate biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0019761 glucosinolate biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0030258 lipid modification IEP Predict GO terms from Neighborhoods
BP GO:0030511 positive regulation of transforming growth factor beta receptor signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0030579 ubiquitin-dependent SMAD protein catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0031347 regulation of defense response IEP Predict GO terms from Neighborhoods
CC GO:0031907 microbody lumen IEP Predict GO terms from Neighborhoods
MF GO:0031956 medium-chain fatty acid-CoA ligase activity IEP Predict GO terms from Neighborhoods
CC GO:0031974 membrane-enclosed lumen IEP Predict GO terms from Neighborhoods
MF GO:0032183 SUMO binding IEP Predict GO terms from Neighborhoods
MF GO:0032184 SUMO polymer binding IEP Predict GO terms from Neighborhoods
BP GO:0032787 monocarboxylic acid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0033540 fatty acid beta-oxidation using acyl-CoA oxidase IEP Predict GO terms from Neighborhoods
MF GO:0033759 flavone synthase activity IEP Predict GO terms from Neighborhoods
BP GO:0033865 nucleoside bisphosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP Predict GO terms from Neighborhoods
MF GO:0033882 choloyl-CoA hydrolase activity IEP Predict GO terms from Neighborhoods
MF GO:0034002 (R)-limonene synthase activity IEP Predict GO terms from Neighborhoods
MF GO:0034008 R-linalool synthase activity IEP Predict GO terms from Neighborhoods
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0034440 lipid oxidation IEP Predict GO terms from Neighborhoods
MF GO:0034768 (E)-beta-ocimene synthase activity IEP Predict GO terms from Neighborhoods
MF GO:0034785 salicylate 5-hydroxylase activity IEP Predict GO terms from Neighborhoods
BP GO:0035383 thioester metabolic process IEP Predict GO terms from Neighborhoods
CC GO:0035580 specific granule lumen IEP Predict GO terms from Neighborhoods
BP GO:0036109 alpha-linolenic acid metabolic process IEP Predict GO terms from Neighborhoods
CC GO:0036477 somatodendritic compartment IEP Predict GO terms from Neighborhoods
BP GO:0040019 positive regulation of embryonic development IEP Predict GO terms from Neighborhoods
BP GO:0042178 xenobiotic catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0042440 pigment metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0042537 benzene-containing compound metabolic process IEP Predict GO terms from Neighborhoods
CC GO:0042579 microbody IEP Predict GO terms from Neighborhoods
CC GO:0043233 organelle lumen IEP Predict GO terms from Neighborhoods
BP GO:0043649 dicarboxylic acid catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0043692 monoterpene metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0043693 monoterpene biosynthetic process IEP Predict GO terms from Neighborhoods
MF GO:0043759 methylbutanoate-CoA ligase activity IEP Predict GO terms from Neighborhoods
BP GO:0044242 cellular lipid catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0044255 cellular lipid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0044550 secondary metabolite biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0045223 regulation of CD4 production IEP Predict GO terms from Neighborhoods
BP GO:0045225 negative regulation of CD4 production IEP Predict GO terms from Neighborhoods
BP GO:0045339 farnesyl diphosphate catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0045932 negative regulation of muscle contraction IEP Predict GO terms from Neighborhoods
BP GO:0045986 negative regulation of smooth muscle contraction IEP Predict GO terms from Neighborhoods
BP GO:0046148 pigment biosynthetic process IEP Predict GO terms from Neighborhoods
MF GO:0046332 SMAD binding IEP Predict GO terms from Neighborhoods
BP GO:0046395 carboxylic acid catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046459 short-chain fatty acid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046942 carboxylic acid transport IEP Predict GO terms from Neighborhoods
MF GO:0046943 carboxylic acid transmembrane transporter activity IEP Predict GO terms from Neighborhoods
MF GO:0047203 13-hydroxylupinine O-tigloyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0047617 acyl-CoA hydrolase activity IEP Predict GO terms from Neighborhoods
MF GO:0047760 butyrate-CoA ligase activity IEP Predict GO terms from Neighborhoods
MF GO:0047893 flavonol 3-O-glucosyltransferase activity IEP Predict GO terms from Neighborhoods
BP GO:0048511 rhythmic process IEP Predict GO terms from Neighborhoods
BP GO:0048699 generation of neurons IEP Predict GO terms from Neighborhoods
MF GO:0050218 propionate-CoA ligase activity IEP Predict GO terms from Neighborhoods
MF GO:0050275 scopoletin glucosyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0050498 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, with 2-oxoglutarate as one donor, and the other dehydrogenated IEP Predict GO terms from Neighborhoods
MF GO:0050550 pinene synthase activity IEP Predict GO terms from Neighborhoods
MF GO:0050551 myrcene synthase activity IEP Predict GO terms from Neighborhoods
MF GO:0050552 (4S)-limonene synthase activity IEP Predict GO terms from Neighborhoods
MF GO:0050633 acetyl-CoA C-myristoyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0051213 dioxygenase activity IEP Predict GO terms from Neighborhoods
BP GO:0051552 flavone metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0051553 flavone biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0051554 flavonol metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0051555 flavonol biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0052314 phytoalexin metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0052315 phytoalexin biosynthetic process IEP Predict GO terms from Neighborhoods
MF GO:0052815 medium-chain acyl-CoA hydrolase activity IEP Predict GO terms from Neighborhoods
BP GO:0060771 phyllotactic patterning IEP Predict GO terms from Neighborhoods
BP GO:0060772 leaf phyllotactic patterning IEP Predict GO terms from Neighborhoods
BP GO:0060774 auxin mediated signaling pathway involved in phyllotactic patterning IEP Predict GO terms from Neighborhoods
CC GO:0070013 intracellular organelle lumen IEP Predict GO terms from Neighborhoods
BP GO:0070911 global genome nucleotide-excision repair IEP Predict GO terms from Neighborhoods
BP GO:0071215 cellular response to abscisic acid stimulus IEP Predict GO terms from Neighborhoods
BP GO:0072329 monocarboxylic acid catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0072330 monocarboxylic acid biosynthetic process IEP Predict GO terms from Neighborhoods
MF GO:0080015 sabinene synthase activity IEP Predict GO terms from Neighborhoods
BP GO:0080051 cutin transport IEP Predict GO terms from Neighborhoods
BP GO:0080172 petal epidermis patterning IEP Predict GO terms from Neighborhoods
BP GO:0090100 positive regulation of transmembrane receptor protein serine/threonine kinase signaling pathway IEP Predict GO terms from Neighborhoods
MF GO:0090482 vitamin transmembrane transporter activity IEP Predict GO terms from Neighborhoods
BP GO:0090693 plant organ senescence IEP Predict GO terms from Neighborhoods
BP GO:0097237 cellular response to toxic substance IEP Predict GO terms from Neighborhoods
BP GO:0097306 cellular response to alcohol IEP Predict GO terms from Neighborhoods
BP GO:0097548 seed abscission IEP Predict GO terms from Neighborhoods
CC GO:0098852 lytic vacuole membrane IEP Predict GO terms from Neighborhoods
MF GO:0102802 thebaine 6-O-demethylase activity IEP Predict GO terms from Neighborhoods
MF GO:0102805 codeine O-demethylase activity IEP Predict GO terms from Neighborhoods
MF GO:0106286 (E)-caffeate-CoA ligase activity IEP Predict GO terms from Neighborhoods
MF GO:0106290 trans-cinnamate-CoA ligase activity IEP Predict GO terms from Neighborhoods
MF GO:0120091 jasmonic acid hydrolase IEP Predict GO terms from Neighborhoods
BP GO:0120254 olefinic compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0120255 olefinic compound biosynthetic process IEP Predict GO terms from Neighborhoods
MF GO:0140657 ATP-dependent activity IEP Predict GO terms from Neighborhoods
BP GO:0150104 transport across blood-brain barrier IEP Predict GO terms from Neighborhoods
BP GO:1900150 regulation of defense response to fungus IEP Predict GO terms from Neighborhoods
BP GO:1901135 carbohydrate derivative metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1901137 carbohydrate derivative biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:1901615 organic hydroxy compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1901617 organic hydroxy compound biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:1901657 glycosyl compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1901659 glycosyl compound biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:1901787 benzoyl-CoA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1901941 (+)-epi-alpha-bisabolol metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1901943 (+)-epi-alpha-bisabolol biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:1903018 regulation of glycoprotein metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1903019 negative regulation of glycoprotein metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1903844 regulation of cellular response to transforming growth factor beta stimulus IEP Predict GO terms from Neighborhoods
BP GO:1903846 positive regulation of cellular response to transforming growth factor beta stimulus IEP Predict GO terms from Neighborhoods
BP GO:2000014 regulation of endosperm development IEP Predict GO terms from Neighborhoods
BP GO:2000022 regulation of jasmonic acid mediated signaling pathway IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR036052 Trypto_synt_PLP_dependent 65 427
IPR001926 PLP-dep 111 424
IPR006654 Trp_synth_beta 66 428
No external refs found!