1. Home
  2. Species
  3. Solanum tuberosum Agria
  4. Sequence
  5. SOLTUB.AGRIA.G00000033545

SOLTUB.AGRIA.G00000033545


Description : ribosomal RNA-processing protein


Gene families : OG_02_0010777 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000033545
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_256


Type GO Term Name Evidence Source
BP GO:0000967 rRNA 5'-end processing IEA AHRD
MF GO:0003723 RNA binding IEA AHRD
MF GO:0004527 exonuclease activity IEA AHRD
CC GO:0005634 nucleus IEA AHRD
CC GO:0005730 nucleolus IEA AHRD
CC GO:0005737 cytoplasm IEA AHRD
BP GO:0006364 rRNA processing IEA AHRD
BP GO:0042254 ribosome biogenesis IEA AHRD
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEA AHRD
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000083 regulation of transcription involved in G1/S transition of mitotic cell cycle IEP Predict GO terms from Neighborhoods
BP GO:0000338 protein deneddylation IEP Predict GO terms from Neighborhoods
BP GO:0000354 cis assembly of pre-catalytic spliceosome IEP Predict GO terms from Neighborhoods
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Predict GO terms from Neighborhoods
BP GO:0000414 regulation of histone H3-K36 methylation IEP Predict GO terms from Neighborhoods
BP GO:0000416 positive regulation of histone H3-K36 methylation IEP Predict GO terms from Neighborhoods
CC GO:0000785 chromatin IEP Predict GO terms from Neighborhoods
MF GO:0000993 RNA polymerase II complex binding IEP Predict GO terms from Neighborhoods
BP GO:0001207 obsolete histone displacement IEP Predict GO terms from Neighborhoods
BP GO:0001501 skeletal system development IEP Predict GO terms from Neighborhoods
BP GO:0001503 ossification IEP Predict GO terms from Neighborhoods
BP GO:0001833 inner cell mass cell proliferation IEP Predict GO terms from Neighborhoods
BP GO:0001843 neural tube closure IEP Predict GO terms from Neighborhoods
BP GO:0002181 cytoplasmic translation IEP Predict GO terms from Neighborhoods
BP GO:0002227 innate immune response in mucosa IEP Predict GO terms from Neighborhoods
BP GO:0002251 organ or tissue specific immune response IEP Predict GO terms from Neighborhoods
BP GO:0002385 mucosal immune response IEP Predict GO terms from Neighborhoods
BP GO:0002574 thrombocyte differentiation IEP Predict GO terms from Neighborhoods
MF GO:0003735 structural constituent of ribosome IEP Predict GO terms from Neighborhoods
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Predict GO terms from Neighborhoods
MF GO:0005527 macrolide binding IEP Predict GO terms from Neighborhoods
MF GO:0005528 FK506 binding IEP Predict GO terms from Neighborhoods
CC GO:0005685 U1 snRNP IEP Predict GO terms from Neighborhoods
CC GO:0005686 U2 snRNP IEP Predict GO terms from Neighborhoods
CC GO:0005744 TIM23 mitochondrial import inner membrane translocase complex IEP Predict GO terms from Neighborhoods
BP GO:0006325 chromatin organization IEP Predict GO terms from Neighborhoods
BP GO:0006334 nucleosome assembly IEP Predict GO terms from Neighborhoods
BP GO:0006338 chromatin remodeling IEP Predict GO terms from Neighborhoods
BP GO:0006412 translation IEP Predict GO terms from Neighborhoods
BP GO:0006959 humoral immune response IEP Predict GO terms from Neighborhoods
BP GO:0007006 mitochondrial membrane organization IEP Predict GO terms from Neighborhoods
BP GO:0007007 inner mitochondrial membrane organization IEP Predict GO terms from Neighborhoods
BP GO:0007127 meiosis I IEP Predict GO terms from Neighborhoods
BP GO:0007141 male meiosis I IEP Predict GO terms from Neighborhoods
BP GO:0007276 gamete generation IEP Predict GO terms from Neighborhoods
BP GO:0007282 cystoblast division IEP Predict GO terms from Neighborhoods
BP GO:0007498 mesoderm development IEP Predict GO terms from Neighborhoods
BP GO:0007530 sex determination IEP Predict GO terms from Neighborhoods
BP GO:0007538 primary sex determination IEP Predict GO terms from Neighborhoods
BP GO:0007539 primary sex determination, soma IEP Predict GO terms from Neighborhoods
BP GO:0007542 primary sex determination, germ-line IEP Predict GO terms from Neighborhoods
BP GO:0007600 sensory perception IEP Predict GO terms from Neighborhoods
BP GO:0007605 sensory perception of sound IEP Predict GO terms from Neighborhoods
CC GO:0008023 transcription elongation factor complex IEP Predict GO terms from Neighborhoods
CC GO:0008024 cyclin/CDK positive transcription elongation factor complex IEP Predict GO terms from Neighborhoods
CC GO:0008180 COP9 signalosome IEP Predict GO terms from Neighborhoods
MF GO:0008353 RNA polymerase II CTD heptapeptide repeat kinase activity IEP Predict GO terms from Neighborhoods
CC GO:0009330 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) complex IEP Predict GO terms from Neighborhoods
BP GO:0009413 response to flooding IEP Predict GO terms from Neighborhoods
BP GO:0010387 COP9 signalosome assembly IEP Predict GO terms from Neighborhoods
BP GO:0010507 negative regulation of autophagy IEP Predict GO terms from Neighborhoods
BP GO:0010971 positive regulation of G2/M transition of mitotic cell cycle IEP Predict GO terms from Neighborhoods
CC GO:0015030 Cajal body IEP Predict GO terms from Neighborhoods
BP GO:0016242 negative regulation of macroautophagy IEP Predict GO terms from Neighborhoods
CC GO:0016604 nuclear body IEP Predict GO terms from Neighborhoods
CC GO:0016607 nuclear speck IEP Predict GO terms from Neighborhoods
MF GO:0016859 cis-trans isomerase activity IEP Predict GO terms from Neighborhoods
MF GO:0017069 snRNA binding IEP Predict GO terms from Neighborhoods
BP GO:0018992 germ-line sex determination IEP Predict GO terms from Neighborhoods
BP GO:0019099 female germ-line sex determination IEP Predict GO terms from Neighborhoods
BP GO:0019336 phenol-containing compound catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0019730 antimicrobial humoral response IEP Predict GO terms from Neighborhoods
BP GO:0019731 antibacterial humoral response IEP Predict GO terms from Neighborhoods
CC GO:0019908 nuclear cyclin-dependent protein kinase holoenzyme complex IEP Predict GO terms from Neighborhoods
BP GO:0022412 cellular process involved in reproduction in multicellular organism IEP Predict GO terms from Neighborhoods
BP GO:0022607 cellular component assembly IEP Predict GO terms from Neighborhoods
BP GO:0022618 ribonucleoprotein complex assembly IEP Predict GO terms from Neighborhoods
BP GO:0030237 female sex determination IEP Predict GO terms from Neighborhoods
MF GO:0030619 U1 snRNA binding IEP Predict GO terms from Neighborhoods
MF GO:0030620 U2 snRNA binding IEP Predict GO terms from Neighborhoods
BP GO:0030718 germ-line stem cell population maintenance IEP Predict GO terms from Neighborhoods
BP GO:0031440 regulation of mRNA 3'-end processing IEP Predict GO terms from Neighborhoods
CC GO:0032806 carboxy-terminal domain protein kinase complex IEP Predict GO terms from Neighborhoods
MF GO:0032977 membrane insertase activity IEP Predict GO terms from Neighborhoods
CC GO:0032991 protein-containing complex IEP Predict GO terms from Neighborhoods
CC GO:0033291 eukaryotic 80S initiation complex IEP Predict GO terms from Neighborhoods
BP GO:0033313 meiotic cell cycle checkpoint signaling IEP Predict GO terms from Neighborhoods
MF GO:0034211 GTP-dependent protein kinase activity IEP Predict GO terms from Neighborhoods
CC GO:0034399 nuclear periphery IEP Predict GO terms from Neighborhoods
BP GO:0034463 90S preribosome assembly IEP Predict GO terms from Neighborhoods
BP GO:0034728 nucleosome organization IEP Predict GO terms from Neighborhoods
BP GO:0035148 tube formation IEP Predict GO terms from Neighborhoods
MF GO:0035613 RNA stem-loop binding IEP Predict GO terms from Neighborhoods
MF GO:0035614 snRNA stem-loop binding IEP Predict GO terms from Neighborhoods
BP GO:0035626 juvenile hormone mediated signaling pathway IEP Predict GO terms from Neighborhoods
CC GO:0035770 ribonucleoprotein granule IEP Predict GO terms from Neighborhoods
BP GO:0036099 female germ-line stem cell population maintenance IEP Predict GO terms from Neighborhoods
CC GO:0036464 cytoplasmic ribonucleoprotein granule IEP Predict GO terms from Neighborhoods
BP GO:0040020 regulation of meiotic nuclear division IEP Predict GO terms from Neighborhoods
BP GO:0042023 DNA endoreduplication IEP Predict GO terms from Neighborhoods
MF GO:0042393 histone binding IEP Predict GO terms from Neighborhoods
CC GO:0042406 extrinsic component of endoplasmic reticulum membrane IEP Predict GO terms from Neighborhoods
BP GO:0042474 middle ear morphogenesis IEP Predict GO terms from Neighborhoods
CC GO:0042719 mitochondrial intermembrane space protein transporter complex IEP Predict GO terms from Neighborhoods
BP GO:0043123 positive regulation of I-kappaB kinase/NF-kappaB signaling IEP Predict GO terms from Neighborhoods
MF GO:0043175 RNA polymerase core enzyme binding IEP Predict GO terms from Neighborhoods
BP GO:0043388 positive regulation of DNA binding IEP Predict GO terms from Neighborhoods
BP GO:0043484 regulation of RNA splicing IEP Predict GO terms from Neighborhoods
BP GO:0043922 negative regulation by host of viral transcription IEP Predict GO terms from Neighborhoods
BP GO:0043933 protein-containing complex organization IEP Predict GO terms from Neighborhoods
BP GO:0043983 histone H4-K12 acetylation IEP Predict GO terms from Neighborhoods
BP GO:0044154 histone H3-K14 acetylation IEP Predict GO terms from Neighborhoods
CC GO:0044391 ribosomal subunit IEP Predict GO terms from Neighborhoods
BP GO:0045039 protein insertion into mitochondrial inner membrane IEP Predict GO terms from Neighborhoods
BP GO:0045048 protein insertion into ER membrane IEP Predict GO terms from Neighborhoods
BP GO:0045050 protein insertion into ER membrane by stop-transfer membrane-anchor sequence IEP Predict GO terms from Neighborhoods
CC GO:0045171 intercellular bridge IEP Predict GO terms from Neighborhoods
MF GO:0045544 gibberellin 20-oxidase activity IEP Predict GO terms from Neighborhoods
BP GO:0045835 negative regulation of meiotic nuclear division IEP Predict GO terms from Neighborhoods
BP GO:0046244 salicylic acid catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0048138 germ-line cyst encapsulation IEP Predict GO terms from Neighborhoods
BP GO:0048140 male germ-line cyst encapsulation IEP Predict GO terms from Neighborhoods
BP GO:0048142 germarium-derived cystoblast division IEP Predict GO terms from Neighborhoods
BP GO:0048318 axial mesoderm development IEP Predict GO terms from Neighborhoods
MF GO:0050780 dopamine receptor binding IEP Predict GO terms from Neighborhoods
BP GO:0050830 defense response to Gram-positive bacterium IEP Predict GO terms from Neighborhoods
BP GO:0050877 nervous system process IEP Predict GO terms from Neighborhoods
BP GO:0050954 sensory perception of mechanical stimulus IEP Predict GO terms from Neighborhoods
BP GO:0051037 regulation of transcription involved in meiotic cell cycle IEP Predict GO terms from Neighborhoods
BP GO:0051039 positive regulation of transcription involved in meiotic cell cycle IEP Predict GO terms from Neighborhoods
BP GO:0051204 protein insertion into mitochondrial membrane IEP Predict GO terms from Neighborhoods
BP GO:0051205 protein insertion into membrane IEP Predict GO terms from Neighborhoods
BP GO:0051447 negative regulation of meiotic cell cycle IEP Predict GO terms from Neighborhoods
BP GO:0051598 meiotic recombination checkpoint signaling IEP Predict GO terms from Neighborhoods
BP GO:0051784 negative regulation of nuclear division IEP Predict GO terms from Neighborhoods
BP GO:0060606 tube closure IEP Predict GO terms from Neighborhoods
BP GO:0061844 antimicrobial humoral immune response mediated by antimicrobial peptide IEP Predict GO terms from Neighborhoods
BP GO:0065003 protein-containing complex assembly IEP Predict GO terms from Neighborhoods
BP GO:0065004 protein-DNA complex assembly IEP Predict GO terms from Neighborhoods
MF GO:0070577 lysine-acetylated histone binding IEP Predict GO terms from Neighborhoods
MF GO:0070594 juvenile hormone response element binding IEP Predict GO terms from Neighborhoods
BP GO:0070868 obsolete heterochromatin organization involved in chromatin silencing IEP Predict GO terms from Neighborhoods
MF GO:0070990 snRNP binding IEP Predict GO terms from Neighborhoods
CC GO:0070992 translation initiation complex IEP Predict GO terms from Neighborhoods
CC GO:0071004 U2-type prespliceosome IEP Predict GO terms from Neighborhoods
CC GO:0071007 U2-type catalytic step 2 spliceosome IEP Predict GO terms from Neighborhoods
CC GO:0071010 prespliceosome IEP Predict GO terms from Neighborhoods
BP GO:0071816 tail-anchored membrane protein insertion into ER membrane IEP Predict GO terms from Neighborhoods
BP GO:0071824 protein-DNA complex subunit organization IEP Predict GO terms from Neighborhoods
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Predict GO terms from Neighborhoods
CC GO:0072546 EMC complex IEP Predict GO terms from Neighborhoods
BP GO:0072657 protein localization to membrane IEP Predict GO terms from Neighborhoods
BP GO:0090150 establishment of protein localization to membrane IEP Predict GO terms from Neighborhoods
BP GO:0090151 establishment of protein localization to mitochondrial membrane IEP Predict GO terms from Neighborhoods
MF GO:0099122 RNA polymerase II C-terminal domain binding IEP Predict GO terms from Neighborhoods
MF GO:0106140 P-TEFb complex binding IEP Predict GO terms from Neighborhoods
MF GO:0140033 acetylation-dependent protein binding IEP Predict GO terms from Neighborhoods
MF GO:0140104 molecular carrier activity IEP Predict GO terms from Neighborhoods
CC GO:0140513 nuclear protein-containing complex IEP Predict GO terms from Neighborhoods
MF GO:0140597 protein carrier chaperone IEP Predict GO terms from Neighborhoods
BP GO:1900363 regulation of mRNA polyadenylation IEP Predict GO terms from Neighborhoods
BP GO:1901407 regulation of phosphorylation of RNA polymerase II C-terminal domain IEP Predict GO terms from Neighborhoods
BP GO:1901976 regulation of cell cycle checkpoint IEP Predict GO terms from Neighborhoods
BP GO:1901977 negative regulation of cell cycle checkpoint IEP Predict GO terms from Neighborhoods
BP GO:1901987 regulation of cell cycle phase transition IEP Predict GO terms from Neighborhoods
BP GO:1902751 positive regulation of cell cycle G2/M phase transition IEP Predict GO terms from Neighborhoods
CC GO:1904813 ficolin-1-rich granule lumen IEP Predict GO terms from Neighborhoods
MF GO:1990446 U1 snRNP binding IEP Predict GO terms from Neighborhoods
CC GO:1990904 ribonucleoprotein complex IEP Predict GO terms from Neighborhoods
BP GO:2000001 regulation of DNA damage checkpoint IEP Predict GO terms from Neighborhoods
BP GO:2000002 negative regulation of DNA damage checkpoint IEP Predict GO terms from Neighborhoods
BP GO:2001253 regulation of histone H3-K36 trimethylation IEP Predict GO terms from Neighborhoods
BP GO:2001255 positive regulation of histone H3-K36 trimethylation IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR019186 Nucleolar_protein_12 23 133
No external refs found!