SOLTUB.AGRIA.G00000033247


Description : Fact complex subunit spt16


Gene families : OG_02_0020923 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000033247
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_119


Type GO Term Name Evidence Source
CC GO:0000791 euchromatin IEA AHRD
CC GO:0005703 polytene chromosome puff IEA AHRD
CC GO:0005705 polytene chromosome interband IEA AHRD
CC GO:0005730 nucleolus IEA AHRD
CC GO:0005829 cytosol IEA AHRD
BP GO:0006260 DNA replication IEA AHRD
BP GO:0006281 DNA repair IEA AHRD
BP GO:0006338 chromatin remodeling IEA AHRD
BP GO:0010228 vegetative to reproductive phase transition of meristem IEA AHRD
MF GO:0031491 nucleosome binding IEA AHRD
BP GO:0032968 positive regulation of transcription elongation by RNA polymerase II IEA AHRD
CC GO:0035101 FACT complex IEA AHRD
MF GO:0046982 protein heterodimerization activity IEA AHRD
MF GO:0047485 protein N-terminus binding IEA AHRD
Type GO Term Name Evidence Source
BP GO:0000245 spliceosomal complex assembly IEP Predict GO terms from Neighborhoods
BP GO:0000278 mitotic cell cycle IEP Predict GO terms from Neighborhoods
BP GO:0000372 Group I intron splicing IEP Predict GO terms from Neighborhoods
BP GO:0000373 Group II intron splicing IEP Predict GO terms from Neighborhoods
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predict GO terms from Neighborhoods
BP GO:0000376 RNA splicing, via transesterification reactions with guanosine as nucleophile IEP Predict GO terms from Neighborhoods
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predict GO terms from Neighborhoods
BP GO:0000381 regulation of alternative mRNA splicing, via spliceosome IEP Predict GO terms from Neighborhoods
BP GO:0000395 mRNA 5'-splice site recognition IEP Predict GO terms from Neighborhoods
CC GO:0000776 kinetochore IEP Predict GO terms from Neighborhoods
BP GO:0000911 cytokinesis by cell plate formation IEP Predict GO terms from Neighborhoods
MF GO:0000993 RNA polymerase II complex binding IEP Predict GO terms from Neighborhoods
MF GO:0001098 basal transcription machinery binding IEP Predict GO terms from Neighborhoods
MF GO:0001099 basal RNA polymerase II transcription machinery binding IEP Predict GO terms from Neighborhoods
BP GO:0001525 angiogenesis IEP Predict GO terms from Neighborhoods
BP GO:0001700 embryonic development via the syncytial blastoderm IEP Predict GO terms from Neighborhoods
BP GO:0002165 instar larval or pupal development IEP Predict GO terms from Neighborhoods
MF GO:0003676 nucleic acid binding IEP Predict GO terms from Neighborhoods
MF GO:0003723 RNA binding IEP Predict GO terms from Neighborhoods
MF GO:0003729 mRNA binding IEP Predict GO terms from Neighborhoods
MF GO:0005080 protein kinase C binding IEP Predict GO terms from Neighborhoods
CC GO:0005737 cytoplasm IEP Predict GO terms from Neighborhoods
CC GO:0005788 endoplasmic reticulum lumen IEP Predict GO terms from Neighborhoods
CC GO:0005847 mRNA cleavage and polyadenylation specificity factor complex IEP Predict GO terms from Neighborhoods
CC GO:0005849 mRNA cleavage factor complex IEP Predict GO terms from Neighborhoods
BP GO:0006353 DNA-templated transcription termination IEP Predict GO terms from Neighborhoods
BP GO:0006369 termination of RNA polymerase II transcription IEP Predict GO terms from Neighborhoods
BP GO:0006376 mRNA splice site selection IEP Predict GO terms from Neighborhoods
BP GO:0006378 mRNA polyadenylation IEP Predict GO terms from Neighborhoods
BP GO:0006379 mRNA cleavage IEP Predict GO terms from Neighborhoods
BP GO:0006396 RNA processing IEP Predict GO terms from Neighborhoods
BP GO:0006397 mRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0006457 protein folding IEP Predict GO terms from Neighborhoods
BP GO:0006458 'de novo' protein folding IEP Predict GO terms from Neighborhoods
BP GO:0007519 skeletal muscle tissue development IEP Predict GO terms from Neighborhoods
BP GO:0008380 RNA splicing IEP Predict GO terms from Neighborhoods
BP GO:0008608 attachment of spindle microtubules to kinetochore IEP Predict GO terms from Neighborhoods
MF GO:0008936 nicotinamidase activity IEP Predict GO terms from Neighborhoods
BP GO:0009237 siderophore metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009792 embryo development ending in birth or egg hatching IEP Predict GO terms from Neighborhoods
MF GO:0010011 auxin binding IEP Predict GO terms from Neighborhoods
BP GO:0010286 heat acclimation IEP Predict GO terms from Neighborhoods
BP GO:0010564 regulation of cell cycle process IEP Predict GO terms from Neighborhoods
BP GO:0016070 RNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0016071 mRNA metabolic process IEP Predict GO terms from Neighborhoods
CC GO:0016363 nuclear matrix IEP Predict GO terms from Neighborhoods
CC GO:0016604 nuclear body IEP Predict GO terms from Neighborhoods
CC GO:0016607 nuclear speck IEP Predict GO terms from Neighborhoods
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP Predict GO terms from Neighborhoods
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP Predict GO terms from Neighborhoods
BP GO:0016999 antibiotic metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0017000 antibiotic biosynthetic process IEP Predict GO terms from Neighborhoods
MF GO:0019237 centromeric DNA binding IEP Predict GO terms from Neighborhoods
BP GO:0019363 pyridine nucleotide biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0019674 NAD metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0022607 cellular component assembly IEP Predict GO terms from Neighborhoods
BP GO:0022618 ribonucleoprotein complex assembly IEP Predict GO terms from Neighborhoods
MF GO:0030544 Hsp70 protein binding IEP Predict GO terms from Neighborhoods
BP GO:0030575 nuclear body organization IEP Predict GO terms from Neighborhoods
BP GO:0031124 mRNA 3'-end processing IEP Predict GO terms from Neighborhoods
BP GO:0031426 polycistronic mRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0031437 regulation of mRNA cleavage IEP Predict GO terms from Neighborhoods
BP GO:0031439 positive regulation of mRNA cleavage IEP Predict GO terms from Neighborhoods
BP GO:0031440 regulation of mRNA 3'-end processing IEP Predict GO terms from Neighborhoods
BP GO:0031442 positive regulation of mRNA 3'-end processing IEP Predict GO terms from Neighborhoods
CC GO:0032153 cell division site IEP Predict GO terms from Neighborhoods
MF GO:0032552 deoxyribonucleotide binding IEP Predict GO terms from Neighborhoods
MF GO:0032554 purine deoxyribonucleotide binding IEP Predict GO terms from Neighborhoods
MF GO:0032558 adenyl deoxyribonucleotide binding IEP Predict GO terms from Neighborhoods
MF GO:0032564 dATP binding IEP Predict GO terms from Neighborhoods
BP GO:0032875 regulation of DNA endoreduplication IEP Predict GO terms from Neighborhoods
BP GO:0032877 positive regulation of DNA endoreduplication IEP Predict GO terms from Neighborhoods
BP GO:0033119 negative regulation of RNA splicing IEP Predict GO terms from Neighborhoods
BP GO:0033120 positive regulation of RNA splicing IEP Predict GO terms from Neighborhoods
BP GO:0033197 response to vitamin E IEP Predict GO terms from Neighborhoods
BP GO:0033273 response to vitamin IEP Predict GO terms from Neighborhoods
CC GO:0034451 centriolar satellite IEP Predict GO terms from Neighborhoods
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Predict GO terms from Neighborhoods
CC GO:0035061 interchromatin granule IEP Predict GO terms from Neighborhoods
BP GO:0035063 nuclear speck organization IEP Predict GO terms from Neighborhoods
BP GO:0035092 sperm DNA condensation IEP Predict GO terms from Neighborhoods
BP GO:0035874 cellular response to copper ion starvation IEP Predict GO terms from Neighborhoods
MF GO:0035925 mRNA 3'-UTR AU-rich region binding IEP Predict GO terms from Neighborhoods
MF GO:0036002 pre-mRNA binding IEP Predict GO terms from Neighborhoods
CC GO:0036477 somatodendritic compartment IEP Predict GO terms from Neighborhoods
BP GO:0042306 regulation of protein import into nucleus IEP Predict GO terms from Neighborhoods
BP GO:0042307 positive regulation of protein import into nucleus IEP Predict GO terms from Neighborhoods
CC GO:0042382 paraspeckles IEP Predict GO terms from Neighborhoods
MF GO:0042562 hormone binding IEP Predict GO terms from Neighborhoods
BP GO:0042750 hibernation IEP Predict GO terms from Neighborhoods
MF GO:0042802 identical protein binding IEP Predict GO terms from Neighborhoods
MF GO:0042826 histone deacetylase binding IEP Predict GO terms from Neighborhoods
MF GO:0043169 cation binding IEP Predict GO terms from Neighborhoods
MF GO:0043175 RNA polymerase core enzyme binding IEP Predict GO terms from Neighborhoods
BP GO:0043484 regulation of RNA splicing IEP Predict GO terms from Neighborhoods
BP GO:0043525 positive regulation of neuron apoptotic process IEP Predict GO terms from Neighborhoods
BP GO:0043631 RNA polyadenylation IEP Predict GO terms from Neighborhoods
BP GO:0043933 protein-containing complex organization IEP Predict GO terms from Neighborhoods
BP GO:0045069 regulation of viral genome replication IEP Predict GO terms from Neighborhoods
BP GO:0045070 positive regulation of viral genome replication IEP Predict GO terms from Neighborhoods
BP GO:0045071 negative regulation of viral genome replication IEP Predict GO terms from Neighborhoods
BP GO:0045740 positive regulation of DNA replication IEP Predict GO terms from Neighborhoods
BP GO:0045787 positive regulation of cell cycle IEP Predict GO terms from Neighborhoods
BP GO:0045793 positive regulation of cell size IEP Predict GO terms from Neighborhoods
BP GO:0046824 positive regulation of nucleocytoplasmic transport IEP Predict GO terms from Neighborhoods
BP GO:0046825 regulation of protein export from nucleus IEP Predict GO terms from Neighborhoods
BP GO:0046827 positive regulation of protein export from nucleus IEP Predict GO terms from Neighborhoods
MF GO:0046872 metal ion binding IEP Predict GO terms from Neighborhoods
BP GO:0048024 regulation of mRNA splicing, via spliceosome IEP Predict GO terms from Neighborhoods
BP GO:0048025 negative regulation of mRNA splicing, via spliceosome IEP Predict GO terms from Neighborhoods
BP GO:0048026 positive regulation of mRNA splicing, via spliceosome IEP Predict GO terms from Neighborhoods
BP GO:0048524 positive regulation of viral process IEP Predict GO terms from Neighborhoods
BP GO:0048525 negative regulation of viral process IEP Predict GO terms from Neighborhoods
MF GO:0050265 RNA uridylyltransferase activity IEP Predict GO terms from Neighborhoods
BP GO:0050684 regulation of mRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0050685 positive regulation of mRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0050686 negative regulation of mRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0050792 regulation of viral process IEP Predict GO terms from Neighborhoods
MF GO:0051082 unfolded protein binding IEP Predict GO terms from Neighborhoods
BP GO:0051084 'de novo' post-translational protein folding IEP Predict GO terms from Neighborhoods
BP GO:0051085 chaperone cofactor-dependent protein refolding IEP Predict GO terms from Neighborhoods
BP GO:0051259 protein complex oligomerization IEP Predict GO terms from Neighborhoods
BP GO:0051290 protein heterotetramerization IEP Predict GO terms from Neighborhoods
BP GO:0051291 protein heterooligomerization IEP Predict GO terms from Neighborhoods
BP GO:0051302 regulation of cell division IEP Predict GO terms from Neighborhoods
BP GO:0051315 attachment of mitotic spindle microtubules to kinetochore IEP Predict GO terms from Neighborhoods
BP GO:0051316 attachment of spindle microtubules to kinetochore involved in meiotic chromosome segregation IEP Predict GO terms from Neighborhoods
BP GO:0051382 kinetochore assembly IEP Predict GO terms from Neighborhoods
BP GO:0051383 kinetochore organization IEP Predict GO terms from Neighborhoods
BP GO:0051455 monopolar spindle attachment to meiosis I kinetochore IEP Predict GO terms from Neighborhoods
BP GO:0051781 positive regulation of cell division IEP Predict GO terms from Neighborhoods
BP GO:0060537 muscle tissue development IEP Predict GO terms from Neighborhoods
BP GO:0061083 regulation of protein refolding IEP Predict GO terms from Neighborhoods
BP GO:0061084 negative regulation of protein refolding IEP Predict GO terms from Neighborhoods
BP GO:0062176 R-loop disassembly IEP Predict GO terms from Neighborhoods
BP GO:0065003 protein-containing complex assembly IEP Predict GO terms from Neighborhoods
MF GO:0070063 RNA polymerase binding IEP Predict GO terms from Neighborhoods
MF GO:0070569 uridylyltransferase activity IEP Predict GO terms from Neighborhoods
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Predict GO terms from Neighborhoods
MF GO:0071889 14-3-3 protein binding IEP Predict GO terms from Neighborhoods
BP GO:0072525 pyridine-containing compound biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP Predict GO terms from Neighborhoods
BP GO:0090316 positive regulation of intracellular protein transport IEP Predict GO terms from Neighborhoods
BP GO:0090501 RNA phosphodiester bond hydrolysis IEP Predict GO terms from Neighborhoods
BP GO:0090615 mitochondrial mRNA processing IEP Predict GO terms from Neighborhoods
MF GO:0097159 organic cyclic compound binding IEP Predict GO terms from Neighborhoods
BP GO:0098787 mRNA cleavage involved in mRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0098789 pre-mRNA cleavage required for polyadenylation IEP Predict GO terms from Neighborhoods
BP GO:0110104 mRNA alternative polyadenylation IEP Predict GO terms from Neighborhoods
BP GO:0120126 response to copper ion starvation IEP Predict GO terms from Neighborhoods
BP GO:0140040 mitochondrial polycistronic RNA processing IEP Predict GO terms from Neighborhoods
BP GO:1900180 regulation of protein localization to nucleus IEP Predict GO terms from Neighborhoods
BP GO:1900182 positive regulation of protein localization to nucleus IEP Predict GO terms from Neighborhoods
BP GO:1900363 regulation of mRNA polyadenylation IEP Predict GO terms from Neighborhoods
BP GO:1900365 positive regulation of mRNA polyadenylation IEP Predict GO terms from Neighborhoods
BP GO:1901216 positive regulation of neuron death IEP Predict GO terms from Neighborhoods
MF GO:1901363 heterocyclic compound binding IEP Predict GO terms from Neighborhoods
BP GO:1901532 regulation of hematopoietic progenitor cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:1901534 positive regulation of hematopoietic progenitor cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:1903311 regulation of mRNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1903312 negative regulation of mRNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1903313 positive regulation of mRNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1903332 regulation of protein folding IEP Predict GO terms from Neighborhoods
BP GO:1903333 negative regulation of protein folding IEP Predict GO terms from Neighborhoods
BP GO:1903900 regulation of viral life cycle IEP Predict GO terms from Neighborhoods
BP GO:1905456 regulation of lymphoid progenitor cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:1905458 positive regulation of lymphoid progenitor cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:1990120 messenger ribonucleoprotein complex assembly IEP Predict GO terms from Neighborhoods
BP GO:2000105 positive regulation of DNA-templated DNA replication IEP Predict GO terms from Neighborhoods
BP GO:2000736 regulation of stem cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:2000738 positive regulation of stem cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:2000973 regulation of pro-B cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:2000975 positive regulation of pro-B cell differentiation IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR029148 FACT-Spt16_Nlobe 24 190
IPR013719 RTT106/SPT16-like_middle_dom 833 919
IPR000994 Pept_M24 207 437
IPR013953 FACT_Spt16 552 706
IPR036005 Creatinase/aminopeptidase-like 203 464
No external refs found!