SOLTUB.AGRIA.G00000035628

Description : Glycine-rich RNA-binding protein, putative

Gene families : OG_02_0005044 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000035628
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_260

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
BP	GO:0000959	mitochondrial RNA metabolic process	None	Extended
BP	GO:0001101	response to acid chemical	None	Extended
BP	GO:0001822	kidney development	None	Extended
BP	GO:0002376	immune system process	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003690	double-stranded DNA binding	IEA	AHRD
MF	GO:0003697	single-stranded DNA binding	IEA	AHRD
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003729	mRNA binding	None	Extended
MF	GO:0003730	mRNA 3'-UTR binding	IEA	AHRD
MF	GO:0005488	binding	None	Extended
MF	GO:0005507	copper ion binding	IEA	AHRD
MF	GO:0005515	protein binding	None	Extended
MF	GO:0005524	ATP binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005681	spliceosomal complex	IEA	AHRD
CC	GO:0005739	mitochondrion	IEA	AHRD
CC	GO:0005911	cell-cell junction	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006417	regulation of translation	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006952	defense response	None	Extended
BP	GO:0006955	immune response	None	Extended
BP	GO:0007275	multicellular organism development	None	Extended
BP	GO:0007369	gastrulation	IEA	AHRD
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009266	response to temperature stimulus	None	Extended
BP	GO:0009409	response to cold	IEA	AHRD
BP	GO:0009414	response to water deprivation	IEA	AHRD
BP	GO:0009415	response to water	None	Extended
BP	GO:0009451	RNA modification	None	Extended
CC	GO:0009506	plasmodesma	IEA	AHRD
CC	GO:0009526	plastid envelope	None	Extended
CC	GO:0009532	plastid stroma	None	Extended
CC	GO:0009535	chloroplast thylakoid membrane	IEA	AHRD
CC	GO:0009570	chloroplast stroma	IEA	AHRD
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	None	Extended
BP	GO:0009737	response to abscisic acid	IEA	AHRD
BP	GO:0009790	embryo development	None	Extended
BP	GO:0009792	embryo development ending in birth or egg hatching	IEA	AHRD
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009891	positive regulation of biosynthetic process	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0009894	regulation of catabolic process	None	Extended
BP	GO:0009895	negative regulation of catabolic process	None	Extended
CC	GO:0009941	chloroplast envelope	IEA	AHRD
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010035	response to inorganic substance	None	Extended
CC	GO:0010319	stromule	IEA	AHRD
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010608	post-transcriptional regulation of gene expression	None	Extended
BP	GO:0010628	positive regulation of gene expression	None	Extended
CC	GO:0016020	membrane	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0016477	cell migration	IEA	AHRD
BP	GO:0016553	base conversion or substitution editing	None	Extended
BP	GO:0016554	cytidine to uridine editing	IEA	AHRD
BP	GO:0016556	mRNA modification	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
MF	GO:0019899	enzyme binding	IEA	AHRD
BP	GO:0022008	neurogenesis	IEA	AHRD
CC	GO:0030054	cell junction	None	Extended
BP	GO:0030154	cell differentiation	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
CC	GO:0031090	organelle membrane	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031324	negative regulation of cellular metabolic process	None	Extended
BP	GO:0031325	positive regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031328	positive regulation of cellular biosynthetic process	None	Extended
BP	GO:0031329	regulation of cellular catabolic process	None	Extended
BP	GO:0031330	negative regulation of cellular catabolic process	None	Extended
CC	GO:0031967	organelle envelope	None	Extended
CC	GO:0031975	envelope	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033120	positive regulation of RNA splicing	None	Extended
BP	GO:0033993	response to lipid	None	Extended
BP	GO:0034248	regulation of cellular amide metabolic process	None	Extended
BP	GO:0034250	positive regulation of cellular amide metabolic process	None	Extended
CC	GO:0034357	photosynthetic membrane	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
CC	GO:0042170	plastid membrane	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0042651	thylakoid membrane	None	Extended
MF	GO:0043021	ribonucleoprotein complex binding	None	Extended
MF	GO:0043022	ribosome binding	IEA	AHRD
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043484	regulation of RNA splicing	None	Extended
BP	GO:0043487	regulation of RNA stability	None	Extended
BP	GO:0043488	regulation of mRNA stability	None	Extended
BP	GO:0043489	RNA stabilization	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
MF	GO:0044877	protein-containing complex binding	None	Extended
BP	GO:0045087	innate immune response	IEA	AHRD
BP	GO:0045727	positive regulation of translation	None	Extended
BP	GO:0045934	negative regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0047484	regulation of response to osmotic stress	None	Extended
BP	GO:0048024	regulation of mRNA splicing, via spliceosome	None	Extended
BP	GO:0048026	positive regulation of mRNA splicing, via spliceosome	IEA	AHRD
BP	GO:0048255	mRNA stabilization	IEA	AHRD
BP	GO:0048513	animal organ development	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0048583	regulation of response to stimulus	None	Extended
BP	GO:0048584	positive regulation of response to stimulus	None	Extended
BP	GO:0048598	embryonic morphogenesis	None	Extended
BP	GO:0048793	pronephros development	IEA	AHRD
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0048870	cell motility	None	Extended
BP	GO:0050684	regulation of mRNA processing	None	Extended
BP	GO:0050685	positive regulation of mRNA processing	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051172	negative regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051246	regulation of protein metabolic process	None	Extended
BP	GO:0051247	positive regulation of protein metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051253	negative regulation of RNA metabolic process	None	Extended
BP	GO:0051254	positive regulation of RNA metabolic process	None	Extended
BP	GO:0051707	response to other organism	None	Extended
CC	GO:0055035	plastid thylakoid membrane	None	Extended
BP	GO:0060211	regulation of nuclear-transcribed mRNA poly(A) tail shortening	None	Extended
BP	GO:0060212	negative regulation of nuclear-transcribed mRNA poly(A) tail shortening	IEA	AHRD
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0061013	regulation of mRNA catabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065008	regulation of biological quality	None	Extended
CC	GO:0070161	anchoring junction	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0080134	regulation of response to stress	None	Extended
BP	GO:0080156	mitochondrial mRNA modification	IEA	AHRD
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097305	response to alcohol	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
BP	GO:0098542	defense response to other organism	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
BP	GO:1900151	regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay	None	Extended
BP	GO:1900152	negative regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay	None	Extended
BP	GO:1900864	mitochondrial RNA modification	None	Extended
BP	GO:1901000	regulation of response to salt stress	None	Extended
BP	GO:1901002	positive regulation of response to salt stress	IEA	AHRD
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended
BP	GO:1902369	negative regulation of RNA catabolic process	None	Extended
BP	GO:1902373	negative regulation of mRNA catabolic process	None	Extended
BP	GO:1903311	regulation of mRNA metabolic process	None	Extended
BP	GO:1903312	negative regulation of mRNA metabolic process	None	Extended
BP	GO:1903313	positive regulation of mRNA metabolic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR035979	RBD_domain_sf	40	149
IPR000504	RRM_dom	42	112

External Links

No external refs found!

SOLTUB.AGRIA.G00000035628

Expression Profile

Co-expression Networks

Functional Annotation