Coexpression cluster: Cluster_187 (HCCA Clusters (HRR 50 & PCC 0.5))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0042170 plastid membrane 14.47% (11/76) 2.75 1e-06 0.000801
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity 5.26% (4/76) 4.63 2.2e-05 0.006355
GO:1904029 regulation of cyclin-dependent protein kinase activity 5.26% (4/76) 4.63 2.2e-05 0.006355
GO:0009532 plastid stroma 11.84% (9/76) 2.31 8.1e-05 0.007354
GO:0034357 photosynthetic membrane 9.21% (7/76) 2.76 7.9e-05 0.007751
GO:0009668 plastid membrane organization 5.26% (4/76) 4.47 3.4e-05 0.00796
GO:0009570 chloroplast stroma 11.84% (9/76) 2.37 6.1e-05 0.008
GO:0120163 negative regulation of cold-induced thermogenesis 2.63% (2/76) 7.42 5.6e-05 0.008199
GO:0021954 central nervous system neuron development 2.63% (2/76) 7.2 7.8e-05 0.008337
GO:0042651 thylakoid membrane 9.21% (7/76) 2.78 7.4e-05 0.008769
GO:0055035 plastid thylakoid membrane 9.21% (7/76) 2.85 5.6e-05 0.00935
GO:0009535 chloroplast thylakoid membrane 9.21% (7/76) 2.86 5.2e-05 0.010243
GO:0010027 thylakoid membrane organization 5.26% (4/76) 4.68 1.9e-05 0.010988
GO:0010275 NAD(P)H dehydrogenase complex assembly 2.63% (2/76) 6.55 0.000203 0.015932
GO:0046719 regulation by virus of viral protein levels in host cell 2.63% (2/76) 6.55 0.000203 0.015932
GO:0004812 aminoacyl-tRNA ligase activity 3.95% (3/76) 4.5 0.000323 0.019038
GO:0006418 tRNA aminoacylation for protein translation 3.95% (3/76) 4.5 0.000323 0.019038
GO:0016875 ligase activity, forming carbon-oxygen bonds 3.95% (3/76) 4.5 0.000323 0.019038
GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity 3.95% (3/76) 4.5 0.000323 0.019038
GO:0071900 regulation of protein serine/threonine kinase activity 5.26% (4/76) 3.55 0.000396 0.020272
GO:0043038 amino acid activation 3.95% (3/76) 4.42 0.000383 0.020482
GO:0043039 tRNA aminoacylation 3.95% (3/76) 4.42 0.000383 0.020482
GO:0061695 transferase complex, transferring phosphorus-containing groups 6.58% (5/76) 3.1 0.000305 0.022445
GO:0042646 plastid nucleoid 3.95% (3/76) 4.32 0.000466 0.022868
GO:0000381 regulation of alternative mRNA splicing, via spliceosome 3.95% (3/76) 4.27 0.000521 0.024554
GO:1902667 regulation of axon guidance 2.63% (2/76) 5.84 0.000559 0.025345
GO:0001673 male germ cell nucleus 2.63% (2/76) 5.76 0.000624 0.027243
GO:0000427 plastid-encoded plastid RNA polymerase complex 2.63% (2/76) 5.61 0.000765 0.032181
GO:0031969 chloroplast membrane 6.58% (5/76) 2.78 0.000827 0.033588
GO:0009508 plastid chromosome 2.63% (2/76) 5.42 0.001002 0.038058
GO:0021510 spinal cord development 2.63% (2/76) 5.42 0.001002 0.038058
GO:0042793 plastid transcription 2.63% (2/76) 5.36 0.001087 0.040024
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_209 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_227 0.026 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_3 0.013 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_49 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_55 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_120 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_154 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_179 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_181 0.017 Orthogroups with 8 Potato genotypes Compare
Sequences (76) (download table)

InterPro Domains

GO Terms

Family Terms