SOLTUB.AGRIA.G00000003630

Description : Ubiquitin carboxyl-terminal hydrolase family protein

Gene families : OG_02_0012271 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000003630
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_130

Type	GO Term	Name	Evidence	Source
BP	GO:0000373	Group II intron splicing	IEA	AHRD
BP	GO:0000375	RNA splicing, via transesterification reactions	None	Extended
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003729	mRNA binding	IEA	AHRD
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	IEA	AHRD
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008285	negative regulation of cell population proliferation	IEA	AHRD
BP	GO:0008380	RNA splicing	None	Extended
CC	GO:0009507	chloroplast	IEA	AHRD
CC	GO:0009536	plastid	None	Extended
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010015	root morphogenesis	None	Extended
BP	GO:0010101	post-embryonic root morphogenesis	None	Extended
BP	GO:0010102	lateral root morphogenesis	IEA	AHRD
BP	GO:0015979	photosynthesis	IEA	AHRD
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0042127	regulation of cell population proliferation	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0090697	post-embryonic plant organ morphogenesis	None	Extended
BP	GO:0090698	post-embryonic plant morphogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1905392	plant organ morphogenesis	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000154	rRNA modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0000372	Group I intron splicing	IEP	Predict GO terms from Neighborhoods
BP	GO:0000376	RNA splicing, via transesterification reactions with guanosine as nucleophile	IEP	Predict GO terms from Neighborhoods
CC	GO:0000427	plastid-encoded plastid RNA polymerase complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0000428	DNA-directed RNA polymerase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0000478	endonucleolytic cleavage involved in rRNA processing	IEP	Predict GO terms from Neighborhoods
CC	GO:0000502	proteasome complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0000959	mitochondrial RNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0001510	RNA methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0001654	eye development	IEP	Predict GO terms from Neighborhoods
BP	GO:0002103	endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	IEP	Predict GO terms from Neighborhoods
BP	GO:0003007	heart morphogenesis	IEP	Predict GO terms from Neighborhoods
MF	GO:0003824	catalytic activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004176	ATP-dependent peptidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004396	hexokinase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004518	nuclease activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004519	endonuclease activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005739	mitochondrion	IEP	Predict GO terms from Neighborhoods
BP	GO:0006000	fructose metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006220	pyrimidine nucleotide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006221	pyrimidine nucleotide biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006225	UDP biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006241	CTP biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006305	DNA alkylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006306	DNA methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006351	DNA-templated transcription	IEP	Predict GO terms from Neighborhoods
BP	GO:0006364	rRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0006390	mitochondrial transcription	IEP	Predict GO terms from Neighborhoods
BP	GO:0006996	organelle organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0007519	skeletal muscle tissue development	IEP	Predict GO terms from Neighborhoods
MF	GO:0008865	fructokinase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0009041	uridylate kinase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009059	macromolecule biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009123	nucleoside monophosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009133	nucleoside diphosphate biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009138	pyrimidine nucleoside diphosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009139	pyrimidine nucleoside diphosphate biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009142	nucleoside triphosphate biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009147	pyrimidine nucleoside triphosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009148	pyrimidine nucleoside triphosphate biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009188	ribonucleoside diphosphate biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009193	pyrimidine ribonucleoside diphosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009194	pyrimidine ribonucleoside diphosphate biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009201	ribonucleoside triphosphate biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009208	pyrimidine ribonucleoside triphosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009209	pyrimidine ribonucleoside triphosphate biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009218	pyrimidine ribonucleotide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009220	pyrimidine ribonucleotide biosynthetic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0009295	nucleoid	IEP	Predict GO terms from Neighborhoods
BP	GO:0009451	RNA modification	IEP	Predict GO terms from Neighborhoods
CC	GO:0009526	plastid envelope	IEP	Predict GO terms from Neighborhoods
CC	GO:0009532	plastid stroma	IEP	Predict GO terms from Neighborhoods
CC	GO:0009535	chloroplast thylakoid membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0009657	plastid organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0009658	chloroplast organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0009662	etioplast organization	IEP	Predict GO terms from Neighborhoods
CC	GO:0009941	chloroplast envelope	IEP	Predict GO terms from Neighborhoods
BP	GO:0010020	chloroplast fission	IEP	Predict GO terms from Neighborhoods
CC	GO:0010319	stromule	IEP	Predict GO terms from Neighborhoods
BP	GO:0010468	regulation of gene expression	IEP	Predict GO terms from Neighborhoods
BP	GO:0016051	carbohydrate biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0016072	rRNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0016553	base conversion or substitution editing	IEP	Predict GO terms from Neighborhoods
BP	GO:0016554	cytidine to uridine editing	IEP	Predict GO terms from Neighborhoods
BP	GO:0016556	mRNA modification	IEP	Predict GO terms from Neighborhoods
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	Predict GO terms from Neighborhoods
MF	GO:0016776	phosphotransferase activity, phosphate group as acceptor	IEP	Predict GO terms from Neighborhoods
MF	GO:0016788	hydrolase activity, acting on ester bonds	IEP	Predict GO terms from Neighborhoods
MF	GO:0016879	ligase activity, forming carbon-nitrogen bonds	IEP	Predict GO terms from Neighborhoods
MF	GO:0016881	acid-amino acid ligase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016891	endoribonuclease activity, producing 5'-phosphomonoesters	IEP	Predict GO terms from Neighborhoods
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	IEP	Predict GO terms from Neighborhoods
BP	GO:0018130	heterocycle biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0019200	carbohydrate kinase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0019205	nucleobase-containing compound kinase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0019438	aromatic compound biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0021515	cell differentiation in spinal cord	IEP	Predict GO terms from Neighborhoods
BP	GO:0021517	ventral spinal cord development	IEP	Predict GO terms from Neighborhoods
BP	GO:0021953	central nervous system neuron differentiation	IEP	Predict GO terms from Neighborhoods
CC	GO:0030016	myofibril	IEP	Predict GO terms from Neighborhoods
BP	GO:0030239	myofibril assembly	IEP	Predict GO terms from Neighborhoods
CC	GO:0030880	RNA polymerase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0030902	hindbrain development	IEP	Predict GO terms from Neighborhoods
BP	GO:0031032	actomyosin structure organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0031425	chloroplast RNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0031426	polycistronic mRNA processing	IEP	Predict GO terms from Neighborhoods
CC	GO:0031967	organelle envelope	IEP	Predict GO terms from Neighborhoods
CC	GO:0031975	envelope	IEP	Predict GO terms from Neighborhoods
BP	GO:0032088	negative regulation of NF-kappaB transcription factor activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0032259	methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0032774	RNA biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0033862	UMP kinase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0034245	mitochondrial DNA-directed RNA polymerase complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0034357	photosynthetic membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0034414	tRNA 3'-trailer cleavage, endonucleolytic	IEP	Predict GO terms from Neighborhoods
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042220	response to cocaine	IEP	Predict GO terms from Neighborhoods
CC	GO:0042644	chloroplast nucleoid	IEP	Predict GO terms from Neighborhoods
CC	GO:0042645	mitochondrial nucleoid	IEP	Predict GO terms from Neighborhoods
CC	GO:0042646	plastid nucleoid	IEP	Predict GO terms from Neighborhoods
CC	GO:0042651	thylakoid membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0042779	tRNA 3'-trailer cleavage	IEP	Predict GO terms from Neighborhoods
MF	GO:0042781	3'-tRNA processing endoribonuclease activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0042793	plastid transcription	IEP	Predict GO terms from Neighborhoods
BP	GO:0043010	camera-type eye development	IEP	Predict GO terms from Neighborhoods
CC	GO:0043228	non-membrane-bounded organelle	IEP	Predict GO terms from Neighborhoods
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	Predict GO terms from Neighborhoods
CC	GO:0043292	contractile fiber	IEP	Predict GO terms from Neighborhoods
BP	GO:0043412	macromolecule modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0043414	macromolecule methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0043489	RNA stabilization	IEP	Predict GO terms from Neighborhoods
BP	GO:0043516	regulation of DNA damage response, signal transduction by p53 class mediator	IEP	Predict GO terms from Neighborhoods
BP	GO:0043572	plastid fission	IEP	Predict GO terms from Neighborhoods
MF	GO:0043621	protein self-association	IEP	Predict GO terms from Neighborhoods
BP	GO:0044210	'de novo' CTP biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0044728	DNA methylation or demethylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0046036	CTP metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046048	UDP metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0046914	transition metal ion binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0046940	nucleoside monophosphate phosphorylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0048066	developmental pigmentation	IEP	Predict GO terms from Neighborhoods
BP	GO:0048514	blood vessel morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0048568	embryonic organ development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048665	neuron fate specification	IEP	Predict GO terms from Neighborhoods
BP	GO:0048880	sensory system development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048881	mechanosensory lateral line system development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048882	lateral line development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048925	lateral line system development	IEP	Predict GO terms from Neighborhoods
MF	GO:0050145	nucleoside monophosphate kinase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0050897	cobalt ion binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0055035	plastid thylakoid membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0060537	muscle tissue development	IEP	Predict GO terms from Neighborhoods
CC	GO:0061695	transferase complex, transferring phosphorus-containing groups	IEP	Predict GO terms from Neighborhoods
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0080156	mitochondrial mRNA modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0090305	nucleic acid phosphodiester bond hydrolysis	IEP	Predict GO terms from Neighborhoods
BP	GO:0090501	RNA phosphodiester bond hydrolysis	IEP	Predict GO terms from Neighborhoods
BP	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic	IEP	Predict GO terms from Neighborhoods
BP	GO:0090615	mitochondrial mRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0097659	nucleic acid-templated transcription	IEP	Predict GO terms from Neighborhoods
MF	GO:0097747	RNA polymerase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0140040	mitochondrial polycistronic RNA processing	IEP	Predict GO terms from Neighborhoods
CC	GO:0140535	intracellular protein-containing complex	IEP	Predict GO terms from Neighborhoods
BP	GO:1900864	mitochondrial RNA modification	IEP	Predict GO terms from Neighborhoods
BP	GO:1900865	chloroplast RNA modification	IEP	Predict GO terms from Neighborhoods
BP	GO:1900871	chloroplast mRNA modification	IEP	Predict GO terms from Neighborhoods
BP	GO:1901259	chloroplast rRNA processing	IEP	Predict GO terms from Neighborhoods
CC	GO:1902494	catalytic complex	IEP	Predict GO terms from Neighborhoods
BP	GO:1905267	endonucleolytic cleavage involved in tRNA processing	IEP	Predict GO terms from Neighborhoods
CC	GO:1905368	peptidase complex	IEP	Predict GO terms from Neighborhoods
CC	GO:1905369	endopeptidase complex	IEP	Predict GO terms from Neighborhoods
CC	GO:1990234	transferase complex	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR021099	PORR_domain	116	446

External Links

No external refs found!

SOLTUB.AGRIA.G00000003630

Expression Profile

Co-expression Networks

Functional Annotation