Coexpression cluster: Cluster_214 (HCCA Clusters (HRR 50 & PCC 0.5))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0009698 phenylpropanoid metabolic process 25.0% (16/64) 3.14 0.0 0.0
GO:0006725 cellular aromatic compound metabolic process 50.0% (32/64) 1.73 0.0 0.0
GO:0009699 phenylpropanoid biosynthetic process 21.88% (14/64) 3.17 0.0 0.0
GO:0019438 aromatic compound biosynthetic process 29.69% (19/64) 2.35 0.0 1e-06
GO:1901360 organic cyclic compound metabolic process 48.44% (31/64) 1.55 0.0 1e-06
GO:0010224 response to UV-B 14.06% (9/64) 3.93 0.0 1e-06
GO:0009058 biosynthetic process 46.88% (30/64) 1.58 0.0 1e-06
GO:0044249 cellular biosynthetic process 43.75% (28/64) 1.64 0.0 1e-06
GO:0044550 secondary metabolite biosynthetic process 23.44% (15/64) 2.69 0.0 1e-06
GO:1901576 organic substance biosynthetic process 45.31% (29/64) 1.61 0.0 1e-06
GO:0019748 secondary metabolic process 26.56% (17/64) 2.45 0.0 1e-06
GO:0071704 organic substance metabolic process 71.88% (46/64) 0.96 0.0 2e-06
GO:0009411 response to UV 17.19% (11/64) 3.29 0.0 2e-06
GO:0009805 coumarin biosynthetic process 9.38% (6/64) 5.07 0.0 3e-06
GO:0008152 metabolic process 73.44% (47/64) 0.89 0.0 5e-06
GO:0009804 coumarin metabolic process 9.38% (6/64) 4.96 0.0 5e-06
GO:0044237 cellular metabolic process 67.19% (43/64) 0.99 0.0 5e-06
GO:1901362 organic cyclic compound biosynthetic process 29.69% (19/64) 2.06 0.0 5e-06
GO:0003913 DNA photolyase activity 4.69% (3/64) 8.03 0.0 1.3e-05
GO:0010421 hydrogen peroxide-mediated programmed cell death 6.25% (4/64) 6.21 0.0 2e-05
GO:0036474 cell death in response to hydrogen peroxide 6.25% (4/64) 6.21 0.0 2e-05
GO:1990641 response to iron ion starvation 7.81% (5/64) 5.17 0.0 2.3e-05
GO:0036473 cell death in response to oxidative stress 6.25% (4/64) 5.58 2e-06 0.000107
GO:0097468 programmed cell death in response to reactive oxygen species 6.25% (4/64) 5.58 2e-06 0.000107
GO:0009987 cellular process 79.69% (51/64) 0.61 5e-06 0.000322
GO:0009809 lignin biosynthetic process 9.38% (6/64) 3.75 6e-06 0.000376
GO:0016706 2-oxoglutarate-dependent dioxygenase activity 9.38% (6/64) 3.65 9e-06 0.000531
GO:0050896 response to stimulus 65.62% (42/64) 0.76 1.2e-05 0.000717
GO:0009416 response to light stimulus 25.0% (16/64) 1.75 1.4e-05 0.000757
GO:0003824 catalytic activity 59.38% (38/64) 0.85 1.3e-05 0.000764
GO:0000719 photoreactive repair 3.12% (2/64) 8.25 1.6e-05 0.000797
GO:0003904 deoxyribodipyrimidine photo-lyase activity 3.12% (2/64) 8.25 1.6e-05 0.000797
GO:0009800 cinnamic acid biosynthetic process 6.25% (4/64) 4.76 1.5e-05 0.000807
GO:0009628 response to abiotic stimulus 42.19% (27/64) 1.14 1.9e-05 0.000946
GO:0009808 lignin metabolic process 9.38% (6/64) 3.42 2.1e-05 0.000999
GO:0009314 response to radiation 25.0% (16/64) 1.68 2.4e-05 0.001118
GO:0106145 scopoletin 8-hydroxylase activity 4.69% (3/64) 5.67 2.9e-05 0.00126
GO:0106147 fraxetin biosynthesis 4.69% (3/64) 5.67 2.9e-05 0.00126
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen 14.06% (9/64) 2.48 3.2e-05 0.001352
GO:0009803 cinnamic acid metabolic process 6.25% (4/64) 4.45 3.6e-05 0.001479
GO:0051213 dioxygenase activity 9.38% (6/64) 3.27 3.7e-05 0.001514
GO:2000831 regulation of steroid hormone secretion 3.12% (2/64) 7.67 3.9e-05 0.001563
GO:0046483 heterocycle metabolic process 32.81% (21/64) 1.32 4.2e-05 0.001643
GO:0009813 flavonoid biosynthetic process 9.38% (6/64) 3.15 6e-05 0.002269
GO:0043167 ion binding 39.06% (25/64) 1.11 7e-05 0.002592
GO:0050563 trans-feruloyl-CoA synthase activity 3.12% (2/64) 6.93 0.000118 0.004262
GO:0010584 pollen exine formation 6.25% (4/64) 3.98 0.000126 0.004449
GO:0018130 heterocycle biosynthetic process 17.19% (11/64) 1.92 0.000131 0.004531
GO:0010927 cellular component assembly involved in morphogenesis 7.81% (5/64) 3.34 0.000138 0.004586
GO:0050660 flavin adenine dinucleotide binding 6.25% (4/64) 3.95 0.000135 0.004594
GO:0000289 nuclear-transcribed mRNA poly(A) tail shortening 3.12% (2/64) 6.67 0.000172 0.005414
GO:0044060 regulation of endocrine process 3.12% (2/64) 6.67 0.000172 0.005414
GO:0010039 response to iron ion 6.25% (4/64) 3.86 0.000171 0.005586
GO:0008150 biological_process 82.81% (53/64) 0.43 0.000194 0.005987
GO:0003674 molecular_function 81.25% (52/64) 0.44 0.000203 0.006139
GO:0009812 flavonoid metabolic process 9.38% (6/64) 2.81 0.000219 0.006511
GO:0071949 FAD binding 4.69% (3/64) 4.63 0.00025 0.007295
GO:0016491 oxidoreductase activity 20.31% (13/64) 1.6 0.000274 0.007871
GO:0018904 ether metabolic process 4.69% (3/64) 4.55 0.000292 0.008233
GO:1900386 positive regulation of flavonol biosynthetic process 3.12% (2/64) 6.25 0.000312 0.00838
GO:0030014 CCR4-NOT complex 3.12% (2/64) 6.25 0.000312 0.00838
GO:0106018 phosphatidylinositol-3,5-bisphosphate phosphatase activity 3.12% (2/64) 6.25 0.000312 0.00838
GO:0044281 small molecule metabolic process 25.0% (16/64) 1.35 0.000349 0.009225
GO:0010208 pollen wall assembly 6.25% (4/64) 3.48 0.000468 0.012179
GO:0006290 pyrimidine dimer repair 3.12% (2/64) 5.93 0.000492 0.012602
GO:0007623 circadian rhythm 9.38% (6/64) 2.55 0.000557 0.01385
GO:0003684 damaged DNA binding 4.69% (3/64) 4.24 0.000553 0.013951
GO:0120255 olefinic compound biosynthetic process 6.25% (4/64) 3.4 0.000572 0.014003
GO:1901615 organic hydroxy compound metabolic process 12.5% (8/64) 2.07 0.0006 0.014473
GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen 9.38% (6/64) 2.52 0.000616 0.014641
GO:0043168 anion binding 21.88% (14/64) 1.37 0.000779 0.017764
GO:0034595 phosphatidylinositol phosphate 5-phosphatase activity 3.12% (2/64) 5.61 0.000773 0.017869
GO:0072319 vesicle uncoating 3.12% (2/64) 5.61 0.000773 0.017869
GO:0006629 lipid metabolic process 20.31% (13/64) 1.43 0.000835 0.018541
GO:0044238 primary metabolic process 51.56% (33/64) 0.69 0.000831 0.018709
GO:0048511 rhythmic process 9.38% (6/64) 2.42 0.000911 0.019693
GO:0034593 phosphatidylinositol bisphosphate phosphatase activity 3.12% (2/64) 5.5 0.000902 0.019764
GO:0033494 ferulate metabolic process 3.12% (2/64) 5.45 0.000971 0.020455
GO:0016653 oxidoreductase activity, acting on NAD(P)H, heme protein as acceptor 3.12% (2/64) 5.45 0.000971 0.020455
GO:0048512 circadian behavior 3.12% (2/64) 5.4 0.001041 0.021672
GO:0007622 rhythmic behavior 3.12% (2/64) 5.35 0.001115 0.022358
GO:0018858 benzoate-CoA ligase activity 3.12% (2/64) 5.35 0.001115 0.022358
GO:0106286 (E)-caffeate-CoA ligase activity 3.12% (2/64) 5.35 0.001115 0.022358
GO:0106290 trans-cinnamate-CoA ligase activity 3.12% (2/64) 5.3 0.00119 0.02359
GO:0016207 4-coumarate-CoA ligase activity 3.12% (2/64) 5.21 0.001349 0.026108
GO:0052866 phosphatidylinositol phosphate phosphatase activity 3.12% (2/64) 5.21 0.001349 0.026108
GO:0032836 glomerular basement membrane development 1.56% (1/64) 9.25 0.001637 0.026727
GO:0102306 benzil reductase [(S)-benzoin-forming] activity 1.56% (1/64) 9.25 0.001637 0.026727
GO:0003914 DNA (6-4) photolyase activity 1.56% (1/64) 9.25 0.001637 0.026727
GO:0006975 DNA damage induced protein phosphorylation 1.56% (1/64) 9.25 0.001637 0.026727
GO:0042622 photoreceptor outer segment membrane 1.56% (1/64) 9.25 0.001637 0.026727
GO:0050958 magnetoreception 1.56% (1/64) 9.25 0.001637 0.026727
GO:2000118 regulation of sodium-dependent phosphate transport 1.56% (1/64) 9.25 0.001637 0.026727
GO:2000832 negative regulation of steroid hormone secretion 1.56% (1/64) 9.25 0.001637 0.026727
GO:2000846 regulation of corticosteroid hormone secretion 1.56% (1/64) 9.25 0.001637 0.026727
GO:2000847 negative regulation of corticosteroid hormone secretion 1.56% (1/64) 9.25 0.001637 0.026727
GO:2000849 regulation of glucocorticoid secretion 1.56% (1/64) 9.25 0.001637 0.026727
GO:2000850 negative regulation of glucocorticoid secretion 1.56% (1/64) 9.25 0.001637 0.026727
GO:0044255 cellular lipid metabolic process 17.19% (11/64) 1.48 0.001689 0.027303
GO:0006367 transcription initiation at RNA polymerase II promoter 3.12% (2/64) 5.17 0.001431 0.027392
GO:0006368 transcription elongation by RNA polymerase II promoter 3.12% (2/64) 5.13 0.001516 0.028369
GO:0009649 entrainment of circadian clock 3.12% (2/64) 5.13 0.001516 0.028369
GO:0004497 monooxygenase activity 9.38% (6/64) 2.25 0.001629 0.030141
GO:0046474 glycerophospholipid biosynthetic process 4.69% (3/64) 3.56 0.002134 0.034168
GO:0006950 response to stress 45.31% (29/64) 0.69 0.002292 0.036006
GO:0019882 antigen processing and presentation 3.12% (2/64) 4.83 0.002282 0.036188
GO:0009881 photoreceptor activity 3.12% (2/64) 4.8 0.002388 0.037163
GO:0042594 response to starvation 9.38% (6/64) 2.13 0.002518 0.037763
GO:0032559 adenyl ribonucleotide binding 15.62% (10/64) 1.5 0.002517 0.038099
GO:0017004 cytochrome complex assembly 3.12% (2/64) 4.76 0.002497 0.038138
GO:0046394 carboxylic acid biosynthetic process 10.94% (7/64) 1.92 0.002478 0.038202
GO:0030554 adenyl nucleotide binding 15.62% (10/64) 1.5 0.002612 0.038825
GO:0032553 ribonucleotide binding 17.19% (11/64) 1.4 0.002666 0.039281
GO:1903085 regulation of sinapate ester biosynthetic process 3.12% (2/64) 4.67 0.002836 0.039677
GO:1903086 negative regulation of sinapate ester biosynthetic process 3.12% (2/64) 4.67 0.002836 0.039677
GO:0051261 protein depolymerization 3.12% (2/64) 4.67 0.002836 0.039677
GO:0009992 cellular water homeostasis 3.12% (2/64) 4.67 0.002836 0.039677
GO:0006836 neurotransmitter transport 3.12% (2/64) 4.7 0.00272 0.039733
GO:0032984 protein-containing complex disassembly 4.69% (3/64) 3.43 0.002772 0.040133
GO:0006354 DNA-templated transcription elongation 3.12% (2/64) 4.64 0.002953 0.040977
GO:0050877 nervous system process 6.25% (4/64) 2.75 0.003028 0.041663
GO:1900377 negative regulation of secondary metabolite biosynthetic process 3.12% (2/64) 4.61 0.003073 0.041941
GO:0021692 cerebellar Purkinje cell layer morphogenesis 1.56% (1/64) 8.25 0.003272 0.042897
GO:0032194 ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate 1.56% (1/64) 8.25 0.003272 0.042897
GO:0102069 zerumbone synthase activity 1.56% (1/64) 8.25 0.003272 0.042897
GO:1903412 response to bile acid 1.56% (1/64) 8.25 0.003272 0.042897
GO:0120206 photoreceptor distal connecting cilium 1.56% (1/64) 8.25 0.003272 0.042897
GO:0048878 chemical homeostasis 14.06% (9/64) 1.55 0.003307 0.043023
GO:0016651 oxidoreductase activity, acting on NAD(P)H 4.69% (3/64) 3.32 0.00341 0.043678
GO:0120254 olefinic compound metabolic process 6.25% (4/64) 2.7 0.003399 0.043873
GO:0042537 benzene-containing compound metabolic process 6.25% (4/64) 2.65 0.003835 0.048747
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_8 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_19 0.01 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_54 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_119 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_127 0.01 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_145 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_178 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_189 0.01 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_191 0.01 Orthogroups with 8 Potato genotypes Compare
Sequences (64) (download table)

InterPro Domains

GO Terms

Family Terms