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  5. SOLTUB.AGRIA.G00000033301

SOLTUB.AGRIA.G00000033301


Description : Multiple organellar RNA editing factor 8, chloroplastic/mitochondrial


Gene families : OG_02_0020927 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000033301
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_255


Type GO Term Name Evidence Source
MF GO:0003729 mRNA binding IEA AHRD
CC GO:0005739 mitochondrion IEA AHRD
BP GO:0006397 mRNA processing IEA AHRD
CC GO:0009507 chloroplast IEA AHRD
BP GO:0009657 plastid organization IEA AHRD
BP GO:0016554 cytidine to uridine editing IEA AHRD
MF GO:0042803 protein homodimerization activity IEA AHRD
MF GO:0050897 cobalt ion binding IEA AHRD
BP GO:0080156 mitochondrial mRNA modification IEA AHRD
BP GO:1900871 chloroplast mRNA modification IEA AHRD
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Type GO Term Name Evidence Source
BP GO:0000045 autophagosome assembly IEP Predict GO terms from Neighborhoods
CC GO:0000243 commitment complex IEP Predict GO terms from Neighborhoods
BP GO:0000245 spliceosomal complex assembly IEP Predict GO terms from Neighborhoods
BP GO:0000381 regulation of alternative mRNA splicing, via spliceosome IEP Predict GO terms from Neighborhoods
BP GO:0000387 spliceosomal snRNP assembly IEP Predict GO terms from Neighborhoods
BP GO:0000389 mRNA 3'-splice site recognition IEP Predict GO terms from Neighborhoods
BP GO:0000395 mRNA 5'-splice site recognition IEP Predict GO terms from Neighborhoods
MF GO:0000993 RNA polymerase II complex binding IEP Predict GO terms from Neighborhoods
MF GO:0001098 basal transcription machinery binding IEP Predict GO terms from Neighborhoods
MF GO:0001099 basal RNA polymerase II transcription machinery binding IEP Predict GO terms from Neighborhoods
BP GO:0001711 endodermal cell fate commitment IEP Predict GO terms from Neighborhoods
MF GO:0001882 nucleoside binding IEP Predict GO terms from Neighborhoods
MF GO:0001884 pyrimidine nucleoside binding IEP Predict GO terms from Neighborhoods
BP GO:0002478 antigen processing and presentation of exogenous peptide antigen IEP Predict GO terms from Neighborhoods
BP GO:0002495 antigen processing and presentation of peptide antigen via MHC class II IEP Predict GO terms from Neighborhoods
BP GO:0002504 antigen processing and presentation of peptide or polysaccharide antigen via MHC class II IEP Predict GO terms from Neighborhoods
MF GO:0004136 deoxyadenosine kinase activity IEP Predict GO terms from Neighborhoods
MF GO:0004137 deoxycytidine kinase activity IEP Predict GO terms from Neighborhoods
MF GO:0004138 deoxyguanosine kinase activity IEP Predict GO terms from Neighborhoods
MF GO:0004190 aspartic-type endopeptidase activity IEP Predict GO terms from Neighborhoods
MF GO:0004365 glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity IEP Predict GO terms from Neighborhoods
MF GO:0004462 lactoylglutathione lyase activity IEP Predict GO terms from Neighborhoods
CC GO:0005681 spliceosomal complex IEP Predict GO terms from Neighborhoods
CC GO:0005684 U2-type spliceosomal complex IEP Predict GO terms from Neighborhoods
CC GO:0005685 U1 snRNP IEP Predict GO terms from Neighborhoods
CC GO:0005686 U2 snRNP IEP Predict GO terms from Neighborhoods
CC GO:0005740 mitochondrial envelope IEP Predict GO terms from Neighborhoods
CC GO:0005775 vacuolar lumen IEP Predict GO terms from Neighborhoods
CC GO:0005829 cytosol IEP Predict GO terms from Neighborhoods
BP GO:0006006 glucose metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006089 lactate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006090 pyruvate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006094 gluconeogenesis IEP Predict GO terms from Neighborhoods
BP GO:0006096 glycolytic process IEP Predict GO terms from Neighborhoods
BP GO:0006163 purine nucleotide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006165 nucleoside diphosphate phosphorylation IEP Predict GO terms from Neighborhoods
BP GO:0006213 pyrimidine nucleoside metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006261 DNA-templated DNA replication IEP Predict GO terms from Neighborhoods
BP GO:0006264 mitochondrial DNA replication IEP Predict GO terms from Neighborhoods
BP GO:0006376 mRNA splice site selection IEP Predict GO terms from Neighborhoods
BP GO:0006378 mRNA polyadenylation IEP Predict GO terms from Neighborhoods
BP GO:0006513 protein monoubiquitination IEP Predict GO terms from Neighborhoods
BP GO:0006753 nucleoside phosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006757 ATP generation from ADP IEP Predict GO terms from Neighborhoods
CC GO:0008023 transcription elongation factor complex IEP Predict GO terms from Neighborhoods
MF GO:0008270 zinc ion binding IEP Predict GO terms from Neighborhoods
BP GO:0009116 nucleoside metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009117 nucleotide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009120 deoxyribonucleoside metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009123 nucleoside monophosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009124 nucleoside monophosphate biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009132 nucleoside diphosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009141 nucleoside triphosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009151 purine deoxyribonucleotide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009157 deoxyribonucleoside monophosphate biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009162 deoxyribonucleoside monophosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009262 deoxyribonucleotide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009394 2'-deoxyribonucleotide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009438 methylglyoxal metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0010154 fruit development IEP Predict GO terms from Neighborhoods
BP GO:0010390 histone monoubiquitination IEP Predict GO terms from Neighborhoods
BP GO:0010950 positive regulation of endopeptidase activity IEP Predict GO terms from Neighborhoods
BP GO:0010952 positive regulation of peptidase activity IEP Predict GO terms from Neighborhoods
BP GO:0010976 positive regulation of neuron projection development IEP Predict GO terms from Neighborhoods
CC GO:0015030 Cajal body IEP Predict GO terms from Neighborhoods
BP GO:0016574 histone ubiquitination IEP Predict GO terms from Neighborhoods
CC GO:0016593 Cdc73/Paf1 complex IEP Predict GO terms from Neighborhoods
CC GO:0016604 nuclear body IEP Predict GO terms from Neighborhoods
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Predict GO terms from Neighborhoods
MF GO:0016836 hydro-lyase activity IEP Predict GO terms from Neighborhoods
MF GO:0016846 carbon-sulfur lyase activity IEP Predict GO terms from Neighborhoods
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Predict GO terms from Neighborhoods
MF GO:0017069 snRNA binding IEP Predict GO terms from Neighborhoods
BP GO:0018022 peptidyl-lysine methylation IEP Predict GO terms from Neighborhoods
MF GO:0019136 deoxynucleoside kinase activity IEP Predict GO terms from Neighborhoods
MF GO:0019172 glyoxalase III activity IEP Predict GO terms from Neighborhoods
MF GO:0019205 nucleobase-containing compound kinase activity IEP Predict GO terms from Neighborhoods
MF GO:0019206 nucleoside kinase activity IEP Predict GO terms from Neighborhoods
BP GO:0019249 lactate biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0019318 hexose metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0019319 hexose biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0019637 organophosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0019692 deoxyribose phosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0019882 antigen processing and presentation IEP Predict GO terms from Neighborhoods
BP GO:0019884 antigen processing and presentation of exogenous antigen IEP Predict GO terms from Neighborhoods
BP GO:0019886 antigen processing and presentation of exogenous peptide antigen via MHC class II IEP Predict GO terms from Neighborhoods
BP GO:0022607 cellular component assembly IEP Predict GO terms from Neighborhoods
BP GO:0022618 ribonucleoprotein complex assembly IEP Predict GO terms from Neighborhoods
BP GO:0030091 protein repair IEP Predict GO terms from Neighborhoods
BP GO:0030177 positive regulation of Wnt signaling pathway IEP Predict GO terms from Neighborhoods
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Predict GO terms from Neighborhoods
MF GO:0030619 U1 snRNA binding IEP Predict GO terms from Neighborhoods
MF GO:0030627 pre-mRNA 5'-splice site binding IEP Predict GO terms from Neighborhoods
BP GO:0031123 RNA 3'-end processing IEP Predict GO terms from Neighborhoods
BP GO:0031124 mRNA 3'-end processing IEP Predict GO terms from Neighborhoods
BP GO:0031346 positive regulation of cell projection organization IEP Predict GO terms from Neighborhoods
BP GO:0031440 regulation of mRNA 3'-end processing IEP Predict GO terms from Neighborhoods
BP GO:0031442 positive regulation of mRNA 3'-end processing IEP Predict GO terms from Neighborhoods
BP GO:0031648 protein destabilization IEP Predict GO terms from Neighborhoods
CC GO:0031974 membrane-enclosed lumen IEP Predict GO terms from Neighborhoods
CC GO:0032009 early phagosome IEP Predict GO terms from Neighborhoods
BP GO:0032042 mitochondrial DNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0032496 response to lipopolysaccharide IEP Predict GO terms from Neighborhoods
MF GO:0032546 deoxyribonucleoside binding IEP Predict GO terms from Neighborhoods
MF GO:0032548 pyrimidine deoxyribonucleoside binding IEP Predict GO terms from Neighborhoods
BP GO:0032784 regulation of DNA-templated transcription elongation IEP Predict GO terms from Neighborhoods
BP GO:0032786 positive regulation of DNA-templated transcription, elongation IEP Predict GO terms from Neighborhoods
BP GO:0032968 positive regulation of transcription elongation by RNA polymerase II IEP Predict GO terms from Neighborhoods
CC GO:0032991 protein-containing complex IEP Predict GO terms from Neighborhoods
BP GO:0033523 histone H2B ubiquitination IEP Predict GO terms from Neighborhoods
BP GO:0034059 response to anoxia IEP Predict GO terms from Neighborhoods
BP GO:0034243 regulation of transcription elongation by RNA polymerase II IEP Predict GO terms from Neighborhoods
BP GO:0034402 recruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex IEP Predict GO terms from Neighborhoods
BP GO:0034968 histone lysine methylation IEP Predict GO terms from Neighborhoods
MF GO:0036002 pre-mRNA binding IEP Predict GO terms from Neighborhoods
BP GO:0042180 cellular ketone metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0042182 ketone catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0042278 purine nucleoside metabolic process IEP Predict GO terms from Neighborhoods
MF GO:0042301 phosphate ion binding IEP Predict GO terms from Neighborhoods
MF GO:0043175 RNA polymerase core enzyme binding IEP Predict GO terms from Neighborhoods
CC GO:0043202 lysosomal lumen IEP Predict GO terms from Neighborhoods
CC GO:0043233 organelle lumen IEP Predict GO terms from Neighborhoods
BP GO:0043280 positive regulation of cysteine-type endopeptidase activity involved in apoptotic process IEP Predict GO terms from Neighborhoods
BP GO:0043281 regulation of cysteine-type endopeptidase activity involved in apoptotic process IEP Predict GO terms from Neighborhoods
BP GO:0043631 RNA polyadenylation IEP Predict GO terms from Neighborhoods
MF GO:0043891 glyceraldehyde-3-phosphate dehydrogenase (NAD(P)+) (phosphorylating) activity IEP Predict GO terms from Neighborhoods
BP GO:0043933 protein-containing complex organization IEP Predict GO terms from Neighborhoods
BP GO:0045165 cell fate commitment IEP Predict GO terms from Neighborhoods
CC GO:0045335 phagocytic vesicle IEP Predict GO terms from Neighborhoods
BP GO:0045637 regulation of myeloid cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:0045638 negative regulation of myeloid cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:0046031 ADP metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046034 ATP metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046092 deoxycytidine metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046125 pyrimidine deoxyribonucleoside metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046185 aldehyde catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046364 monosaccharide biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0046686 response to cadmium ion IEP Predict GO terms from Neighborhoods
BP GO:0046939 nucleotide phosphorylation IEP Predict GO terms from Neighborhoods
BP GO:0048002 antigen processing and presentation of peptide antigen IEP Predict GO terms from Neighborhoods
BP GO:0048024 regulation of mRNA splicing, via spliceosome IEP Predict GO terms from Neighborhoods
BP GO:0048145 regulation of fibroblast proliferation IEP Predict GO terms from Neighborhoods
BP GO:0048147 negative regulation of fibroblast proliferation IEP Predict GO terms from Neighborhoods
MF GO:0050661 NADP binding IEP Predict GO terms from Neighborhoods
BP GO:0050678 regulation of epithelial cell proliferation IEP Predict GO terms from Neighborhoods
BP GO:0050680 negative regulation of epithelial cell proliferation IEP Predict GO terms from Neighborhoods
BP GO:0050684 regulation of mRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0050685 positive regulation of mRNA processing IEP Predict GO terms from Neighborhoods
MF GO:0051287 NAD binding IEP Predict GO terms from Neighborhoods
BP GO:0051345 positive regulation of hydrolase activity IEP Predict GO terms from Neighborhoods
BP GO:0051568 histone H3-K4 methylation IEP Predict GO terms from Neighborhoods
BP GO:0051596 methylglyoxal catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0052548 regulation of endopeptidase activity IEP Predict GO terms from Neighborhoods
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0060795 cell fate commitment involved in formation of primary germ layer IEP Predict GO terms from Neighborhoods
BP GO:0061727 methylglyoxal catabolic process to lactate IEP Predict GO terms from Neighborhoods
BP GO:0065003 protein-containing complex assembly IEP Predict GO terms from Neighborhoods
MF GO:0070001 aspartic-type peptidase activity IEP Predict GO terms from Neighborhoods
CC GO:0070013 intracellular organelle lumen IEP Predict GO terms from Neighborhoods
MF GO:0070063 RNA polymerase binding IEP Predict GO terms from Neighborhoods
MF GO:0070403 NAD+ binding IEP Predict GO terms from Neighborhoods
MF GO:0070990 snRNP binding IEP Predict GO terms from Neighborhoods
CC GO:0071004 U2-type prespliceosome IEP Predict GO terms from Neighborhoods
CC GO:0071005 U2-type precatalytic spliceosome IEP Predict GO terms from Neighborhoods
CC GO:0071010 prespliceosome IEP Predict GO terms from Neighborhoods
CC GO:0071011 precatalytic spliceosome IEP Predict GO terms from Neighborhoods
CC GO:0071013 catalytic step 2 spliceosome IEP Predict GO terms from Neighborhoods
BP GO:0071216 cellular response to biotic stimulus IEP Predict GO terms from Neighborhoods
BP GO:0071219 cellular response to molecule of bacterial origin IEP Predict GO terms from Neighborhoods
BP GO:0071222 cellular response to lipopolysaccharide IEP Predict GO terms from Neighborhoods
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Predict GO terms from Neighborhoods
BP GO:0072521 purine-containing compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Predict GO terms from Neighborhoods
CC GO:0097525 spliceosomal snRNP complex IEP Predict GO terms from Neighborhoods
CC GO:0120114 Sm-like protein family complex IEP Predict GO terms from Neighborhoods
CC GO:0140513 nuclear protein-containing complex IEP Predict GO terms from Neighborhoods
BP GO:1901989 positive regulation of cell cycle phase transition IEP Predict GO terms from Neighborhoods
BP GO:1901991 negative regulation of mitotic cell cycle phase transition IEP Predict GO terms from Neighborhoods
BP GO:1902806 regulation of cell cycle G1/S phase transition IEP Predict GO terms from Neighborhoods
BP GO:1902807 negative regulation of cell cycle G1/S phase transition IEP Predict GO terms from Neighborhoods
BP GO:1902808 positive regulation of cell cycle G1/S phase transition IEP Predict GO terms from Neighborhoods
BP GO:1903241 U2-type prespliceosome assembly IEP Predict GO terms from Neighborhoods
BP GO:1903311 regulation of mRNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1903706 regulation of hemopoiesis IEP Predict GO terms from Neighborhoods
BP GO:1905037 autophagosome organization IEP Predict GO terms from Neighborhoods
MF GO:1990446 U1 snRNP binding IEP Predict GO terms from Neighborhoods
CC GO:1990904 ribonucleoprotein complex IEP Predict GO terms from Neighborhoods
BP GO:2000045 regulation of G1/S transition of mitotic cell cycle IEP Predict GO terms from Neighborhoods
BP GO:2000116 regulation of cysteine-type endopeptidase activity IEP Predict GO terms from Neighborhoods
BP GO:2000134 negative regulation of G1/S transition of mitotic cell cycle IEP Predict GO terms from Neighborhoods
BP GO:2001056 positive regulation of cysteine-type endopeptidase activity IEP Predict GO terms from Neighborhoods

No InterPro domains available for this sequence

No external refs found!