SOLTUB.AGRIA.G00000035412

Description : Polyubiquitin

Gene families : OG_02_0000308 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000035412
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_119

Type	GO Term	Name	Evidence	Source
MF	GO:0002020	protease binding	IEA	AHRD
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	AHRD
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005654	nucleoplasm	IEA	AHRD
CC	GO:0005886	plasma membrane	IEA	AHRD
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEA	AHRD
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006914	autophagy	IEA	AHRD
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008219	cell death	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010623	programmed cell death involved in cell development	None	Extended
BP	GO:0012501	programmed cell death	None	Extended
CC	GO:0015935	small ribosomal subunit	None	Extended
CC	GO:0016020	membrane	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	AHRD
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019899	enzyme binding	None	Extended
BP	GO:0019941	modification-dependent protein catabolic process	None	Extended
CC	GO:0022627	cytosolic small ribosomal subunit	IEA	AHRD
MF	GO:0031386	protein tag	IEA	AHRD
MF	GO:0031625	ubiquitin protein ligase binding	IEA	AHRD
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0032502	developmental process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0035096	larval midgut cell programmed cell death	IEA	AHRD
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
MF	GO:0044389	ubiquitin-like protein ligase binding	None	Extended
CC	GO:0044391	ribosomal subunit	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0051603	proteolysis involved in protein catabolic process	None	Extended
BP	GO:0061919	process utilizing autophagic mechanism	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000977	RNA polymerase II transcription regulatory region sequence-specific DNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0000987	cis-regulatory region sequence-specific DNA binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0001405	PAM complex, Tim23 associated import motor	IEP	Predict GO terms from Neighborhoods
MF	GO:0001671	ATPase activator activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0001822	kidney development	IEP	Predict GO terms from Neighborhoods
BP	GO:0002082	regulation of oxidative phosphorylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006839	mitochondrial transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0007600	sensory perception	IEP	Predict GO terms from Neighborhoods
BP	GO:0007601	visual perception	IEP	Predict GO terms from Neighborhoods
BP	GO:0008356	asymmetric cell division	IEP	Predict GO terms from Neighborhoods
BP	GO:0009892	negative regulation of metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0030150	protein import into mitochondrial matrix	IEP	Predict GO terms from Neighborhoods
BP	GO:0031324	negative regulation of cellular metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0033554	cellular response to stress	IEP	Predict GO terms from Neighborhoods
BP	GO:0034605	cellular response to heat	IEP	Predict GO terms from Neighborhoods
BP	GO:0043457	regulation of cellular respiration	IEP	Predict GO terms from Neighborhoods
BP	GO:0043467	regulation of generation of precursor metabolites and energy	IEP	Predict GO terms from Neighborhoods
BP	GO:0044743	protein transmembrane import into intracellular organelle	IEP	Predict GO terms from Neighborhoods
BP	GO:0048523	negative regulation of cellular process	IEP	Predict GO terms from Neighborhoods
BP	GO:0048793	pronephros development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048806	genitalia development	IEP	Predict GO terms from Neighborhoods
BP	GO:0050877	nervous system process	IEP	Predict GO terms from Neighborhoods
BP	GO:0050953	sensory perception of light stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0065002	intracellular protein transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0070585	protein localization to mitochondrion	IEP	Predict GO terms from Neighborhoods
BP	GO:0071806	protein transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0072594	establishment of protein localization to organelle	IEP	Predict GO terms from Neighborhoods
BP	GO:0072655	establishment of protein localization to mitochondrion	IEP	Predict GO terms from Neighborhoods
BP	GO:0090324	negative regulation of oxidative phosphorylation	IEP	Predict GO terms from Neighborhoods
CC	GO:0098798	mitochondrial protein-containing complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0098800	inner mitochondrial membrane protein complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0140677	molecular function activator activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1900208	regulation of cardiolipin metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901856	negative regulation of cellular respiration	IEP	Predict GO terms from Neighborhoods
BP	GO:1902956	regulation of mitochondrial electron transport, NADH to ubiquinone	IEP	Predict GO terms from Neighborhoods
BP	GO:1902957	negative regulation of mitochondrial electron transport, NADH to ubiquinone	IEP	Predict GO terms from Neighborhoods
BP	GO:1903715	regulation of aerobic respiration	IEP	Predict GO terms from Neighborhoods
BP	GO:1903725	regulation of phospholipid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1905446	regulation of mitochondrial ATP synthesis coupled electron transport	IEP	Predict GO terms from Neighborhoods
BP	GO:1905447	negative regulation of mitochondrial ATP synthesis coupled electron transport	IEP	Predict GO terms from Neighborhoods
BP	GO:1990542	mitochondrial transmembrane transport	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR029071	Ubiquitin-like_domsf	304	380
IPR029071	Ubiquitin-like_domsf	380	456
IPR000626	Ubiquitin-like_dom	383	454
IPR000626	Ubiquitin-like_dom	231	302
IPR000626	Ubiquitin-like_dom	79	150
IPR000626	Ubiquitin-like_dom	459	530
IPR000626	Ubiquitin-like_dom	307	378
IPR000626	Ubiquitin-like_dom	155	226
IPR000626	Ubiquitin-like_dom	3	74
IPR029071	Ubiquitin-like_domsf	76	152
IPR029071	Ubiquitin-like_domsf	228	304
IPR029071	Ubiquitin-like_domsf	1	76
IPR029071	Ubiquitin-like_domsf	456	532
IPR029071	Ubiquitin-like_domsf	152	228

External Links

No external refs found!

SOLTUB.AGRIA.G00000035412

Expression Profile

Co-expression Networks

Functional Annotation