SOLTUB.AGRIA.G00000033084


Description : Arginine/serine-rich family protein


Gene families : OG_02_0010720 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000033084
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_255


Type GO Term Name Evidence Source
BP GO:0000381 regulation of alternative mRNA splicing, via spliceosome IEA AHRD
CC GO:0000791 euchromatin IEA AHRD
MF GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA AHRD
MF GO:0003727 single-stranded RNA binding IEA AHRD
MF GO:0003729 mRNA binding IEA AHRD
CC GO:0005730 nucleolus IEA AHRD
CC GO:0005829 cytosol IEA AHRD
BP GO:0006366 transcription by RNA polymerase II IEA AHRD
BP GO:0006376 mRNA splice site selection IEA AHRD
BP GO:0006412 translation IEA AHRD
BP GO:0006509 membrane protein ectodomain proteolysis IEA AHRD
BP GO:0010182 sugar mediated signaling pathway IEA AHRD
CC GO:0016607 nuclear speck IEA AHRD
MF GO:0019904 protein domain specific binding IEA AHRD
MF GO:0042802 identical protein binding IEA AHRD
BP GO:0043065 positive regulation of apoptotic process IEA AHRD
CC GO:0044530 supraspliceosomal complex IEA AHRD
BP GO:0045893 positive regulation of DNA-templated transcription IEA AHRD
BP GO:0048025 negative regulation of mRNA splicing, via spliceosome IEA AHRD
CC GO:0061574 ASAP complex IEA AHRD
CC GO:0070062 extracellular exosome IEA AHRD
CC GO:0071013 catalytic step 2 spliceosome IEA AHRD
BP GO:0071347 cellular response to interleukin-1 IEA AHRD
Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Predict GO terms from Neighborhoods
CC GO:0000109 nucleotide-excision repair complex IEP Predict GO terms from Neighborhoods
BP GO:0000245 spliceosomal complex assembly IEP Predict GO terms from Neighborhoods
BP GO:0000387 spliceosomal snRNP assembly IEP Predict GO terms from Neighborhoods
BP GO:0000389 mRNA 3'-splice site recognition IEP Predict GO terms from Neighborhoods
CC GO:0000408 EKC/KEOPS complex IEP Predict GO terms from Neighborhoods
BP GO:0000715 nucleotide-excision repair, DNA damage recognition IEP Predict GO terms from Neighborhoods
BP GO:0001514 selenocysteine incorporation IEP Predict GO terms from Neighborhoods
BP GO:0002949 tRNA threonylcarbamoyladenosine modification IEP Predict GO terms from Neighborhoods
MF GO:0003684 damaged DNA binding IEP Predict GO terms from Neighborhoods
MF GO:0003697 single-stranded DNA binding IEP Predict GO terms from Neighborhoods
MF GO:0003730 mRNA 3'-UTR binding IEP Predict GO terms from Neighborhoods
MF GO:0003746 translation elongation factor activity IEP Predict GO terms from Neighborhoods
MF GO:0003924 GTPase activity IEP Predict GO terms from Neighborhoods
CC GO:0005682 U5 snRNP IEP Predict GO terms from Neighborhoods
CC GO:0005683 U7 snRNP IEP Predict GO terms from Neighborhoods
CC GO:0005684 U2-type spliceosomal complex IEP Predict GO terms from Neighborhoods
CC GO:0005685 U1 snRNP IEP Predict GO terms from Neighborhoods
CC GO:0005686 U2 snRNP IEP Predict GO terms from Neighborhoods
CC GO:0005687 U4 snRNP IEP Predict GO terms from Neighborhoods
CC GO:0005689 U12-type spliceosomal complex IEP Predict GO terms from Neighborhoods
CC GO:0005697 telomerase holoenzyme complex IEP Predict GO terms from Neighborhoods
BP GO:0006396 RNA processing IEP Predict GO terms from Neighborhoods
BP GO:0006400 tRNA modification IEP Predict GO terms from Neighborhoods
BP GO:0006414 translational elongation IEP Predict GO terms from Neighborhoods
BP GO:0006417 regulation of translation IEP Predict GO terms from Neighborhoods
BP GO:0006446 regulation of translational initiation IEP Predict GO terms from Neighborhoods
BP GO:0006451 translational readthrough IEP Predict GO terms from Neighborhoods
BP GO:0006479 protein methylation IEP Predict GO terms from Neighborhoods
BP GO:0007276 gamete generation IEP Predict GO terms from Neighborhoods
BP GO:0007281 germ cell development IEP Predict GO terms from Neighborhoods
BP GO:0007283 spermatogenesis IEP Predict GO terms from Neighborhoods
BP GO:0007420 brain development IEP Predict GO terms from Neighborhoods
MF GO:0008135 translation factor activity, RNA binding IEP Predict GO terms from Neighborhoods
MF GO:0008143 poly(A) binding IEP Predict GO terms from Neighborhoods
BP GO:0008213 protein alkylation IEP Predict GO terms from Neighborhoods
BP GO:0008406 gonad development IEP Predict GO terms from Neighborhoods
BP GO:0010193 response to ozone IEP Predict GO terms from Neighborhoods
CC GO:0010494 cytoplasmic stress granule IEP Predict GO terms from Neighborhoods
BP GO:0010608 post-transcriptional regulation of gene expression IEP Predict GO terms from Neighborhoods
BP GO:0010975 regulation of neuron projection development IEP Predict GO terms from Neighborhoods
BP GO:0010976 positive regulation of neuron projection development IEP Predict GO terms from Neighborhoods
CC GO:0015030 Cajal body IEP Predict GO terms from Neighborhoods
CC GO:0015935 small ribosomal subunit IEP Predict GO terms from Neighborhoods
BP GO:0019722 calcium-mediated signaling IEP Predict GO terms from Neighborhoods
BP GO:0019932 second-messenger-mediated signaling IEP Predict GO terms from Neighborhoods
CC GO:0022627 cytosolic small ribosomal subunit IEP Predict GO terms from Neighborhoods
CC GO:0030139 endocytic vesicle IEP Predict GO terms from Neighborhoods
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Predict GO terms from Neighborhoods
BP GO:0031346 positive regulation of cell projection organization IEP Predict GO terms from Neighborhoods
MF GO:0031593 polyubiquitin modification-dependent protein binding IEP Predict GO terms from Neighborhoods
MF GO:0032182 ubiquitin-like protein binding IEP Predict GO terms from Neighborhoods
BP GO:0032434 regulation of proteasomal ubiquitin-dependent protein catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0034063 stress granule assembly IEP Predict GO terms from Neighborhoods
BP GO:0034248 regulation of cellular amide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0034250 positive regulation of cellular amide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0034605 cellular response to heat IEP Predict GO terms from Neighborhoods
CC GO:0034708 methyltransferase complex IEP Predict GO terms from Neighborhoods
CC GO:0034709 methylosome IEP Predict GO terms from Neighborhoods
CC GO:0034719 SMN-Sm protein complex IEP Predict GO terms from Neighborhoods
MF GO:0043021 ribonucleoprotein complex binding IEP Predict GO terms from Neighborhoods
MF GO:0043130 ubiquitin binding IEP Predict GO terms from Neighborhoods
MF GO:0044877 protein-containing complex binding IEP Predict GO terms from Neighborhoods
MF GO:0045182 translation regulator activity IEP Predict GO terms from Neighborhoods
CC GO:0045495 pole plasm IEP Predict GO terms from Neighborhoods
BP GO:0045727 positive regulation of translation IEP Predict GO terms from Neighborhoods
BP GO:0045948 positive regulation of translational initiation IEP Predict GO terms from Neighborhoods
CC GO:0046540 U4/U6 x U5 tri-snRNP complex IEP Predict GO terms from Neighborhoods
BP GO:0048232 male gamete generation IEP Predict GO terms from Neighborhoods
BP GO:0048513 animal organ development IEP Predict GO terms from Neighborhoods
BP GO:0048568 embryonic organ development IEP Predict GO terms from Neighborhoods
BP GO:0048609 multicellular organismal reproductive process IEP Predict GO terms from Neighborhoods
BP GO:0050657 nucleic acid transport IEP Predict GO terms from Neighborhoods
BP GO:0050658 RNA transport IEP Predict GO terms from Neighborhoods
BP GO:0051028 mRNA transport IEP Predict GO terms from Neighborhoods
BP GO:0051236 establishment of RNA localization IEP Predict GO terms from Neighborhoods
BP GO:0051246 regulation of protein metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0061136 regulation of proteasomal protein catabolic process IEP Predict GO terms from Neighborhoods
MF GO:0061711 N(6)-L-threonylcarbamoyladenine synthase activity IEP Predict GO terms from Neighborhoods
MF GO:0070034 telomerase RNA binding IEP Predict GO terms from Neighborhoods
BP GO:0070525 tRNA threonylcarbamoyladenosine metabolic process IEP Predict GO terms from Neighborhoods
MF GO:0070628 proteasome binding IEP Predict GO terms from Neighborhoods
MF GO:0070717 poly-purine tract binding IEP Predict GO terms from Neighborhoods
MF GO:0070990 snRNP binding IEP Predict GO terms from Neighborhoods
CC GO:0071004 U2-type prespliceosome IEP Predict GO terms from Neighborhoods
CC GO:0071005 U2-type precatalytic spliceosome IEP Predict GO terms from Neighborhoods
CC GO:0071007 U2-type catalytic step 2 spliceosome IEP Predict GO terms from Neighborhoods
CC GO:0071010 prespliceosome IEP Predict GO terms from Neighborhoods
CC GO:0071011 precatalytic spliceosome IEP Predict GO terms from Neighborhoods
CC GO:0071204 histone pre-mRNA 3'end processing complex IEP Predict GO terms from Neighborhoods
MF GO:0071208 histone pre-mRNA DCP binding IEP Predict GO terms from Neighborhoods
CC GO:0071942 XPC complex IEP Predict GO terms from Neighborhoods
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Predict GO terms from Neighborhoods
CC GO:0097525 spliceosomal snRNP complex IEP Predict GO terms from Neighborhoods
CC GO:0097526 spliceosomal tri-snRNP complex IEP Predict GO terms from Neighborhoods
BP GO:0098760 response to interleukin-7 IEP Predict GO terms from Neighborhoods
BP GO:0098761 cellular response to interleukin-7 IEP Predict GO terms from Neighborhoods
CC GO:0120114 Sm-like protein family complex IEP Predict GO terms from Neighborhoods
MF GO:0140030 modification-dependent protein binding IEP Predict GO terms from Neighborhoods
BP GO:1903241 U2-type prespliceosome assembly IEP Predict GO terms from Neighborhoods
MF GO:1990446 U1 snRNP binding IEP Predict GO terms from Neighborhoods
MF GO:1990447 U2 snRNP binding IEP Predict GO terms from Neighborhoods
BP GO:2000058 regulation of ubiquitin-dependent protein catabolic process IEP Predict GO terms from Neighborhoods
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR035979 RBD_domain_sf 41 179
IPR000504 RRM_dom 108 176
No external refs found!