SOLTUB.AGRIA.G00000033196

Description : 50S ribosomal protein L24

Gene families : OG_02_0003065 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000033196
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_187

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003729	mRNA binding	IEA	AHRD
MF	GO:0003735	structural constituent of ribosome	IEA	AHRD
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005739	mitochondrion	IEA	AHRD
CC	GO:0005840	ribosome	IEA	AHRD
BP	GO:0006412	translation	None	Extended
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
CC	GO:0009526	plastid envelope	None	Extended
BP	GO:0009657	plastid organization	None	Extended
CC	GO:0009941	chloroplast envelope	IEA	AHRD
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019843	rRNA binding	IEA	AHRD
CC	GO:0031967	organelle envelope	None	Extended
CC	GO:0031975	envelope	None	Extended
BP	GO:0032544	plastid translation	IEA	AHRD
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000120	RNA polymerase I transcription regulator complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0000311	plastid large ribosomal subunit	IEP	Predict GO terms from Neighborhoods
CC	GO:0000312	plastid small ribosomal subunit	IEP	Predict GO terms from Neighborhoods
CC	GO:0000314	organellar small ribosomal subunit	IEP	Predict GO terms from Neighborhoods
CC	GO:0000315	organellar large ribosomal subunit	IEP	Predict GO terms from Neighborhoods
BP	GO:0000413	protein peptidyl-prolyl isomerization	IEP	Predict GO terms from Neighborhoods
CC	GO:0000427	plastid-encoded plastid RNA polymerase complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0000500	RNA polymerase I upstream activating factor complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0001163	RNA polymerase I transcription regulatory region sequence-specific DNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0001165	RNA polymerase I cis-regulatory region sequence-specific DNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0001181	RNA polymerase I general transcription initiation factor activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0001503	ossification	IEP	Predict GO terms from Neighborhoods
CC	GO:0001673	male germ cell nucleus	IEP	Predict GO terms from Neighborhoods
BP	GO:0002244	hematopoietic progenitor cell differentiation	IEP	Predict GO terms from Neighborhoods
MF	GO:0003746	translation elongation factor activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004161	dimethylallyltranstransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004311	farnesyltranstransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004337	geranyltranstransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004659	prenyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004746	riboflavin synthase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004807	triose-phosphate isomerase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005527	macrolide binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0005528	FK506 binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0006071	glycerol metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006094	gluconeogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0006335	DNA replication-dependent chromatin assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0006351	DNA-templated transcription	IEP	Predict GO terms from Neighborhoods
BP	GO:0006352	DNA-templated transcription initiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006360	transcription by RNA polymerase I	IEP	Predict GO terms from Neighborhoods
BP	GO:0006361	transcription initiation at RNA polymerase I promoter	IEP	Predict GO terms from Neighborhoods
BP	GO:0006642	triglyceride mobilization	IEP	Predict GO terms from Neighborhoods
BP	GO:0006771	riboflavin metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0008584	male gonad development	IEP	Predict GO terms from Neighborhoods
MF	GO:0008929	methylglyoxal synthase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009231	riboflavin biosynthetic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0009295	nucleoid	IEP	Predict GO terms from Neighborhoods
BP	GO:0009303	rRNA transcription	IEP	Predict GO terms from Neighborhoods
BP	GO:0009438	methylglyoxal metabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0009508	plastid chromosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0009513	etioplast	IEP	Predict GO terms from Neighborhoods
CC	GO:0009529	plastid intermembrane space	IEP	Predict GO terms from Neighborhoods
CC	GO:0009532	plastid stroma	IEP	Predict GO terms from Neighborhoods
CC	GO:0009535	chloroplast thylakoid membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0009543	chloroplast thylakoid lumen	IEP	Predict GO terms from Neighborhoods
CC	GO:0009570	chloroplast stroma	IEP	Predict GO terms from Neighborhoods
CC	GO:0009579	thylakoid	IEP	Predict GO terms from Neighborhoods
BP	GO:0009658	chloroplast organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0009668	plastid membrane organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0010027	thylakoid membrane organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0010043	response to zinc ion	IEP	Predict GO terms from Neighborhoods
BP	GO:0010207	photosystem II assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0010257	NADH dehydrogenase complex assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0010258	NADH dehydrogenase complex (plastoquinone) assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0010275	NAD(P)H dehydrogenase complex assembly	IEP	Predict GO terms from Neighborhoods
CC	GO:0015934	large ribosomal subunit	IEP	Predict GO terms from Neighborhoods
MF	GO:0016853	isomerase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016859	cis-trans isomerase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016861	intramolecular oxidoreductase activity, interconverting aldoses and ketoses	IEP	Predict GO terms from Neighborhoods
BP	GO:0018130	heterocycle biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019242	methylglyoxal biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019253	reductive pentose-phosphate cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:0019400	alditol metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019405	alditol catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019563	glycerol catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019682	glyceraldehyde-3-phosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019685	photosynthesis, dark reaction	IEP	Predict GO terms from Neighborhoods
CC	GO:0022626	cytosolic ribosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0031972	chloroplast intermembrane space	IEP	Predict GO terms from Neighborhoods
CC	GO:0031977	thylakoid lumen	IEP	Predict GO terms from Neighborhoods
CC	GO:0031978	plastid thylakoid lumen	IEP	Predict GO terms from Neighborhoods
BP	GO:0032504	multicellular organism reproduction	IEP	Predict GO terms from Neighborhoods
BP	GO:0032774	RNA biosynthetic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0032991	protein-containing complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0033614	chloroplast proton-transporting ATP synthase complex assembly	IEP	Predict GO terms from Neighborhoods
CC	GO:0034357	photosynthetic membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0042170	plastid membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0042644	chloroplast nucleoid	IEP	Predict GO terms from Neighborhoods
CC	GO:0042646	plastid nucleoid	IEP	Predict GO terms from Neighborhoods
CC	GO:0042651	thylakoid membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0042726	flavin-containing compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042727	flavin-containing compound biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042750	hibernation	IEP	Predict GO terms from Neighborhoods
BP	GO:0042790	nucleolar large rRNA transcription by RNA polymerase I	IEP	Predict GO terms from Neighborhoods
BP	GO:0042793	plastid transcription	IEP	Predict GO terms from Neighborhoods
CC	GO:0043073	germ cell nucleus	IEP	Predict GO terms from Neighborhoods
BP	GO:0043461	proton-transporting ATP synthase complex assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0043692	monoterpene metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0043693	monoterpene biosynthetic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0044391	ribosomal subunit	IEP	Predict GO terms from Neighborhoods
MF	GO:0044687	geranylfarnesyl diphosphate synthase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0045176	apical protein localization	IEP	Predict GO terms from Neighborhoods
BP	GO:0045337	farnesyl diphosphate biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0045638	negative regulation of myeloid cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0045652	regulation of megakaryocyte differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0045653	negative regulation of megakaryocyte differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0046166	glyceraldehyde-3-phosphate biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046174	polyol catabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0055035	plastid thylakoid membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0060211	regulation of nuclear-transcribed mRNA poly(A) tail shortening	IEP	Predict GO terms from Neighborhoods
BP	GO:0060212	negative regulation of nuclear-transcribed mRNA poly(A) tail shortening	IEP	Predict GO terms from Neighborhoods
BP	GO:0070071	proton-transporting two-sector ATPase complex assembly	IEP	Predict GO terms from Neighborhoods
MF	GO:0070181	small ribosomal subunit rRNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0070206	protein trimerization	IEP	Predict GO terms from Neighborhoods
BP	GO:0070207	protein homotrimerization	IEP	Predict GO terms from Neighborhoods
CC	GO:0071781	endoplasmic reticulum cisternal network	IEP	Predict GO terms from Neighborhoods
BP	GO:0080022	primary root development	IEP	Predict GO terms from Neighborhoods
CC	GO:0085035	haustorium	IEP	Predict GO terms from Neighborhoods
BP	GO:0090391	granum assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0097659	nucleic acid-templated transcription	IEP	Predict GO terms from Neighborhoods
BP	GO:1900151	regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay	IEP	Predict GO terms from Neighborhoods
BP	GO:1900152	negative regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay	IEP	Predict GO terms from Neighborhoods
BP	GO:1900871	chloroplast mRNA modification	IEP	Predict GO terms from Neighborhoods
MF	GO:1902444	riboflavin binding	IEP	Predict GO terms from Neighborhoods
CC	GO:1990904	ribonucleoprotein complex	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR008991	Translation_prot_SH3-like_sf	148	250
IPR005824	KOW	155	184
IPR003256	Ribosomal_L24	187	251
IPR003256	Ribosomal_L24	149	251

External Links

No external refs found!

SOLTUB.AGRIA.G00000033196

Expression Profile

Co-expression Networks

Functional Annotation