SOLTUB.AGRIA.G00000036405

Description : ATP-dependent DNA helicase PIF1

Gene families : OG_02_0003838 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000036405
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_106

Type	GO Term	Name	Evidence	Source
BP	GO:0000002	mitochondrial genome maintenance	IEA	AHRD
MF	GO:0000166	nucleotide binding	IEA	AHRD
BP	GO:0000723	telomere maintenance	IEA	AHRD
CC	GO:0000781	chromosome, telomeric region	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	AHRD
MF	GO:0003678	DNA helicase activity	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005657	replication fork	None	Extended
CC	GO:0005739	mitochondrion	IEA	AHRD
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006275	regulation of DNA replication	None	Extended
BP	GO:0006351	DNA-templated transcription	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	IEA	AHRD
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007005	mitochondrion organization	None	Extended
MF	GO:0008094	ATP-dependent activity, acting on DNA	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
CC	GO:0009532	plastid stroma	None	Extended
CC	GO:0009570	chloroplast stroma	IEA	AHRD
BP	GO:0009987	cellular process	None	Extended
CC	GO:0016020	membrane	IEA	AHRD
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016491	oxidoreductase activity	None	Extended
MF	GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	None	Extended
MF	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	None	Extended
MF	GO:0017116	single-stranded DNA helicase activity	IEA	AHRD
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
MF	GO:0030267	glyoxylate reductase (NADP+) activity	IEA	AHRD
BP	GO:0031297	replication fork processing	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0032200	telomere organization	None	Extended
BP	GO:0032392	DNA geometric change	None	Extended
BP	GO:0032508	DNA duplex unwinding	IEA	AHRD
BP	GO:0032774	RNA biosynthetic process	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043139	5'-3' DNA helicase activity	IEA	AHRD
MF	GO:0043167	ion binding	IEA	AHRD
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043596	nuclear replication fork	IEA	AHRD
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0044806	G-quadruplex DNA unwinding	IEA	AHRD
BP	GO:0045005	DNA-templated DNA replication maintenance of fidelity	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051052	regulation of DNA metabolic process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051276	chromosome organization	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
MF	GO:0061995	ATP-dependent protein-DNA complex displacement activity	IEA	AHRD
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071103	DNA conformation change	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0071932	replication fork reversal	IEA	AHRD
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0090329	regulation of DNA-templated DNA replication	None	Extended
BP	GO:0097046	replication fork progression beyond termination site	IEA	AHRD
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
CC	GO:0098687	chromosomal region	None	Extended
BP	GO:0098781	ncRNA transcription	IEA	AHRD
MF	GO:0106345	glyoxylate reductase activity	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140083	ATP-dependent protein-DNA unloading activity	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
CC	GO:0140445	chromosome, telomeric repeat region	IEA	AHRD
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:2000621	regulation of DNA replication termination	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003747	translation release factor activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004034	aldose 1-epimerase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004694	eukaryotic translation initiation factor 2alpha kinase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004729	oxygen-dependent protoporphyrinogen oxidase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0006012	galactose metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006415	translational termination	IEP	Predict GO terms from Neighborhoods
BP	GO:0006772	thiamine metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006782	protoporphyrinogen IX biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006783	heme biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006984	ER-nucleus signaling pathway	IEP	Predict GO terms from Neighborhoods
MF	GO:0008079	translation termination factor activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009228	thiamine biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009229	thiamine diphosphate biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010384	cell wall proteoglycan metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010404	cell wall hydroxyproline-rich glycoprotein metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010405	arabinogalactan protein metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010447	response to acidic pH	IEP	Predict GO terms from Neighborhoods
BP	GO:0010930	negative regulation of auxin mediated signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0010998	regulation of translational initiation by eIF2 alpha phosphorylation	IEP	Predict GO terms from Neighborhoods
MF	GO:0016149	translation release factor activity, codon specific	IEP	Predict GO terms from Neighborhoods
MF	GO:0016857	racemase and epimerase activity, acting on carbohydrates and derivatives	IEP	Predict GO terms from Neighborhoods
BP	GO:0018131	oxazole or thiazole biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0018258	protein O-linked glycosylation via hydroxyproline	IEP	Predict GO terms from Neighborhoods
CC	GO:0031428	box C/D RNP complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0032055	negative regulation of translation in response to stress	IEP	Predict GO terms from Neighborhoods
MF	GO:0032552	deoxyribonucleotide binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0032554	purine deoxyribonucleotide binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0032558	adenyl deoxyribonucleotide binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0032564	dATP binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0034198	cellular response to amino acid starvation	IEP	Predict GO terms from Neighborhoods
BP	GO:0034309	primary alcohol biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042168	heme metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042357	thiamine diphosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042723	thiamine-containing compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042724	thiamine-containing compound biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0043555	regulation of translation in response to stress	IEP	Predict GO terms from Neighborhoods
BP	GO:0043558	regulation of translational initiation in response to stress	IEP	Predict GO terms from Neighborhoods
MF	GO:0045182	translation regulator activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0045947	negative regulation of translational initiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0046484	oxazole or thiazole metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046501	protoporphyrinogen IX metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0046975	histone methyltransferase activity (H3-K36 specific)	IEP	Predict GO terms from Neighborhoods
MF	GO:0048531	beta-1,3-galactosyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0048578	positive regulation of long-day photoperiodism, flowering	IEP	Predict GO terms from Neighborhoods
BP	GO:0052837	thiazole biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0052838	thiazole metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0061083	regulation of protein refolding	IEP	Predict GO terms from Neighborhoods
BP	GO:0061084	negative regulation of protein refolding	IEP	Predict GO terms from Neighborhoods
MF	GO:0070818	protoporphyrinogen oxidase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0071467	cellular response to pH	IEP	Predict GO terms from Neighborhoods
BP	GO:0071468	cellular response to acidic pH	IEP	Predict GO terms from Neighborhoods
BP	GO:0072755	cellular response to benomyl	IEP	Predict GO terms from Neighborhoods
BP	GO:0140467	integrated stress response signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:1901561	response to benomyl	IEP	Predict GO terms from Neighborhoods
BP	GO:1902182	shoot apical meristem development	IEP	Predict GO terms from Neighborhoods
BP	GO:1903332	regulation of protein folding	IEP	Predict GO terms from Neighborhoods
BP	GO:1903333	negative regulation of protein folding	IEP	Predict GO terms from Neighborhoods
BP	GO:1990451	cellular stress response to acidic pH	IEP	Predict GO terms from Neighborhoods
MF	GO:1990714	hydroxyproline O-galactosyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1990928	response to amino acid starvation	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR010285	DNA_helicase_pif1-like	94	435
IPR006115	6PGDH_NADP-bd	657	683
IPR027417	P-loop_NTPase	31	246
IPR036291	NAD(P)-bd_dom_sf	657	683
IPR003840	DNA_helicase_dom	487	540
IPR027417	P-loop_NTPase	227	529

External Links

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SOLTUB.AGRIA.G00000036405

Expression Profile

Co-expression Networks

Functional Annotation