SOLTUB.AGRIA.G00000036353

Description : Pentatricopeptide repeat-containing protein

Gene families : OG_02_0021119 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000036353
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_130

Type	GO Term	Name	Evidence	Source
BP	GO:0000959	mitochondrial RNA metabolic process	None	Extended
BP	GO:0000963	mitochondrial RNA processing	IEA	AHRD
BP	GO:0003002	regionalization	None	Extended
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003729	mRNA binding	IEA	AHRD
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004518	nuclease activity	None	Extended
MF	GO:0004519	endonuclease activity	IEA	AHRD
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005739	mitochondrion	IEA	AHRD
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0007389	pattern specification process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008270	zinc ion binding	IEA	AHRD
BP	GO:0009451	RNA modification	None	Extended
CC	GO:0009507	chloroplast	IEA	AHRD
CC	GO:0009536	plastid	None	Extended
BP	GO:0009888	tissue development	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010051	xylem and phloem pattern formation	None	Extended
BP	GO:0010087	phloem or xylem histogenesis	IEA	AHRD
BP	GO:0010214	seed coat development	IEA	AHRD
BP	GO:0010305	leaf vascular tissue pattern formation	IEA	AHRD
BP	GO:0010467	gene expression	None	Extended
BP	GO:0010588	cotyledon vascular tissue pattern formation	IEA	AHRD
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0016553	base conversion or substitution editing	None	Extended
BP	GO:0016554	cytidine to uridine editing	IEA	AHRD
BP	GO:0016556	mRNA modification	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0031425	chloroplast RNA processing	IEA	AHRD
BP	GO:0031426	polycistronic mRNA processing	IEA	AHRD
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080156	mitochondrial mRNA modification	IEA	AHRD
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:0140053	mitochondrial gene expression	None	Extended
BP	GO:0140547	acquisition of seed longevity	IEA	AHRD
BP	GO:1900864	mitochondrial RNA modification	None	Extended
BP	GO:1900865	chloroplast RNA modification	IEA	AHRD
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000154	rRNA modification	IEP	Predict GO terms from Neighborhoods
MF	GO:0000179	rRNA (adenine-N6,N6-)-dimethyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	Predict GO terms from Neighborhoods
BP	GO:0001510	RNA methylation	IEP	Predict GO terms from Neighborhoods
MF	GO:0003727	single-stranded RNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0003916	DNA topoisomerase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0003917	DNA topoisomerase type I (single strand cut, ATP-independent) activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0006081	cellular aldehyde metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006084	acetyl-CoA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006090	pyruvate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006163	purine nucleotide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006265	DNA topological change	IEP	Predict GO terms from Neighborhoods
BP	GO:0006364	rRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0006637	acyl-CoA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006644	phospholipid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006753	nucleoside phosphate metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0008173	RNA methyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0008202	steroid metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0008649	rRNA methyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0008654	phospholipid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009116	nucleoside metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009117	nucleotide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009119	ribonucleoside metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009150	purine ribonucleotide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009240	isopentenyl diphosphate biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009259	ribonucleotide metabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0009295	nucleoid	IEP	Predict GO terms from Neighborhoods
CC	GO:0009501	amyloplast	IEP	Predict GO terms from Neighborhoods
CC	GO:0009509	chromoplast	IEP	Predict GO terms from Neighborhoods
CC	GO:0009513	etioplast	IEP	Predict GO terms from Neighborhoods
CC	GO:0009537	proplastid	IEP	Predict GO terms from Neighborhoods
BP	GO:0010239	chloroplast mRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0016072	rRNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0016125	sterol metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0016433	rRNA (adenine) methyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0019287	isopentenyl diphosphate biosynthetic process, mevalonate pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0019682	glyceraldehyde-3-phosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019693	ribose phosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0030490	maturation of SSU-rRNA	IEP	Predict GO terms from Neighborhoods
CC	GO:0030688	preribosome, small subunit precursor	IEP	Predict GO terms from Neighborhoods
BP	GO:0031167	rRNA methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0032259	methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0033865	nucleoside bisphosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0033875	ribonucleoside bisphosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0034032	purine nucleoside bisphosphate metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0034046	poly(G) binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0034470	ncRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0035383	thioester metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042254	ribosome biogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0042278	purine nucleoside metabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0042644	chloroplast nucleoid	IEP	Predict GO terms from Neighborhoods
CC	GO:0042646	plastid nucleoid	IEP	Predict GO terms from Neighborhoods
BP	GO:0043414	macromolecule methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0046085	adenosine metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046128	purine ribonucleoside metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046490	isopentenyl diphosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0055086	nucleobase-containing small molecule metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0070717	poly-purine tract binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0072521	purine-containing compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0090407	organophosphate biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0090615	mitochondrial mRNA processing	IEP	Predict GO terms from Neighborhoods
MF	GO:0140102	catalytic activity, acting on a rRNA	IEP	Predict GO terms from Neighborhoods
BP	GO:1901135	carbohydrate derivative metabolic process	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	55	72
IPR002885	Pentatricopeptide_repeat	384	417
IPR002885	Pentatricopeptide_repeat	247	280
IPR002885	Pentatricopeptide_repeat	348	381
IPR032867	DYW_dom	520	643
IPR011990	TPR-like_helical_dom_sf	222	504
IPR002885	Pentatricopeptide_repeat	244	292
IPR002885	Pentatricopeptide_repeat	345	392

External Links

No external refs found!

SOLTUB.AGRIA.G00000036353

Expression Profile

Co-expression Networks

Functional Annotation