SOLTUB.AGRIA.G00000035673

Description : Polypyrimidine tract-binding-like protein

Gene families : OG_02_0002293 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000035673
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_260

Type	GO Term	Name	Evidence	Source
MF	GO:0000014	single-stranded DNA endodeoxyribonuclease activity	IEA	AHRD
BP	GO:0000381	regulation of alternative mRNA splicing, via spliceosome	IEA	AHRD
CC	GO:0000932	P-body	IEA	AHRD
BP	GO:0000956	nuclear-transcribed mRNA catabolic process	IEA	AHRD
MF	GO:0001067	transcription regulatory region nucleic acid binding	None	Extended
MF	GO:0001069	regulatory region RNA binding	IEA	AHRD
BP	GO:0002791	regulation of peptide secretion	None	Extended
BP	GO:0002793	positive regulation of peptide secretion	None	Extended
BP	GO:0003205	cardiac chamber development	None	Extended
BP	GO:0003231	cardiac ventricle development	IEA	AHRD
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003697	single-stranded DNA binding	IEA	AHRD
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003729	mRNA binding	IEA	AHRD
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004518	nuclease activity	None	Extended
MF	GO:0004519	endonuclease activity	None	Extended
MF	GO:0004520	endodeoxyribonuclease activity	None	Extended
MF	GO:0004536	deoxyribonuclease activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005681	spliceosomal complex	IEA	AHRD
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	None	Extended
BP	GO:0006357	regulation of transcription by RNA polymerase II	None	Extended
BP	GO:0006376	mRNA splice site selection	IEA	AHRD
BP	GO:0006401	RNA catabolic process	None	Extended
BP	GO:0006402	mRNA catabolic process	None	Extended
BP	GO:0006417	regulation of translation	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009845	seed germination	IEA	AHRD
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009891	positive regulation of biosynthetic process	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0009894	regulation of catabolic process	None	Extended
BP	GO:0009895	negative regulation of catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010562	positive regulation of phosphorus metabolic process	None	Extended
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010608	post-transcriptional regulation of gene expression	None	Extended
BP	GO:0010628	positive regulation of gene expression	None	Extended
BP	GO:0010629	negative regulation of gene expression	None	Extended
BP	GO:0010638	positive regulation of organelle organization	None	Extended
BP	GO:0010646	regulation of cell communication	None	Extended
BP	GO:0010647	positive regulation of cell communication	None	Extended
BP	GO:0010817	regulation of hormone levels	None	Extended
BP	GO:0010975	regulation of neuron projection development	None	Extended
BP	GO:0010976	positive regulation of neuron projection development	IEA	AHRD
BP	GO:0016032	viral process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019220	regulation of phosphate metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019439	aromatic compound catabolic process	None	Extended
BP	GO:0021510	spinal cord development	IEA	AHRD
BP	GO:0021549	cerebellum development	IEA	AHRD
BP	GO:0022607	cellular component assembly	None	Extended
BP	GO:0022618	ribonucleoprotein complex assembly	None	Extended
BP	GO:0023051	regulation of signaling	None	Extended
BP	GO:0023056	positive regulation of signaling	None	Extended
CC	GO:0030426	growth cone	IEA	AHRD
CC	GO:0030427	site of polarized growth	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031324	negative regulation of cellular metabolic process	None	Extended
BP	GO:0031325	positive regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031328	positive regulation of cellular biosynthetic process	None	Extended
BP	GO:0031329	regulation of cellular catabolic process	None	Extended
BP	GO:0031330	negative regulation of cellular catabolic process	None	Extended
BP	GO:0031344	regulation of cell projection organization	None	Extended
BP	GO:0031346	positive regulation of cell projection organization	None	Extended
BP	GO:0031399	regulation of protein modification process	None	Extended
BP	GO:0031401	positive regulation of protein modification process	None	Extended
BP	GO:0032024	positive regulation of insulin secretion	IEA	AHRD
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0032879	regulation of localization	None	Extended
BP	GO:0032880	regulation of protein localization	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033043	regulation of organelle organization	None	Extended
BP	GO:0033119	negative regulation of RNA splicing	None	Extended
BP	GO:0034248	regulation of cellular amide metabolic process	None	Extended
BP	GO:0034250	positive regulation of cellular amide metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034655	nucleobase-containing compound catabolic process	None	Extended
BP	GO:0035303	regulation of dephosphorylation	None	Extended
BP	GO:0035304	regulation of protein dephosphorylation	None	Extended
BP	GO:0035306	positive regulation of dephosphorylation	None	Extended
BP	GO:0035307	positive regulation of protein dephosphorylation	IEA	AHRD
CC	GO:0035770	ribonucleoprotein granule	None	Extended
CC	GO:0036464	cytoplasmic ribonucleoprotein granule	None	Extended
BP	GO:0042127	regulation of cell population proliferation	None	Extended
CC	GO:0043025	neuronal cell body	IEA	AHRD
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043484	regulation of RNA splicing	None	Extended
BP	GO:0043487	regulation of RNA stability	None	Extended
BP	GO:0043488	regulation of mRNA stability	None	Extended
BP	GO:0043489	RNA stabilization	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	AHRD
BP	GO:0043933	protein-containing complex organization	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0044270	cellular nitrogen compound catabolic process	None	Extended
CC	GO:0044297	cell body	None	Extended
CC	GO:0044306	neuron projection terminus	IEA	AHRD
BP	GO:0045595	regulation of cell differentiation	None	Extended
BP	GO:0045596	negative regulation of cell differentiation	None	Extended
BP	GO:0045664	regulation of neuron differentiation	None	Extended
BP	GO:0045665	negative regulation of neuron differentiation	IEA	AHRD
BP	GO:0045727	positive regulation of translation	IEA	AHRD
BP	GO:0045893	positive regulation of DNA-templated transcription	None	Extended
BP	GO:0045934	negative regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0045937	positive regulation of phosphate metabolic process	None	Extended
BP	GO:0045944	positive regulation of transcription by RNA polymerase II	IEA	AHRD
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0046700	heterocycle catabolic process	None	Extended
BP	GO:0046883	regulation of hormone secretion	None	Extended
BP	GO:0046887	positive regulation of hormone secretion	None	Extended
BP	GO:0048024	regulation of mRNA splicing, via spliceosome	None	Extended
BP	GO:0048025	negative regulation of mRNA splicing, via spliceosome	IEA	AHRD
BP	GO:0048255	mRNA stabilization	None	Extended
BP	GO:0048513	animal organ development	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050684	regulation of mRNA processing	None	Extended
BP	GO:0050686	negative regulation of mRNA processing	None	Extended
BP	GO:0050708	regulation of protein secretion	None	Extended
BP	GO:0050714	positive regulation of protein secretion	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050796	regulation of insulin secretion	None	Extended
BP	GO:0051046	regulation of secretion	None	Extended
BP	GO:0051047	positive regulation of secretion	None	Extended
BP	GO:0051049	regulation of transport	None	Extended
BP	GO:0051050	positive regulation of transport	None	Extended
BP	GO:0051093	negative regulation of developmental process	None	Extended
BP	GO:0051128	regulation of cellular component organization	None	Extended
BP	GO:0051130	positive regulation of cellular component organization	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051172	negative regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051174	regulation of phosphorus metabolic process	None	Extended
BP	GO:0051222	positive regulation of protein transport	None	Extended
BP	GO:0051223	regulation of protein transport	None	Extended
BP	GO:0051246	regulation of protein metabolic process	None	Extended
BP	GO:0051247	positive regulation of protein metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051253	negative regulation of RNA metabolic process	None	Extended
BP	GO:0051254	positive regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0060341	regulation of cellular localization	None	Extended
BP	GO:0061013	regulation of mRNA catabolic process	None	Extended
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065008	regulation of biological quality	None	Extended
BP	GO:0070201	regulation of establishment of protein localization	None	Extended
BP	GO:0070935	3'-UTR-mediated mRNA stabilization	IEA	AHRD
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071826	ribonucleoprotein complex subunit organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0075522	IRES-dependent viral translational initiation	IEA	AHRD
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090087	regulation of peptide transport	None	Extended
BP	GO:0090276	regulation of peptide hormone secretion	None	Extended
BP	GO:0090277	positive regulation of peptide hormone secretion	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0099080	supramolecular complex	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:0120035	regulation of plasma membrane bounded cell projection organization	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901361	organic cyclic compound catabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
BP	GO:1902369	negative regulation of RNA catabolic process	None	Extended
BP	GO:1902373	negative regulation of mRNA catabolic process	None	Extended
BP	GO:1902680	positive regulation of RNA biosynthetic process	None	Extended
BP	GO:1903311	regulation of mRNA metabolic process	None	Extended
BP	GO:1903312	negative regulation of mRNA metabolic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1903530	regulation of secretion by cell	None	Extended
BP	GO:1903532	positive regulation of secretion by cell	None	Extended
BP	GO:1903829	positive regulation of protein localization	None	Extended
BP	GO:1904409	regulation of secretory granule organization	None	Extended
BP	GO:1904411	positive regulation of secretory granule organization	IEA	AHRD
BP	GO:1904951	positive regulation of establishment of protein localization	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2000177	regulation of neural precursor cell proliferation	IEA	AHRD
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0002229	defense response to oomycetes	IEP	Predict GO terms from Neighborhoods
BP	GO:0002239	response to oomycetes	IEP	Predict GO terms from Neighborhoods
MF	GO:0004497	monooxygenase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009696	salicylic acid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009804	coumarin metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009805	coumarin biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009812	flavonoid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009813	flavonoid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009820	alkaloid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009821	alkaloid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010150	leaf senescence	IEP	Predict GO terms from Neighborhoods
BP	GO:0010421	hydrogen peroxide-mediated programmed cell death	IEP	Predict GO terms from Neighborhoods
BP	GO:0012501	programmed cell death	IEP	Predict GO terms from Neighborhoods
BP	GO:0016054	organic acid catabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0016706	2-oxoglutarate-dependent dioxygenase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016709	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	IEP	Predict GO terms from Neighborhoods
BP	GO:0018958	phenol-containing compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019336	phenol-containing compound catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0033075	isoquinoline alkaloid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0033076	isoquinoline alkaloid metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0033759	flavone synthase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0034785	salicylate 5-hydroxylase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0036473	cell death in response to oxidative stress	IEP	Predict GO terms from Neighborhoods
BP	GO:0036474	cell death in response to hydrogen peroxide	IEP	Predict GO terms from Neighborhoods
BP	GO:0042440	pigment metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042537	benzene-containing compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042594	response to starvation	IEP	Predict GO terms from Neighborhoods
BP	GO:0044282	small molecule catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046148	pigment biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046244	salicylic acid catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046395	carboxylic acid catabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0051213	dioxygenase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0071272	morphine metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0072329	monocarboxylic acid catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0090693	plant organ senescence	IEP	Predict GO terms from Neighborhoods
BP	GO:0097295	morphine biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0097468	programmed cell death in response to reactive oxygen species	IEP	Predict GO terms from Neighborhoods
MF	GO:0102802	thebaine 6-O-demethylase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0102805	codeine O-demethylase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1901376	organic heteropentacyclic compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901378	organic heteropentacyclic compound biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901616	organic hydroxy compound catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901617	organic hydroxy compound biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1990641	response to iron ion starvation	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR035979	RBD_domain_sf	209	394
IPR021790	PTBP1-like_RRM2	30	66
IPR035979	RBD_domain_sf	25	89
IPR000504	RRM_dom	324	387

External Links

No external refs found!

SOLTUB.AGRIA.G00000035673

Expression Profile

Co-expression Networks

Functional Annotation