Coexpression cluster: Cluster_130 (HCCA Clusters (HRR 50 & PCC 0.5))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0006139 nucleobase-containing compound metabolic process 44.94% (40/89) 2.15 0.0 0.0
GO:0090304 nucleic acid metabolic process 40.45% (36/89) 2.29 0.0 0.0
GO:0016070 RNA metabolic process 33.71% (30/89) 2.5 0.0 0.0
GO:0009532 plastid stroma 23.6% (21/89) 3.31 0.0 0.0
GO:0046483 heterocycle metabolic process 46.07% (41/89) 1.81 0.0 0.0
GO:0034641 cellular nitrogen compound metabolic process 46.07% (41/89) 1.76 0.0 0.0
GO:0045036 protein targeting to chloroplast 8.99% (8/89) 6.02 0.0 0.0
GO:0072596 establishment of protein localization to chloroplast 8.99% (8/89) 6.02 0.0 0.0
GO:0072598 protein localization to chloroplast 8.99% (8/89) 6.0 0.0 0.0
GO:0003723 RNA binding 31.46% (28/89) 2.28 0.0 0.0
GO:0009570 chloroplast stroma 20.22% (18/89) 3.14 0.0 0.0
GO:0045037 protein import into chloroplast stroma 7.87% (7/89) 6.46 0.0 0.0
GO:0006396 RNA processing 25.84% (23/89) 2.58 0.0 0.0
GO:0006725 cellular aromatic compound metabolic process 46.07% (41/89) 1.61 0.0 0.0
GO:0042644 chloroplast nucleoid 8.99% (8/89) 5.65 0.0 0.0
GO:0009295 nucleoid 10.11% (9/89) 5.08 0.0 0.0
GO:0042646 plastid nucleoid 8.99% (8/89) 5.51 0.0 0.0
GO:0003729 mRNA binding 24.72% (22/89) 2.53 0.0 0.0
GO:1901360 organic cyclic compound metabolic process 46.07% (41/89) 1.48 0.0 0.0
GO:0008320 protein transmembrane transporter activity 7.87% (7/89) 5.7 0.0 0.0
GO:0005739 mitochondrion 25.84% (23/89) 2.33 0.0 0.0
GO:0022884 macromolecule transmembrane transporter activity 7.87% (7/89) 5.59 0.0 0.0
GO:0043170 macromolecule metabolic process 52.81% (47/89) 1.24 0.0 0.0
GO:0140318 protein transporter activity 7.87% (7/89) 5.32 0.0 0.0
GO:0042170 plastid membrane 16.85% (15/89) 2.97 0.0 0.0
GO:0140640 catalytic activity, acting on a nucleic acid 17.98% (16/89) 2.79 0.0 0.0
GO:0009536 plastid 25.84% (23/89) 2.13 0.0 0.0
GO:0006807 nitrogen compound metabolic process 58.43% (52/89) 1.06 0.0 0.0
GO:0016464 chloroplast protein-transporting ATPase activity 4.49% (4/89) 7.61 0.0 0.0
GO:0009507 chloroplast 21.35% (19/89) 2.31 0.0 0.0
GO:0003674 molecular_function 87.64% (78/89) 0.55 0.0 0.0
GO:0065002 intracellular protein transmembrane transport 7.87% (7/89) 4.77 0.0 0.0
GO:1901363 heterocyclic compound binding 52.81% (47/89) 1.09 0.0 1e-06
GO:0062091 Ycf2/FtsHi complex 4.49% (4/89) 7.19 0.0 1e-06
GO:0031969 chloroplast membrane 11.24% (10/89) 3.55 0.0 1e-06
GO:0097159 organic cyclic compound binding 52.81% (47/89) 1.08 0.0 1e-06
GO:0044238 primary metabolic process 60.67% (54/89) 0.93 0.0 1e-06
GO:0071806 protein transmembrane transport 7.87% (7/89) 4.52 0.0 1e-06
GO:0003676 nucleic acid binding 38.2% (34/89) 1.39 0.0 1e-06
GO:0006397 mRNA processing 12.36% (11/89) 3.18 0.0 2e-06
GO:0009987 cellular process 79.78% (71/89) 0.61 0.0 3e-06
GO:0140098 catalytic activity, acting on RNA 13.48% (12/89) 2.91 0.0 3e-06
GO:0000373 Group II intron splicing 5.62% (5/89) 5.58 0.0 3e-06
GO:0000427 plastid-encoded plastid RNA polymerase complex 4.49% (4/89) 6.39 0.0 6e-06
GO:0009451 RNA modification 12.36% (11/89) 2.97 0.0 6e-06
GO:0005488 binding 76.4% (68/89) 0.61 0.0 1.1e-05
GO:0016071 mRNA metabolic process 14.61% (13/89) 2.54 0.0 1.2e-05
GO:0044237 cellular metabolic process 59.55% (53/89) 0.81 1e-06 2.2e-05
GO:0019866 organelle inner membrane 8.99% (8/89) 3.46 1e-06 2.5e-05
GO:0015450 protein-transporting ATPase activity 4.49% (4/89) 5.82 1e-06 2.5e-05
GO:0004176 ATP-dependent peptidase activity 4.49% (4/89) 5.61 1e-06 4.6e-05
GO:0071704 organic substance metabolic process 61.8% (55/89) 0.74 2e-06 5.7e-05
GO:0006605 protein targeting 8.99% (8/89) 3.29 2e-06 5.7e-05
GO:0000428 DNA-directed RNA polymerase complex 5.62% (5/89) 4.52 3e-06 8.8e-05
GO:0008152 metabolic process 64.04% (57/89) 0.69 3e-06 9.3e-05
GO:0000959 mitochondrial RNA metabolic process 8.99% (8/89) 3.13 4e-06 0.000116
GO:0030880 RNA polymerase complex 5.62% (5/89) 4.39 4e-06 0.00013
GO:0034660 ncRNA metabolic process 13.48% (12/89) 2.31 5e-06 0.000156
GO:0009657 plastid organization 10.11% (9/89) 2.8 6e-06 0.000173
GO:0004222 metalloendopeptidase activity 4.49% (4/89) 5.08 6e-06 0.000175
GO:0031967 organelle envelope 13.48% (12/89) 2.24 8e-06 0.000228
GO:0031975 envelope 13.48% (12/89) 2.24 8e-06 0.000228
GO:0072594 establishment of protein localization to organelle 8.99% (8/89) 2.96 9e-06 0.000242
GO:0006457 protein folding 7.87% (7/89) 3.18 1.3e-05 0.000342
GO:1904215 regulation of protein import into chloroplast stroma 2.25% (2/89) 8.19 1.5e-05 0.000397
GO:0009658 chloroplast organization 8.99% (8/89) 2.82 1.9e-05 0.000486
GO:0009706 chloroplast inner membrane 5.62% (5/89) 3.92 2.1e-05 0.000532
GO:0009534 chloroplast thylakoid 5.62% (5/89) 3.9 2.3e-05 0.000543
GO:0009526 plastid envelope 11.24% (10/89) 2.38 2.2e-05 0.000545
GO:0009508 plastid chromosome 3.37% (3/89) 5.78 2.2e-05 0.000552
GO:0031976 plastid thylakoid 5.62% (5/89) 3.88 2.4e-05 0.000556
GO:0110165 cellular anatomical entity 80.9% (72/89) 0.43 2.3e-05 0.000556
GO:0008150 biological_process 82.02% (73/89) 0.41 2.4e-05 0.000563
GO:0042793 plastid transcription 3.37% (3/89) 5.72 2.5e-05 0.000568
GO:0010206 photosystem II repair 3.37% (3/89) 5.72 2.5e-05 0.000568
GO:0042651 thylakoid membrane 8.99% (8/89) 2.74 2.7e-05 0.000605
GO:0034357 photosynthetic membrane 8.99% (8/89) 2.73 2.9e-05 0.000639
GO:0009662 etioplast organization 2.25% (2/89) 7.78 3.1e-05 0.000661
GO:0004518 nuclease activity 7.87% (7/89) 2.96 3.5e-05 0.000747
GO:0006399 tRNA metabolic process 7.87% (7/89) 2.95 3.6e-05 0.000761
GO:0003824 catalytic activity 53.93% (48/89) 0.71 3.8e-05 0.00078
GO:0001510 RNA methylation 4.49% (4/89) 4.42 3.8e-05 0.000787
GO:0009528 plastid inner membrane 5.62% (5/89) 3.72 4.2e-05 0.000844
GO:0005575 cellular_component 80.9% (72/89) 0.41 4.6e-05 0.000918
GO:0031425 chloroplast RNA processing 5.62% (5/89) 3.65 5.2e-05 0.001029
GO:0061695 transferase complex, transferring phosphorus-containing groups 6.74% (6/89) 3.13 6.6e-05 0.001295
GO:0030091 protein repair 3.37% (3/89) 5.19 7.7e-05 0.001475
GO:0033365 protein localization to organelle 10.11% (9/89) 2.33 7.7e-05 0.00149
GO:0009941 chloroplast envelope 10.11% (9/89) 2.31 8.7e-05 0.00165
GO:0034654 nucleobase-containing compound biosynthetic process 10.11% (9/89) 2.3 8.9e-05 0.001663
GO:0002803 positive regulation of antibacterial peptide production 2.25% (2/89) 6.97 0.000107 0.001853
GO:0002805 regulation of antimicrobial peptide biosynthetic process 2.25% (2/89) 6.97 0.000107 0.001853
GO:0002807 positive regulation of antimicrobial peptide biosynthetic process 2.25% (2/89) 6.97 0.000107 0.001853
GO:0002808 regulation of antibacterial peptide biosynthetic process 2.25% (2/89) 6.97 0.000107 0.001853
GO:0006963 positive regulation of antibacterial peptide biosynthetic process 2.25% (2/89) 6.97 0.000107 0.001853
GO:0042254 ribosome biogenesis 4.49% (4/89) 4.06 0.000101 0.001861
GO:0031426 polycistronic mRNA processing 3.37% (3/89) 5.04 0.000106 0.001939
GO:0008237 metallopeptidase activity 4.49% (4/89) 3.98 0.000125 0.002143
GO:0140053 mitochondrial gene expression 5.62% (5/89) 3.28 0.000173 0.002937
GO:0000154 rRNA modification 3.37% (3/89) 4.78 0.000183 0.003082
GO:0008380 RNA splicing 6.74% (6/89) 2.84 0.000198 0.003304
GO:0045737 positive regulation of cyclin-dependent protein serine/threonine kinase activity 2.25% (2/89) 6.46 0.000228 0.003652
GO:1904031 positive regulation of cyclin-dependent protein kinase activity 2.25% (2/89) 6.46 0.000228 0.003652
GO:0070475 rRNA base methylation 2.25% (2/89) 6.46 0.000228 0.003652
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile 5.62% (5/89) 3.2 0.000224 0.003693
GO:0000375 RNA splicing, via transesterification reactions 5.62% (5/89) 3.16 0.000251 0.003985
GO:0015031 protein transport 11.24% (10/89) 1.95 0.000267 0.004157
GO:1904949 ATPase complex 4.49% (4/89) 3.7 0.000265 0.004161
GO:0003916 DNA topoisomerase activity 2.25% (2/89) 6.32 0.000278 0.004293
GO:0004519 endonuclease activity 5.62% (5/89) 3.12 0.000291 0.004451
GO:0034250 positive regulation of cellular amide metabolic process 5.62% (5/89) 3.09 0.000318 0.004825
GO:0010467 gene expression 5.62% (5/89) 3.08 0.000324 0.004867
GO:0000372 Group I intron splicing 2.25% (2/89) 6.19 0.000333 0.004876
GO:0000376 RNA splicing, via transesterification reactions with guanosine as nucleophile 2.25% (2/89) 6.19 0.000333 0.004876
GO:0140040 mitochondrial polycistronic RNA processing 2.25% (2/89) 6.19 0.000333 0.004876
GO:0050678 regulation of epithelial cell proliferation 3.37% (3/89) 4.46 0.000355 0.005154
GO:1902494 catalytic complex 14.61% (13/89) 1.59 0.000364 0.00523
GO:0140101 catalytic activity, acting on a tRNA 5.62% (5/89) 3.03 0.000385 0.005493
GO:0006265 DNA topological change 2.25% (2/89) 6.08 0.000393 0.005514
GO:0032088 negative regulation of NF-kappaB transcription factor activity 2.25% (2/89) 6.08 0.000393 0.005514
GO:0045184 establishment of protein localization 11.24% (10/89) 1.86 0.000438 0.00609
GO:0002786 regulation of antibacterial peptide production 2.25% (2/89) 5.97 0.000458 0.006318
GO:0008173 RNA methyltransferase activity 3.37% (3/89) 4.3 0.000492 0.006727
GO:0004812 aminoacyl-tRNA ligase activity 3.37% (3/89) 4.28 0.000514 0.006805
GO:0006418 tRNA aminoacylation for protein translation 3.37% (3/89) 4.28 0.000514 0.006805
GO:0016875 ligase activity, forming carbon-oxygen bonds 3.37% (3/89) 4.28 0.000514 0.006805
GO:0002225 positive regulation of antimicrobial peptide production 2.25% (2/89) 5.87 0.000528 0.006831
GO:0002760 positive regulation of antimicrobial humoral response 2.25% (2/89) 5.87 0.000528 0.006831
GO:0061077 chaperone-mediated protein folding 4.49% (4/89) 3.46 0.000504 0.006832
GO:0022613 ribonucleoprotein complex biogenesis 4.49% (4/89) 3.44 0.000528 0.006935
GO:0009579 thylakoid 5.62% (5/89) 2.92 0.000551 0.007069
GO:0016553 base conversion or substitution editing 4.49% (4/89) 3.4 0.000592 0.007538
GO:0043038 amino acid activation 3.37% (3/89) 4.19 0.000607 0.007568
GO:0043039 tRNA aminoacylation 3.37% (3/89) 4.19 0.000607 0.007568
GO:0006886 intracellular protein transport 8.99% (8/89) 2.09 0.000602 0.007613
GO:0016072 rRNA metabolic process 6.74% (6/89) 2.52 0.000641 0.007928
GO:0035639 purine ribonucleoside triphosphate binding 15.73% (14/89) 1.42 0.000677 0.008315
GO:0043228 non-membrane-bounded organelle 20.22% (18/89) 1.2 0.000692 0.00837
GO:0043232 intracellular non-membrane-bounded organelle 20.22% (18/89) 1.2 0.000692 0.00837
GO:0140657 ATP-dependent activity 8.99% (8/89) 2.03 0.00077 0.009255
GO:0071702 organic substance transport 15.73% (14/89) 1.4 0.000782 0.009324
GO:0010020 chloroplast fission 2.25% (2/89) 5.53 0.000855 0.010054
GO:0043572 plastid fission 2.25% (2/89) 5.53 0.000855 0.010054
GO:0034248 regulation of cellular amide metabolic process 7.87% (7/89) 2.2 0.000862 0.010069
GO:0034470 ncRNA processing 8.99% (8/89) 2.0 0.0009 0.01044
GO:0051649 establishment of localization in cell 12.36% (11/89) 1.61 0.000941 0.010836
GO:0009793 embryo development ending in seed dormancy 10.11% (9/89) 1.83 0.000994 0.011368
GO:0043085 positive regulation of catalytic activity 6.74% (6/89) 2.4 0.001019 0.011505
GO:0055035 plastid thylakoid membrane 6.74% (6/89) 2.4 0.001019 0.011505
GO:0050680 negative regulation of epithelial cell proliferation 2.25% (2/89) 5.39 0.001047 0.011736
GO:0097367 carbohydrate derivative binding 16.85% (15/89) 1.29 0.00108 0.012032
GO:0002784 regulation of antimicrobial peptide production 2.25% (2/89) 5.32 0.00115 0.012638
GO:0002922 positive regulation of humoral immune response 2.25% (2/89) 5.32 0.00115 0.012638
GO:0002759 regulation of antimicrobial humoral response 2.25% (2/89) 5.26 0.001257 0.013642
GO:1901259 chloroplast rRNA processing 2.25% (2/89) 5.26 0.001257 0.013642
GO:0006351 DNA-templated transcription 4.49% (4/89) 3.1 0.001267 0.013656
GO:0000963 mitochondrial RNA processing 4.49% (4/89) 3.09 0.001313 0.014061
GO:0043281 regulation of cysteine-type endopeptidase activity involved in apoptotic process 3.37% (3/89) 3.79 0.001358 0.014452
GO:0097659 nucleic acid-templated transcription 4.49% (4/89) 3.06 0.001384 0.014638
GO:0032555 purine ribonucleotide binding 15.73% (14/89) 1.31 0.001404 0.014671
GO:0043229 intracellular organelle 56.18% (50/89) 0.49 0.001403 0.014748
GO:0016779 nucleotidyltransferase activity 4.49% (4/89) 3.04 0.001458 0.015133
GO:0017076 purine nucleotide binding 15.73% (14/89) 1.3 0.001492 0.015397
GO:0016853 isomerase activity 5.62% (5/89) 2.58 0.001528 0.01567
GO:0003697 single-stranded DNA binding 4.49% (4/89) 3.02 0.00156 0.015904
GO:0022857 transmembrane transporter activity 12.36% (11/89) 1.52 0.00158 0.016005
GO:0043226 organelle 56.18% (50/89) 0.48 0.001622 0.016334
GO:0043167 ion binding 31.46% (28/89) 0.79 0.001676 0.016782
GO:0043231 intracellular membrane-bounded organelle 50.56% (45/89) 0.53 0.001714 0.017063
GO:0032553 ribonucleotide binding 15.73% (14/89) 1.27 0.001817 0.017975
GO:0005524 ATP binding 13.48% (12/89) 1.4 0.001903 0.01872
GO:2000116 regulation of cysteine-type endopeptidase activity 3.37% (3/89) 3.61 0.00196 0.019169
GO:0051353 positive regulation of oxidoreductase activity 2.25% (2/89) 4.92 0.002 0.019441
GO:0009527 plastid outer membrane 3.37% (3/89) 3.58 0.002065 0.019966
GO:0002920 regulation of humoral immune response 2.25% (2/89) 4.82 0.002283 0.020109
GO:0090228 positive regulation of red or far-red light signaling pathway 1.12% (1/89) 8.78 0.002277 0.020157
GO:0035597 N6-isopentenyladenosine methylthiotransferase activity 1.12% (1/89) 8.78 0.002277 0.020157
GO:1900226 negative regulation of NLRP3 inflammasome complex assembly 1.12% (1/89) 8.78 0.002277 0.020157
GO:0033258 plastid DNA metabolic process 1.12% (1/89) 8.78 0.002277 0.020157
GO:0033259 plastid DNA replication 1.12% (1/89) 8.78 0.002277 0.020157
GO:0009537 proplastid 1.12% (1/89) 8.78 0.002277 0.020157
GO:0004734 pyrimidodiazepine synthase activity 1.12% (1/89) 8.78 0.002277 0.020157
GO:0006728 pteridine biosynthetic process 1.12% (1/89) 8.78 0.002277 0.020157
GO:0016648 oxidoreductase activity, acting on the CH-NH group of donors, disulfide as acceptor 1.12% (1/89) 8.78 0.002277 0.020157
GO:0019889 pteridine metabolic process 1.12% (1/89) 8.78 0.002277 0.020157
GO:0071424 rRNA (cytosine-N4-)-methyltransferase activity 1.12% (1/89) 8.78 0.002277 0.020157
GO:1902775 mitochondrial large ribosomal subunit assembly 1.12% (1/89) 8.78 0.002277 0.020157
GO:0031968 organelle outer membrane 4.49% (4/89) 2.89 0.00215 0.020546
GO:0030488 tRNA methylation 2.25% (2/89) 4.87 0.002139 0.020562
GO:0019843 rRNA binding 4.49% (4/89) 2.85 0.002388 0.020922
GO:0005215 transporter activity 12.36% (11/89) 1.44 0.002401 0.020924
GO:0019867 outer membrane 4.49% (4/89) 2.88 0.002216 0.020942
GO:0043227 membrane-bounded organelle 50.56% (45/89) 0.52 0.002204 0.020942
GO:0006364 rRNA processing 5.62% (5/89) 2.4 0.002634 0.022841
GO:0016788 hydrolase activity, acting on ester bonds 11.24% (10/89) 1.51 0.002703 0.023315
GO:0003727 single-stranded RNA binding 4.49% (4/89) 2.8 0.002721 0.023347
GO:0031167 rRNA methylation 2.25% (2/89) 4.69 0.002743 0.023417
GO:0043168 anion binding 17.98% (16/89) 1.09 0.003056 0.025958
GO:0000166 nucleotide binding 20.22% (18/89) 0.99 0.003319 0.027913
GO:1901265 nucleoside phosphate binding 20.22% (18/89) 0.99 0.003319 0.027913
GO:0042626 ATPase-coupled transmembrane transporter activity 4.49% (4/89) 2.7 0.003433 0.028582
GO:1903533 regulation of protein targeting 2.25% (2/89) 4.53 0.003417 0.028591
GO:0009165 nucleotide biosynthetic process 4.49% (4/89) 2.7 0.003478 0.028818
GO:0032559 adenyl ribonucleotide binding 13.48% (12/89) 1.29 0.00352 0.029022
GO:0055085 transmembrane transport 11.24% (10/89) 1.45 0.003624 0.029731
GO:0030554 adenyl nucleotide binding 13.48% (12/89) 1.28 0.003667 0.029938
GO:1901293 nucleoside phosphate biosynthetic process 4.49% (4/89) 2.67 0.003711 0.030158
GO:0046907 intracellular transport 10.11% (9/89) 1.54 0.003734 0.030197
GO:0071277 cellular response to calcium ion 2.25% (2/89) 4.46 0.00378 0.030419
GO:0016556 mRNA modification 4.49% (4/89) 2.65 0.003856 0.030889
GO:1904216 positive regulation of protein import into chloroplast stroma 1.12% (1/89) 7.78 0.004549 0.032419
GO:0035596 methylthiotransferase activity 1.12% (1/89) 7.78 0.004549 0.032419
GO:0035600 tRNA methylthiolation 1.12% (1/89) 7.78 0.004549 0.032419
GO:0050497 alkylthioltransferase activity 1.12% (1/89) 7.78 0.004549 0.032419
GO:0004821 histidine-tRNA ligase activity 1.12% (1/89) 7.78 0.004549 0.032419
GO:0006427 histidyl-tRNA aminoacylation 1.12% (1/89) 7.78 0.004549 0.032419
GO:0070455 positive regulation of heme biosynthetic process 1.12% (1/89) 7.78 0.004549 0.032419
GO:0010157 response to chlorate 1.12% (1/89) 7.78 0.004549 0.032419
GO:0032715 negative regulation of interleukin-6 production 1.12% (1/89) 7.78 0.004549 0.032419
GO:1904415 regulation of xenophagy 1.12% (1/89) 7.78 0.004549 0.032419
GO:1904417 positive regulation of xenophagy 1.12% (1/89) 7.78 0.004549 0.032419
GO:0070094 positive regulation of glucagon secretion 1.12% (1/89) 7.78 0.004549 0.032419
GO:0046360 2-oxobutyrate biosynthetic process 1.12% (1/89) 7.78 0.004549 0.032419
GO:0046361 2-oxobutyrate metabolic process 1.12% (1/89) 7.78 0.004549 0.032419
GO:0016862 intramolecular oxidoreductase activity, interconverting keto- and enol-groups 1.12% (1/89) 7.78 0.004549 0.032419
GO:0043715 2,3-diketo-5-methylthiopentyl-1-phosphate enolase activity 1.12% (1/89) 7.78 0.004549 0.032419
GO:0043716 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase activity 1.12% (1/89) 7.78 0.004549 0.032419
GO:0043874 acireductone synthase activity 1.12% (1/89) 7.78 0.004549 0.032419
GO:0033355 ascorbate glutathione cycle 1.12% (1/89) 7.78 0.004549 0.032419
GO:0045174 glutathione dehydrogenase (ascorbate) activity 1.12% (1/89) 7.78 0.004549 0.032419
GO:0034335 DNA negative supercoiling activity 1.12% (1/89) 7.78 0.004549 0.032419
GO:0033674 positive regulation of kinase activity 3.37% (3/89) 3.23 0.004079 0.032513
GO:0005743 mitochondrial inner membrane 3.37% (3/89) 3.17 0.004585 0.032539
GO:1900864 mitochondrial RNA modification 4.49% (4/89) 2.63 0.004107 0.032582
GO:0008104 protein localization 11.24% (10/89) 1.4 0.004642 0.032806
GO:0009501 amyloplast 2.25% (2/89) 4.29 0.004762 0.033514
GO:0008033 tRNA processing 4.49% (4/89) 2.56 0.004865 0.034097
GO:0019693 ribose phosphate metabolic process 5.62% (5/89) 2.23 0.004348 0.034178
GO:0044260 cellular macromolecule metabolic process 17.98% (16/89) 1.04 0.004347 0.034329
GO:0071705 nitrogen compound transport 12.36% (11/89) 1.32 0.004484 0.035077
GO:0009535 chloroplast thylakoid membrane 5.62% (5/89) 2.15 0.005591 0.039023
GO:0016554 cytidine to uridine editing 3.37% (3/89) 3.06 0.005707 0.039669
GO:0016874 ligase activity 4.49% (4/89) 2.47 0.006038 0.041793
GO:0071902 positive regulation of protein serine/threonine kinase activity 2.25% (2/89) 4.11 0.006079 0.041905
GO:0036424 L-phosphoserine phosphatase activity 1.12% (1/89) 7.19 0.006815 0.042774
GO:0036425 obsolete D-phosphoserine phosphatase activity 1.12% (1/89) 7.19 0.006815 0.042774
GO:0043530 adenosine 5'-monophosphoramidase activity 1.12% (1/89) 7.19 0.006815 0.042774
GO:0070131 positive regulation of mitochondrial translation 1.12% (1/89) 7.19 0.006815 0.042774
GO:0002938 tRNA guanine ribose methylation 1.12% (1/89) 7.19 0.006815 0.042774
GO:0000095 S-adenosyl-L-methionine transmembrane transporter activity 1.12% (1/89) 7.19 0.006815 0.042774
GO:1901962 S-adenosyl-L-methionine transmembrane transport 1.12% (1/89) 7.19 0.006815 0.042774
GO:0032651 regulation of interleukin-1 beta production 1.12% (1/89) 7.19 0.006815 0.042774
GO:0032720 negative regulation of tumor necrosis factor production 1.12% (1/89) 7.19 0.006815 0.042774
GO:1903556 negative regulation of tumor necrosis factor superfamily cytokine production 1.12% (1/89) 7.19 0.006815 0.042774
GO:0002813 regulation of biosynthetic process of antibacterial peptides active against Gram-negative bacteria 1.12% (1/89) 7.19 0.006815 0.042774
GO:0006964 positive regulation of biosynthetic process of antibacterial peptides active against Gram-negative bacteria 1.12% (1/89) 7.19 0.006815 0.042774
GO:0097340 inhibition of cysteine-type endopeptidase activity 1.12% (1/89) 7.19 0.006815 0.042774
GO:0097341 zymogen inhibition 1.12% (1/89) 7.19 0.006815 0.042774
GO:0006390 mitochondrial transcription 1.12% (1/89) 7.19 0.006815 0.042774
GO:0034245 mitochondrial DNA-directed RNA polymerase complex 1.12% (1/89) 7.19 0.006815 0.042774
GO:0004831 tyrosine-tRNA ligase activity 1.12% (1/89) 7.19 0.006815 0.042774
GO:0006437 tyrosyl-tRNA aminoacylation 1.12% (1/89) 7.19 0.006815 0.042774
GO:0051351 positive regulation of ligase activity 1.12% (1/89) 7.19 0.006815 0.042774
GO:0070092 regulation of glucagon secretion 1.12% (1/89) 7.19 0.006815 0.042774
GO:0019518 L-threonine catabolic process to glycine 1.12% (1/89) 7.19 0.006815 0.042774
GO:0036041 long-chain fatty acid binding 1.12% (1/89) 7.19 0.006815 0.042774
GO:0009790 embryo development 10.11% (9/89) 1.42 0.006385 0.043833
GO:0018130 heterocycle biosynthetic process 11.24% (10/89) 1.31 0.007024 0.043922
GO:0008285 negative regulation of cell population proliferation 4.49% (4/89) 2.44 0.006444 0.04406
GO:0031966 mitochondrial membrane 4.49% (4/89) 2.36 0.007849 0.048894
GO:1900865 chloroplast RNA modification 3.37% (3/89) 2.89 0.007917 0.049135
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_243 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_104 0.007 Orthogroups with 8 Potato genotypes Compare
Sequences (89) (download table)

InterPro Domains

GO Terms

Family Terms