SOLTUB.AGRIA.G00000033166

Description : Tryptophan synthase beta chain

Gene families : OG_02_0002624 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000033166
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_214

Type	GO Term	Name	Evidence	Source
BP	GO:0000162	tryptophan biosynthetic process	IEA	AHRD
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004834	tryptophan synthase activity	IEA	AHRD
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005886	plasma membrane	IEA	AHRD
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006520	cellular amino acid metabolic process	None	Extended
BP	GO:0006568	tryptophan metabolic process	None	Extended
BP	GO:0006576	cellular biogenic amine metabolic process	None	Extended
BP	GO:0006586	indolalkylamine metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006979	response to oxidative stress	IEA	AHRD
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008652	cellular amino acid biosynthetic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009072	aromatic amino acid family metabolic process	None	Extended
BP	GO:0009073	aromatic amino acid family biosynthetic process	None	Extended
BP	GO:0009308	amine metabolic process	None	Extended
BP	GO:0009309	amine biosynthetic process	None	Extended
CC	GO:0009526	plastid envelope	None	Extended
CC	GO:0009532	plastid stroma	None	Extended
CC	GO:0009570	chloroplast stroma	IEA	AHRD
CC	GO:0009941	chloroplast envelope	IEA	AHRD
BP	GO:0009987	cellular process	None	Extended
CC	GO:0016020	membrane	None	Extended
BP	GO:0016053	organic acid biosynthetic process	None	Extended
MF	GO:0016829	lyase activity	None	Extended
MF	GO:0016835	carbon-oxygen lyase activity	None	Extended
MF	GO:0016836	hydro-lyase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
CC	GO:0031967	organelle envelope	None	Extended
CC	GO:0031975	envelope	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0042401	cellular biogenic amine biosynthetic process	None	Extended
BP	GO:0042430	indole-containing compound metabolic process	None	Extended
BP	GO:0042435	indole-containing compound biosynthetic process	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044106	cellular amine metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044283	small molecule biosynthetic process	None	Extended
BP	GO:0046219	indolalkylamine biosynthetic process	None	Extended
BP	GO:0046394	carboxylic acid biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1901605	alpha-amino acid metabolic process	None	Extended
BP	GO:1901607	alpha-amino acid biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0000287	magnesium ion binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0000719	photoreactive repair	IEP	Predict GO terms from Neighborhoods
CC	GO:0002189	ribose phosphate diphosphokinase complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0003684	damaged DNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0003904	deoxyribodipyrimidine photo-lyase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0003913	DNA photolyase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004312	fatty acid synthase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004316	3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004749	ribose phosphate diphosphokinase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005216	ion channel activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005244	voltage-gated ion channel activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005261	cation channel activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0005996	monosaccharide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006012	galactose metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006015	5-phosphoribose 1-diphosphate biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006164	purine nucleotide biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006290	pyrimidine dimer repair	IEP	Predict GO terms from Neighborhoods
BP	GO:0006633	fatty acid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006694	steroid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006699	bile acid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0008202	steroid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0008206	bile acid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009116	nucleoside metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009123	nucleoside monophosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009124	nucleoside monophosphate biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009156	ribonucleoside monophosphate biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009161	ribonucleoside monophosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009165	nucleotide biosynthetic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0009507	chloroplast	IEP	Predict GO terms from Neighborhoods
CC	GO:0009528	plastid inner membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0009536	plastid	IEP	Predict GO terms from Neighborhoods
CC	GO:0009706	chloroplast inner membrane	IEP	Predict GO terms from Neighborhoods
MF	GO:0009881	photoreceptor activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015267	channel activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015288	porin activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0016021	integral component of membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0016098	monoterpenoid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0016099	monoterpenoid biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0016229	steroid dehydrogenase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	IEP	Predict GO terms from Neighborhoods
MF	GO:0016627	oxidoreductase activity, acting on the CH-CH group of donors	IEP	Predict GO terms from Neighborhoods
MF	GO:0016628	oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	IEP	Predict GO terms from Neighborhoods
MF	GO:0016651	oxidoreductase activity, acting on NAD(P)H	IEP	Predict GO terms from Neighborhoods
MF	GO:0016778	diphosphotransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016830	carbon-carbon lyase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0018298	obsolete protein-chromophore linkage	IEP	Predict GO terms from Neighborhoods
BP	GO:0019318	hexose metabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0019866	organelle inner membrane	IEP	Predict GO terms from Neighborhoods
MF	GO:0022803	passive transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0022829	wide pore channel activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0022832	voltage-gated channel activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0022836	gated channel activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0022843	voltage-gated cation channel activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0030497	fatty acid elongation	IEP	Predict GO terms from Neighborhoods
CC	GO:0031300	intrinsic component of organelle membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0031301	integral component of organelle membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0031350	intrinsic component of plastid membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0031351	integral component of plastid membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0031354	intrinsic component of plastid outer membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0031355	integral component of plastid outer membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0031358	intrinsic component of chloroplast outer membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0031359	integral component of chloroplast outer membrane	IEP	Predict GO terms from Neighborhoods
MF	GO:0031406	carboxylic acid binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0031524	menthol metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0031525	menthol biosynthetic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0031969	chloroplast membrane	IEP	Predict GO terms from Neighborhoods
MF	GO:0032052	bile acid binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0033293	monocarboxylic acid binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0033764	steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	IEP	Predict GO terms from Neighborhoods
CC	GO:0034426	etioplast membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0034765	regulation of ion transmembrane transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0035671	enone reductase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0036094	small molecule binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0042170	plastid membrane	IEP	Predict GO terms from Neighborhoods
MF	GO:0043167	ion binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0043168	anion binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0043226	organelle	IEP	Predict GO terms from Neighborhoods
CC	GO:0043227	membrane-bounded organelle	IEP	Predict GO terms from Neighborhoods
CC	GO:0043229	intracellular organelle	IEP	Predict GO terms from Neighborhoods
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Predict GO terms from Neighborhoods
BP	GO:0046165	alcohol biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046390	ribose phosphate biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046391	5-phosphoribose 1-diphosphate metabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0046930	pore complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0047501	(+)-neomenthol dehydrogenase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0050660	flavin adenine dinucleotide binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0050661	NADP binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0050664	oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor	IEP	Predict GO terms from Neighborhoods
BP	GO:0051259	protein complex oligomerization	IEP	Predict GO terms from Neighborhoods
BP	GO:0051260	protein homooligomerization	IEP	Predict GO terms from Neighborhoods
BP	GO:0051262	protein tetramerization	IEP	Predict GO terms from Neighborhoods
MF	GO:0051287	NAD binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0051289	protein homotetramerization	IEP	Predict GO terms from Neighborhoods
MF	GO:0052581	(-)-isopiperitenone reductase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0061695	transferase complex, transferring phosphorus-containing groups	IEP	Predict GO terms from Neighborhoods
MF	GO:0070402	NADPH binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0070403	NAD+ binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0071396	cellular response to lipid	IEP	Predict GO terms from Neighborhoods
MF	GO:0071949	FAD binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0072522	purine-containing compound biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0097306	cellular response to alcohol	IEP	Predict GO terms from Neighborhoods
BP	GO:0097307	response to farnesol	IEP	Predict GO terms from Neighborhoods
BP	GO:0097308	cellular response to farnesol	IEP	Predict GO terms from Neighborhoods
BP	GO:0098754	detoxification	IEP	Predict GO terms from Neighborhoods
MF	GO:0102069	zerumbone synthase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0102131	obsolete 3-oxo-glutaryl-[acp] methyl ester reductase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0102132	obsolete 3-oxo-pimeloyl-[acp] methyl ester reductase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0102306	benzil reductase [(S)-benzoin-forming] activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0110095	cellular detoxification of aldehyde	IEP	Predict GO terms from Neighborhoods
MF	GO:0140097	catalytic activity, acting on DNA	IEP	Predict GO terms from Neighborhoods
MF	GO:1901265	nucleoside phosphate binding	IEP	Predict GO terms from Neighborhoods
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1902652	secondary alcohol metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1902653	secondary alcohol biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1903412	response to bile acid	IEP	Predict GO terms from Neighborhoods
BP	GO:1990748	cellular detoxification	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR001926	PLP-dep	125	454
IPR006654	Trp_synth_beta	78	466
IPR036052	Trypto_synt_PLP_dependent	74	467

External Links

No external refs found!

SOLTUB.AGRIA.G00000033166

Expression Profile

Co-expression Networks

Functional Annotation