SOLTUB.AGRIA.G00000035882

Description : Squalene synthase

Gene families : OG_02_0003143 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000035882
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_136

Type	GO Term	Name	Evidence	Source
BP	GO:0000302	response to reactive oxygen species	None	Extended
BP	GO:0002238	response to molecule of fungal origin	IEA	AHRD
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004310	farnesyl-diphosphate farnesyltransferase activity	IEA	AHRD
MF	GO:0004311	farnesyltranstransferase activity	None	Extended
MF	GO:0004659	prenyltransferase activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005789	endoplasmic reticulum membrane	IEA	AHRD
CC	GO:0005886	plasma membrane	IEA	AHRD
BP	GO:0006066	alcohol metabolic process	None	Extended
BP	GO:0006629	lipid metabolic process	None	Extended
BP	GO:0006644	phospholipid metabolic process	None	Extended
BP	GO:0006694	steroid biosynthetic process	None	Extended
BP	GO:0006695	cholesterol biosynthetic process	IEA	AHRD
BP	GO:0006720	isoprenoid metabolic process	None	Extended
BP	GO:0006721	terpenoid metabolic process	None	Extended
BP	GO:0006722	triterpenoid metabolic process	None	Extended
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006979	response to oxidative stress	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008202	steroid metabolic process	None	Extended
BP	GO:0008203	cholesterol metabolic process	None	Extended
BP	GO:0008299	isoprenoid biosynthetic process	None	Extended
BP	GO:0008610	lipid biosynthetic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009723	response to ethylene	IEA	AHRD
BP	GO:0009725	response to hormone	None	Extended
BP	GO:0009751	response to salicylic acid	IEA	AHRD
BP	GO:0009753	response to jasmonic acid	IEA	AHRD
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010035	response to inorganic substance	None	Extended
BP	GO:0014070	response to organic cyclic compound	None	Extended
CC	GO:0016020	membrane	None	Extended
CC	GO:0016021	integral component of membrane	IEA	AHRD
BP	GO:0016104	triterpenoid biosynthetic process	IEA	AHRD
BP	GO:0016114	terpenoid biosynthetic process	None	Extended
BP	GO:0016125	sterol metabolic process	None	Extended
BP	GO:0016126	sterol biosynthetic process	None	Extended
BP	GO:0016134	saponin metabolic process	None	Extended
BP	GO:0016135	saponin biosynthetic process	IEA	AHRD
BP	GO:0016137	glycoside metabolic process	None	Extended
BP	GO:0016138	glycoside biosynthetic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups	None	Extended
BP	GO:0019637	organophosphate metabolic process	None	Extended
CC	GO:0031090	organelle membrane	None	Extended
CC	GO:0031224	intrinsic component of membrane	None	Extended
BP	GO:0033993	response to lipid	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0042542	response to hydrogen peroxide	IEA	AHRD
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044255	cellular lipid metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044283	small molecule biosynthetic process	None	Extended
BP	GO:0045338	farnesyl diphosphate metabolic process	IEA	AHRD
BP	GO:0046165	alcohol biosynthetic process	None	Extended
MF	GO:0046872	metal ion binding	IEA	AHRD
BP	GO:0050896	response to stimulus	None	Extended
MF	GO:0051996	squalene synthase activity	IEA	AHRD
BP	GO:0070542	response to fatty acid	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071731	response to nitric oxide	IEA	AHRD
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901135	carbohydrate derivative metabolic process	None	Extended
BP	GO:1901137	carbohydrate derivative biosynthetic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1901615	organic hydroxy compound metabolic process	None	Extended
BP	GO:1901617	organic hydroxy compound biosynthetic process	None	Extended
BP	GO:1901657	glycosyl compound metabolic process	None	Extended
BP	GO:1901659	glycosyl compound biosynthetic process	None	Extended
BP	GO:1901698	response to nitrogen compound	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended
BP	GO:1902438	response to vanadate(3-)	IEA	AHRD
BP	GO:1902652	secondary alcohol metabolic process	None	Extended
BP	GO:1902653	secondary alcohol biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000326	protein storage vacuole	IEP	Predict GO terms from Neighborhoods
MF	GO:0002094	polyprenyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0002253	activation of immune response	IEP	Predict GO terms from Neighborhoods
BP	GO:0002684	positive regulation of immune system process	IEP	Predict GO terms from Neighborhoods
MF	GO:0004338	glucan exo-1,3-beta-glucosidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004497	monooxygenase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004565	beta-galactosidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004723	calcium-dependent protein serine/threonine phosphatase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0005513	detection of calcium ion	IEP	Predict GO terms from Neighborhoods
CC	GO:0005783	endoplasmic reticulum	IEP	Predict GO terms from Neighborhoods
CC	GO:0005955	calcineurin complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0006971	hypotonic response	IEP	Predict GO terms from Neighborhoods
MF	GO:0008395	steroid hydroxylase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009561	megagametogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0009699	phenylpropanoid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009714	chalcone metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009715	chalcone biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009812	flavonoid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009813	flavonoid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009866	induced systemic resistance, ethylene mediated signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0009871	jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0010446	response to alkaline pH	IEP	Predict GO terms from Neighborhoods
BP	GO:0010930	negative regulation of auxin mediated signaling pathway	IEP	Predict GO terms from Neighborhoods
MF	GO:0015925	galactosidase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0016093	polyprenol metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0016094	polyprenol biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0016105	triterpenoid catabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0016210	naringenin-chalcone synthase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016412	serine O-acyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	Predict GO terms from Neighborhoods
MF	GO:0016712	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen	IEP	Predict GO terms from Neighborhoods
BP	GO:0019348	dolichol metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019408	dolichol biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019741	pentacyclic triterpenoid catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019745	pentacyclic triterpenoid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0030638	polyketide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0030639	polyketide biosynthetic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0031225	anchored component of membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0032780	negative regulation of ATP-dependent activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0033302	quercetin O-glucoside metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0033329	kaempferol O-glucoside metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0033907	beta-D-fucosidase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0034081	polyketide synthase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0040009	regulation of growth rate	IEP	Predict GO terms from Neighborhoods
BP	GO:0042180	cellular ketone metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042181	ketone biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042182	ketone catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042539	hypotonic salinity response	IEP	Predict GO terms from Neighborhoods
BP	GO:0044550	secondary metabolite biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0045547	dehydrodolichyl diphosphate synthase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0046409	p-coumarate 3-hydroxylase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0046622	positive regulation of organ growth	IEP	Predict GO terms from Neighborhoods
MF	GO:0047701	beta-L-arabinosidase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0048316	seed development	IEP	Predict GO terms from Neighborhoods
MF	GO:0050247	raucaffricine beta-glucosidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0050267	rubber cis-polyprenylcistransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0050506	vomilenine glucosyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0050778	positive regulation of immune response	IEP	Predict GO terms from Neighborhoods
BP	GO:0051552	flavone metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0062150	amorpha-4,11-diene 12-monooxygenase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0080083	beta-gentiobiose beta-glucosidase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0090709	regulation of timing of plant organ formation	IEP	Predict GO terms from Neighborhoods
MF	GO:0102934	costunolide synthase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1901696	cannabinoid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1902381	11-oxo-beta-amyrin metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1902382	11-oxo-beta-amyrin catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1902384	glycyrrhetinate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1902386	glycyrrhetinate biosynthetic process	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR008949	Isoprenoid_synthase_dom_sf	5	271
IPR002060	Squ/phyt_synthse	8	180
IPR006449	Squal_synth-like	4	212

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SOLTUB.AGRIA.G00000035882

Expression Profile

Co-expression Networks

Functional Annotation