SOLTUB.AGRIA.G00000033474

Description : F-box protein

Gene families : OG_02_0000403 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000033474
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_159

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	AHRD
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	AHRD
CC	GO:0005911	cell-cell junction	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	IEA	AHRD
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006952	defense response	None	Extended
BP	GO:0008150	biological_process	IEA	AHRD
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008284	positive regulation of cell population proliferation	IEA	AHRD
CC	GO:0009506	plasmodesma	IEA	AHRD
BP	GO:0009743	response to carbohydrate	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	AHRD
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0030054	cell junction	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0033037	polysaccharide localization	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0042127	regulation of cell population proliferation	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	AHRD
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0052542	defense response by callose deposition	IEA	AHRD
BP	GO:0052545	callose localization	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
CC	GO:0070161	anchoring junction	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000171	ribonuclease MRP activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0000172	ribonuclease MRP complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0000447	endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	Predict GO terms from Neighborhoods
BP	GO:0000463	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	Predict GO terms from Neighborhoods
BP	GO:0000469	cleavage involved in rRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0000470	maturation of LSU-rRNA	IEP	Predict GO terms from Neighborhoods
BP	GO:0000478	endonucleolytic cleavage involved in rRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0000479	endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	Predict GO terms from Neighborhoods
MF	GO:0000976	transcription cis-regulatory region binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific	IEP	Predict GO terms from Neighborhoods
MF	GO:0001067	transcription regulatory region nucleic acid binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0001216	DNA-binding transcription activator activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0001708	cell fate specification	IEP	Predict GO terms from Neighborhoods
BP	GO:0001889	liver development	IEP	Predict GO terms from Neighborhoods
MF	GO:0003690	double-stranded DNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0003723	RNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0003735	structural constituent of ribosome	IEP	Predict GO terms from Neighborhoods
MF	GO:0004518	nuclease activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004519	endonuclease activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004521	endoribonuclease activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004540	ribonuclease activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005732	sno(s)RNA-containing ribonucleoprotein complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0006364	rRNA processing	IEP	Predict GO terms from Neighborhoods
MF	GO:0008097	5S rRNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0009690	cytokinin metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009691	cytokinin biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009736	cytokinin-activated signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0009739	response to gibberellin	IEP	Predict GO terms from Neighborhoods
BP	GO:0009756	carbohydrate mediated signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0009789	positive regulation of abscisic acid-activated signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0009900	dehiscence	IEP	Predict GO terms from Neighborhoods
BP	GO:0009901	anther dehiscence	IEP	Predict GO terms from Neighborhoods
BP	GO:0009911	positive regulation of flower development	IEP	Predict GO terms from Neighborhoods
BP	GO:0009934	regulation of meristem structural organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0009966	regulation of signal transduction	IEP	Predict GO terms from Neighborhoods
BP	GO:0010022	meristem determinacy	IEP	Predict GO terms from Neighborhoods
BP	GO:0010089	xylem development	IEP	Predict GO terms from Neighborhoods
BP	GO:0010093	specification of floral organ identity	IEP	Predict GO terms from Neighborhoods
BP	GO:0010094	specification of carpel identity	IEP	Predict GO terms from Neighborhoods
BP	GO:0010115	regulation of abscisic acid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010118	stomatal movement	IEP	Predict GO terms from Neighborhoods
BP	GO:0010182	sugar mediated signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0010187	negative regulation of seed germination	IEP	Predict GO terms from Neighborhoods
BP	GO:0010496	intercellular transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0010497	plasmodesmata-mediated intercellular transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0010582	floral meristem determinacy	IEP	Predict GO terms from Neighborhoods
BP	GO:0010646	regulation of cell communication	IEP	Predict GO terms from Neighborhoods
BP	GO:0010928	regulation of auxin mediated signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0010930	negative regulation of auxin mediated signaling pathway	IEP	Predict GO terms from Neighborhoods
CC	GO:0015630	microtubule cytoskeleton	IEP	Predict GO terms from Neighborhoods
CC	GO:0015934	large ribosomal subunit	IEP	Predict GO terms from Neighborhoods
BP	GO:0019747	regulation of isoprenoid metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0019843	rRNA binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0022625	cytosolic large ribosomal subunit	IEP	Predict GO terms from Neighborhoods
BP	GO:0023051	regulation of signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0031099	regeneration	IEP	Predict GO terms from Neighborhoods
BP	GO:0031100	animal organ regeneration	IEP	Predict GO terms from Neighborhoods
CC	GO:0031672	A band	IEP	Predict GO terms from Neighborhoods
BP	GO:0034754	cellular hormone metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042446	hormone biosynthetic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0042788	polysomal ribosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0044391	ribosomal subunit	IEP	Predict GO terms from Neighborhoods
BP	GO:0048316	seed development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048732	gland development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048856	anatomical structure development	IEP	Predict GO terms from Neighborhoods
BP	GO:0090305	nucleic acid phosphodiester bond hydrolysis	IEP	Predict GO terms from Neighborhoods
BP	GO:0090332	stomatal closure	IEP	Predict GO terms from Neighborhoods
BP	GO:0090501	RNA phosphodiester bond hydrolysis	IEP	Predict GO terms from Neighborhoods
BP	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic	IEP	Predict GO terms from Neighborhoods
BP	GO:0090701	specification of plant organ identity	IEP	Predict GO terms from Neighborhoods
BP	GO:0097421	liver regeneration	IEP	Predict GO terms from Neighborhoods
BP	GO:1901000	regulation of response to salt stress	IEP	Predict GO terms from Neighborhoods
BP	GO:1901002	positive regulation of response to salt stress	IEP	Predict GO terms from Neighborhoods
CC	GO:1902555	endoribonuclease complex	IEP	Predict GO terms from Neighborhoods
BP	GO:1902584	positive regulation of response to water deprivation	IEP	Predict GO terms from Neighborhoods
BP	GO:1902930	regulation of alcohol biosynthetic process	IEP	Predict GO terms from Neighborhoods
CC	GO:1905348	endonuclease complex	IEP	Predict GO terms from Neighborhoods
MF	GO:1990837	sequence-specific double-stranded DNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:2000028	regulation of photoperiodism, flowering	IEP	Predict GO terms from Neighborhoods
BP	GO:2000070	regulation of response to water deprivation	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR036047	F-box-like_dom_sf	9	105
IPR017451	F-box-assoc_interact_dom	108	340
IPR001810	F-box_dom	11	45
IPR006527	F-box-assoc_dom_typ1	217	313

External Links

No external refs found!

SOLTUB.AGRIA.G00000033474

Expression Profile

Co-expression Networks

Functional Annotation