SOLTUB.AGRIA.G00000036076

Description : ATP-dependent RNA helicase

Gene families : OG_02_0011072 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000036076
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_124

Type	GO Term	Name	Evidence	Source
BP	GO:0000003	reproduction	None	Extended
MF	GO:0000166	nucleotide binding	None	Extended
CC	GO:0000177	cytoplasmic exosome (RNase complex)	None	Extended
CC	GO:0000178	exosome (RNase complex)	None	Extended
CC	GO:0000262	mitochondrial chromosome	IEA	AHRD
BP	GO:0000957	mitochondrial RNA catabolic process	None	Extended
BP	GO:0000958	mitochondrial mRNA catabolic process	IEA	AHRD
BP	GO:0000959	mitochondrial RNA metabolic process	None	Extended
BP	GO:0000960	regulation of mitochondrial RNA catabolic process	None	Extended
BP	GO:0000962	positive regulation of mitochondrial RNA catabolic process	IEA	AHRD
BP	GO:0000963	mitochondrial RNA processing	None	Extended
BP	GO:0000965	mitochondrial RNA 3'-end processing	None	Extended
BP	GO:0001410	chlamydospore formation	IEA	AHRD
BP	GO:0001558	regulation of cell growth	None	Extended
BP	GO:0001889	liver development	IEA	AHRD
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	AHRD
MF	GO:0003678	DNA helicase activity	IEA	AHRD
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003724	RNA helicase activity	None	Extended
MF	GO:0003725	double-stranded RNA binding	IEA	AHRD
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
MF	GO:0005524	ATP binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	AHRD
CC	GO:0005694	chromosome	None	Extended
BP	GO:0006091	generation of precursor metabolites and energy	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006310	DNA recombination	IEA	AHRD
BP	GO:0006378	mRNA polyadenylation	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	None	Extended
BP	GO:0006399	tRNA metabolic process	None	Extended
BP	GO:0006401	RNA catabolic process	None	Extended
BP	GO:0006402	mRNA catabolic process	None	Extended
BP	GO:0006417	regulation of translation	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007005	mitochondrion organization	None	Extended
BP	GO:0007275	multicellular organism development	None	Extended
BP	GO:0008033	tRNA processing	None	Extended
MF	GO:0008094	ATP-dependent activity, acting on DNA	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008186	ATP-dependent activity, acting on RNA	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009060	aerobic respiration	IEA	AHRD
BP	GO:0009268	response to pH	None	Extended
BP	GO:0009555	pollen development	IEA	AHRD
BP	GO:0009561	megagametogenesis	IEA	AHRD
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009891	positive regulation of biosynthetic process	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0009894	regulation of catabolic process	None	Extended
BP	GO:0009896	positive regulation of catabolic process	None	Extended
BP	GO:0009937	regulation of gibberellic acid mediated signaling pathway	None	Extended
BP	GO:0009939	positive regulation of gibberellic acid mediated signaling pathway	IEA	AHRD
BP	GO:0009966	regulation of signal transduction	None	Extended
BP	GO:0009967	positive regulation of signal transduction	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010467	gene expression	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010570	regulation of filamentous growth	None	Extended
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010608	post-transcriptional regulation of gene expression	None	Extended
BP	GO:0010628	positive regulation of gene expression	None	Extended
BP	GO:0010629	negative regulation of gene expression	None	Extended
BP	GO:0010646	regulation of cell communication	None	Extended
BP	GO:0010647	positive regulation of cell communication	None	Extended
BP	GO:0010928	regulation of auxin mediated signaling pathway	None	Extended
BP	GO:0010929	positive regulation of auxin mediated signaling pathway	IEA	AHRD
BP	GO:0010941	regulation of cell death	None	Extended
BP	GO:0015980	energy derivation by oxidation of organic compounds	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEA	AHRD
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019439	aromatic compound catabolic process	None	Extended
BP	GO:0019954	asexual reproduction	None	Extended
BP	GO:0023051	regulation of signaling	None	Extended
BP	GO:0023056	positive regulation of signaling	None	Extended
BP	GO:0030154	cell differentiation	None	Extended
BP	GO:0030307	positive regulation of cell growth	IEA	AHRD
BP	GO:0030435	sporulation resulting in formation of a cellular spore	None	Extended
BP	GO:0030436	asexual sporulation	None	Extended
BP	GO:0030447	filamentous growth	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
BP	GO:0031123	RNA 3'-end processing	None	Extended
BP	GO:0031124	mRNA 3'-end processing	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031325	positive regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031328	positive regulation of cellular biosynthetic process	None	Extended
BP	GO:0031329	regulation of cellular catabolic process	None	Extended
BP	GO:0031331	positive regulation of cellular catabolic process	None	Extended
BP	GO:0032392	DNA geometric change	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0032508	DNA duplex unwinding	IEA	AHRD
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0032989	cellular component morphogenesis	None	Extended
BP	GO:0032990	cell part morphogenesis	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034248	regulation of cellular amide metabolic process	None	Extended
BP	GO:0034250	positive regulation of cellular amide metabolic process	None	Extended
MF	GO:0034458	3'-5' RNA helicase activity	IEA	AHRD
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034655	nucleobase-containing compound catabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
BP	GO:0035945	mitochondrial ncRNA surveillance	IEA	AHRD
BP	GO:0035946	mitochondrial mRNA surveillance	IEA	AHRD
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0036177	filamentous growth of a population of unicellular organisms in response to pH	IEA	AHRD
BP	GO:0036180	filamentous growth of a population of unicellular organisms in response to biotic stimulus	IEA	AHRD
BP	GO:0036187	cell growth mode switching, budding to filamentous	IEA	AHRD
BP	GO:0040007	growth	None	Extended
BP	GO:0040008	regulation of growth	None	Extended
BP	GO:0042710	biofilm formation	None	Extended
MF	GO:0042802	identical protein binding	None	Extended
MF	GO:0042803	protein homodimerization activity	IEA	AHRD
BP	GO:0042981	regulation of apoptotic process	None	Extended
BP	GO:0043066	negative regulation of apoptotic process	IEA	AHRD
BP	GO:0043067	regulation of programmed cell death	None	Extended
BP	GO:0043069	negative regulation of programmed cell death	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043487	regulation of RNA stability	None	Extended
BP	GO:0043488	regulation of mRNA stability	None	Extended
BP	GO:0043631	RNA polyadenylation	None	Extended
BP	GO:0043934	sporulation	None	Extended
BP	GO:0043936	asexual sporulation resulting in formation of a cellular spore	None	Extended
BP	GO:0044010	single-species biofilm formation	None	Extended
BP	GO:0044011	single-species biofilm formation on inanimate substrate	IEA	AHRD
BP	GO:0044182	filamentous growth of a population of unicellular organisms	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0044270	cellular nitrogen compound catabolic process	None	Extended
BP	GO:0044528	regulation of mitochondrial mRNA stability	IEA	AHRD
CC	GO:0045025	mitochondrial degradosome	IEA	AHRD
BP	GO:0045333	cellular respiration	None	Extended
BP	GO:0045727	positive regulation of translation	None	Extended
BP	GO:0045927	positive regulation of growth	None	Extended
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0046700	heterocycle catabolic process	None	Extended
MF	GO:0046983	protein dimerization activity	None	Extended
BP	GO:0047484	regulation of response to osmotic stress	None	Extended
BP	GO:0048229	gametophyte development	None	Extended
BP	GO:0048468	cell development	None	Extended
BP	GO:0048513	animal organ development	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0048583	regulation of response to stimulus	None	Extended
BP	GO:0048584	positive regulation of response to stimulus	None	Extended
BP	GO:0048646	anatomical structure formation involved in morphogenesis	None	Extended
BP	GO:0048732	gland development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051128	regulation of cellular component organization	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051246	regulation of protein metabolic process	None	Extended
BP	GO:0051247	positive regulation of protein metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051254	positive regulation of RNA metabolic process	None	Extended
BP	GO:0051276	chromosome organization	None	Extended
BP	GO:0051703	biological process involved in intraspecies interaction between organisms	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0060548	negative regulation of cell death	None	Extended
BP	GO:0061013	regulation of mRNA catabolic process	None	Extended
BP	GO:0062125	regulation of mitochondrial gene expression	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065008	regulation of biological quality	None	Extended
BP	GO:0070129	regulation of mitochondrial translation	None	Extended
BP	GO:0070131	positive regulation of mitochondrial translation	IEA	AHRD
BP	GO:0070584	mitochondrion morphogenesis	IEA	AHRD
BP	GO:0070784	regulation of growth of unicellular organism as a thread of attached cells	None	Extended
BP	GO:0070827	obsolete chromatin maintenance	IEA	AHRD
BP	GO:0071025	RNA surveillance	None	Extended
BP	GO:0071026	cytoplasmic RNA surveillance	None	Extended
BP	GO:0071103	DNA conformation change	None	Extended
BP	GO:0071214	cellular response to abiotic stimulus	None	Extended
BP	GO:0071467	cellular response to pH	IEA	AHRD
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0080036	regulation of cytokinin-activated signaling pathway	None	Extended
BP	GO:0080038	positive regulation of cytokinin-activated signaling pathway	IEA	AHRD
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0080134	regulation of response to stress	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0090605	submerged biofilm formation	None	Extended
BP	GO:0090609	single-species submerged biofilm formation	None	Extended
BP	GO:0090615	mitochondrial mRNA processing	None	Extended
BP	GO:0090616	mitochondrial mRNA 3'-end processing	None	Extended
BP	GO:0090646	mitochondrial tRNA processing	IEA	AHRD
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097222	mitochondrial mRNA polyadenylation	IEA	AHRD
MF	GO:0097367	carbohydrate derivative binding	None	Extended
BP	GO:0098630	aggregation of unicellular organisms	None	Extended
BP	GO:0098743	cell aggregation	None	Extended
CC	GO:0098798	mitochondrial protein-containing complex	None	Extended
BP	GO:0104004	cellular response to environmental stimulus	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:0140053	mitochondrial gene expression	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
BP	GO:1900428	regulation of filamentous growth of a population of unicellular organisms	None	Extended
BP	GO:1901000	regulation of response to salt stress	None	Extended
BP	GO:1901002	positive regulation of response to salt stress	IEA	AHRD
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901361	organic cyclic compound catabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
BP	GO:1902584	positive regulation of response to water deprivation	IEA	AHRD
BP	GO:1903311	regulation of mRNA metabolic process	None	Extended
CC	GO:1905354	exoribonuclease complex	None	Extended
BP	GO:2000070	regulation of response to water deprivation	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2000827	mitochondrial RNA surveillance	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0005669	transcription factor TFIID complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0006352	DNA-templated transcription initiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006367	transcription initiation at RNA polymerase II promoter	IEP	Predict GO terms from Neighborhoods
BP	GO:0071824	protein-DNA complex subunit organization	IEP	Predict GO terms from Neighborhoods
CC	GO:0090575	RNA polymerase II transcription regulator complex	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR041082	Suv3_C_1	603	645
IPR027417	P-loop_NTPase	253	523
IPR001650	Helicase_C	413	521
IPR022192	SUV3_C	667	714

External Links

No external refs found!

SOLTUB.AGRIA.G00000036076

Expression Profile

Co-expression Networks

Functional Annotation