SOLTUB.AGRIA.G00000034022

Description : Chromo domain protein lhp1

Gene families : OG_02_0023243 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000034022
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_247

Type	GO Term	Name	Evidence	Source
BP	GO:0000278	mitotic cell cycle	IEA	AHRD
CC	GO:0000775	chromosome, centromeric region	None	Extended
CC	GO:0000779	condensed chromosome, centromeric region	IEA	AHRD
CC	GO:0000781	chromosome, telomeric region	IEA	AHRD
CC	GO:0000785	chromatin	None	Extended
CC	GO:0000791	euchromatin	IEA	AHRD
CC	GO:0000792	heterochromatin	None	Extended
MF	GO:0000993	RNA polymerase II complex binding	None	Extended
MF	GO:0001098	basal transcription machinery binding	None	Extended
MF	GO:0001099	basal RNA polymerase II transcription machinery binding	None	Extended
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	AHRD
MF	GO:0003682	chromatin binding	IEA	AHRD
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003729	mRNA binding	IEA	AHRD
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	AHRD
CC	GO:0005701	polytene chromosome chromocenter	IEA	AHRD
CC	GO:0005703	polytene chromosome puff	IEA	AHRD
CC	GO:0005705	polytene chromosome interband	IEA	AHRD
CC	GO:0005721	pericentric heterochromatin	IEA	AHRD
BP	GO:0006355	regulation of DNA-templated transcription	None	Extended
BP	GO:0006357	regulation of transcription by RNA polymerase II	None	Extended
BP	GO:0006479	protein methylation	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0007049	cell cycle	None	Extended
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008213	protein alkylation	None	Extended
BP	GO:0009266	response to temperature stimulus	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009408	response to heat	None	Extended
BP	GO:0009416	response to light stimulus	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009648	photoperiodism	IEA	AHRD
BP	GO:0009791	post-embryonic development	IEA	AHRD
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009891	positive regulation of biosynthetic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
CC	GO:0010369	chromocenter	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
BP	GO:0010638	positive regulation of organelle organization	None	Extended
BP	GO:0016570	histone modification	None	Extended
BP	GO:0016571	histone methylation	None	Extended
BP	GO:0018022	peptidyl-lysine methylation	None	Extended
BP	GO:0018023	peptidyl-lysine trimethylation	None	Extended
BP	GO:0018193	peptidyl-amino acid modification	None	Extended
BP	GO:0018205	peptidyl-lysine modification	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019899	enzyme binding	None	Extended
BP	GO:0022414	reproductive process	None	Extended
MF	GO:0030544	Hsp70 protein binding	IEA	AHRD
MF	GO:0030674	protein-macromolecule adaptor activity	IEA	AHRD
BP	GO:0031056	regulation of histone modification	None	Extended
BP	GO:0031058	positive regulation of histone modification	None	Extended
BP	GO:0031060	regulation of histone methylation	None	Extended
BP	GO:0031062	positive regulation of histone methylation	None	Extended
MF	GO:0031072	heat shock protein binding	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031325	positive regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031328	positive regulation of cellular biosynthetic process	None	Extended
BP	GO:0031334	positive regulation of protein-containing complex assembly	None	Extended
BP	GO:0031399	regulation of protein modification process	None	Extended
BP	GO:0031401	positive regulation of protein modification process	None	Extended
BP	GO:0031445	regulation of heterochromatin formation	None	Extended
BP	GO:0031453	positive regulation of heterochromatin formation	None	Extended
BP	GO:0032259	methylation	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0032879	regulation of localization	None	Extended
BP	GO:0032880	regulation of protein localization	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0033043	regulation of organelle organization	None	Extended
BP	GO:0033044	regulation of chromosome organization	None	Extended
BP	GO:0033365	protein localization to organelle	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0033697	obsolete positive regulation of extent of heterochromatin assembly	IEA	AHRD
BP	GO:0034502	protein localization to chromosome	None	Extended
BP	GO:0034605	cellular response to heat	None	Extended
BP	GO:0034770	histone H4-K20 methylation	None	Extended
BP	GO:0034773	histone H4-K20 trimethylation	IEA	AHRD
BP	GO:0034968	histone lysine methylation	None	Extended
MF	GO:0035064	methylated histone binding	IEA	AHRD
BP	GO:0036003	positive regulation of transcription from RNA polymerase II promoter in response to stress	None	Extended
BP	GO:0036211	protein modification process	None	Extended
MF	GO:0042393	histone binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
MF	GO:0043175	RNA polymerase core enzyme binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043254	regulation of protein-containing complex assembly	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043414	macromolecule methylation	None	Extended
BP	GO:0043618	regulation of transcription from RNA polymerase II promoter in response to stress	None	Extended
BP	GO:0043620	regulation of DNA-templated transcription in response to stress	None	Extended
BP	GO:0044087	regulation of cellular component biogenesis	None	Extended
BP	GO:0044089	positive regulation of cellular component biogenesis	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
MF	GO:0044877	protein-containing complex binding	IEA	AHRD
BP	GO:0045893	positive regulation of DNA-templated transcription	None	Extended
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0045944	positive regulation of transcription by RNA polymerase II	None	Extended
BP	GO:0048367	shoot system development	IEA	AHRD
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0048608	reproductive structure development	IEA	AHRD
BP	GO:0048731	system development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051128	regulation of cellular component organization	None	Extended
BP	GO:0051130	positive regulation of cellular component organization	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051246	regulation of protein metabolic process	None	Extended
BP	GO:0051247	positive regulation of protein metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051254	positive regulation of RNA metabolic process	None	Extended
BP	GO:0051570	regulation of histone H3-K9 methylation	None	Extended
BP	GO:0051574	positive regulation of histone H3-K9 methylation	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
MF	GO:0060090	molecular adaptor activity	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0060341	regulation of cellular localization	None	Extended
BP	GO:0061408	positive regulation of transcription from RNA polymerase II promoter in response to heat stress	IEA	AHRD
BP	GO:0065007	biological regulation	None	Extended
MF	GO:0070063	RNA polymerase binding	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0070868	obsolete heterochromatin organization involved in chromatin silencing	IEA	AHRD
BP	GO:0071168	protein localization to chromatin	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090308	regulation of DNA methylation-dependent heterochromatin formation	None	Extended
BP	GO:0090309	positive regulation of DNA methylation-dependent heterochromatin formation	IEA	AHRD
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0098687	chromosomal region	None	Extended
MF	GO:0099122	RNA polymerase II C-terminal domain binding	IEA	AHRD
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:0120261	regulation of heterochromatin organization	None	Extended
BP	GO:0120263	positive regulation of heterochromatin organization	None	Extended
MF	GO:0140030	modification-dependent protein binding	None	Extended
MF	GO:0140034	methylation-dependent protein binding	None	Extended
BP	GO:1900109	regulation of histone H3-K9 dimethylation	None	Extended
BP	GO:1900111	positive regulation of histone H3-K9 dimethylation	IEA	AHRD
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1902275	regulation of chromatin organization	None	Extended
BP	GO:1902680	positive regulation of RNA biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1905269	positive regulation of chromatin organization	None	Extended
BP	GO:1905632	protein localization to euchromatin	IEA	AHRD
BP	GO:1905634	regulation of protein localization to chromatin	IEA	AHRD
BP	GO:1905644	regulation of FACT complex assembly	None	Extended
BP	GO:1905646	positive regulation of FACT complex assembly	IEA	AHRD
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended
BP	GO:2001252	positive regulation of chromosome organization	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000120	RNA polymerase I transcription regulator complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0000500	RNA polymerase I upstream activating factor complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0001163	RNA polymerase I transcription regulatory region sequence-specific DNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0001165	RNA polymerase I cis-regulatory region sequence-specific DNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0001181	RNA polymerase I general transcription initiation factor activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0002791	regulation of peptide secretion	IEP	Predict GO terms from Neighborhoods
BP	GO:0002792	negative regulation of peptide secretion	IEP	Predict GO terms from Neighborhoods
MF	GO:0004057	arginyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004439	phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004722	protein serine/threonine phosphatase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005652	nuclear lamina	IEP	Predict GO terms from Neighborhoods
BP	GO:0006352	DNA-templated transcription initiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006360	transcription by RNA polymerase I	IEP	Predict GO terms from Neighborhoods
BP	GO:0006361	transcription initiation at RNA polymerase I promoter	IEP	Predict GO terms from Neighborhoods
BP	GO:0006655	phosphatidylglycerol biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0007155	cell adhesion	IEP	Predict GO terms from Neighborhoods
BP	GO:0007568	aging	IEP	Predict GO terms from Neighborhoods
MF	GO:0008138	protein tyrosine/serine/threonine phosphatase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008962	phosphatidylglycerophosphatase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009303	rRNA transcription	IEP	Predict GO terms from Neighborhoods
CC	GO:0016363	nuclear matrix	IEP	Predict GO terms from Neighborhoods
BP	GO:0016598	protein arginylation	IEP	Predict GO terms from Neighborhoods
MF	GO:0016755	aminoacyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016788	hydrolase activity, acting on ester bonds	IEP	Predict GO terms from Neighborhoods
CC	GO:0031143	pseudopodium	IEP	Predict GO terms from Neighborhoods
CC	GO:0031304	intrinsic component of mitochondrial inner membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0031305	integral component of mitochondrial inner membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0031589	cell-substrate adhesion	IEP	Predict GO terms from Neighborhoods
CC	GO:0032592	integral component of mitochondrial membrane	IEP	Predict GO terms from Neighborhoods
MF	GO:0034593	phosphatidylinositol bisphosphate phosphatase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0034595	phosphatidylinositol phosphate 5-phosphatase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0035002	liquid clearance, open tracheal system	IEP	Predict GO terms from Neighborhoods
BP	GO:0042044	fluid transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0042045	epithelial fluid transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0042790	nucleolar large rRNA transcription by RNA polymerase I	IEP	Predict GO terms from Neighborhoods
BP	GO:0043578	nuclear matrix organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0046471	phosphatidylglycerol metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046474	glycerophospholipid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046676	negative regulation of insulin secretion	IEP	Predict GO terms from Neighborhoods
BP	GO:0046883	regulation of hormone secretion	IEP	Predict GO terms from Neighborhoods
BP	GO:0046888	negative regulation of hormone secretion	IEP	Predict GO terms from Neighborhoods
BP	GO:0050708	regulation of protein secretion	IEP	Predict GO terms from Neighborhoods
BP	GO:0050709	negative regulation of protein secretion	IEP	Predict GO terms from Neighborhoods
BP	GO:0050796	regulation of insulin secretion	IEP	Predict GO terms from Neighborhoods
BP	GO:0050994	regulation of lipid catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051048	negative regulation of secretion	IEP	Predict GO terms from Neighborhoods
BP	GO:0051224	negative regulation of protein transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0052689	carboxylic ester hydrolase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0052866	phosphatidylinositol phosphate phosphatase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0061178	regulation of insulin secretion involved in cellular response to glucose stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0061179	negative regulation of insulin secretion involved in cellular response to glucose stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0070633	transepithelial transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0071596	ubiquitin-dependent protein catabolic process via the N-end rule pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0090087	regulation of peptide transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0090276	regulation of peptide hormone secretion	IEP	Predict GO terms from Neighborhoods
BP	GO:0090278	negative regulation of peptide hormone secretion	IEP	Predict GO terms from Neighborhoods
BP	GO:0097298	regulation of nucleus size	IEP	Predict GO terms from Neighborhoods
CC	GO:0098573	intrinsic component of mitochondrial membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0098781	ncRNA transcription	IEP	Predict GO terms from Neighborhoods
MF	GO:0106019	phosphatidylinositol-4,5-bisphosphate phosphatase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0140223	general transcription initiation factor activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1903531	negative regulation of secretion by cell	IEP	Predict GO terms from Neighborhoods
BP	GO:1903828	negative regulation of protein localization	IEP	Predict GO terms from Neighborhoods
BP	GO:1904950	negative regulation of establishment of protein localization	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR023780	Chromo_domain	107	144
IPR016197	Chromo-like_dom_sf	46	151

External Links

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SOLTUB.AGRIA.G00000034022

Expression Profile

Co-expression Networks

Functional Annotation