SOLTUB.AGRIA.G00000036426

Description : SKP1-like protein

Gene families : OG_02_0021127 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000036426
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_194

Type	GO Term	Name	Evidence	Source
BP	GO:0000018	regulation of DNA recombination	None	Extended
BP	GO:0000082	G1/S transition of mitotic cell cycle	IEA	AHRD
BP	GO:0000086	G2/M transition of mitotic cell cycle	IEA	AHRD
CC	GO:0000151	ubiquitin ligase complex	None	Extended
BP	GO:0000226	microtubule cytoskeleton organization	IEA	AHRD
BP	GO:0000921	septin ring assembly	IEA	AHRD
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003688	DNA replication origin binding	IEA	AHRD
MF	GO:0003690	double-stranded DNA binding	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005730	nucleolus	IEA	AHRD
CC	GO:0005819	spindle	IEA	AHRD
CC	GO:0005829	cytosol	IEA	AHRD
CC	GO:0005886	plasma membrane	IEA	AHRD
BP	GO:0006417	regulation of translation	None	Extended
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006511	ubiquitin-dependent protein catabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006873	cellular ion homeostasis	None	Extended
BP	GO:0006885	regulation of pH	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007010	cytoskeleton organization	None	Extended
BP	GO:0007017	microtubule-based process	None	Extended
BP	GO:0007035	vacuolar acidification	IEA	AHRD
BP	GO:0007096	regulation of exit from mitosis	IEA	AHRD
BP	GO:0007346	regulation of mitotic cell cycle	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
CC	GO:0009524	phragmoplast	IEA	AHRD
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009890	negative regulation of biosynthetic process	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010035	response to inorganic substance	None	Extended
BP	GO:0010038	response to metal ion	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010498	proteasomal protein catabolic process	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010558	negative regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010564	regulation of cell cycle process	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010608	post-transcriptional regulation of gene expression	None	Extended
BP	GO:0010629	negative regulation of gene expression	None	Extended
CC	GO:0016020	membrane	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0017148	negative regulation of translation	None	Extended
CC	GO:0019005	SCF ubiquitin ligase complex	IEA	AHRD
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0019725	cellular homeostasis	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0019941	modification-dependent protein catabolic process	None	Extended
BP	GO:0022402	cell cycle process	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
BP	GO:0030003	cellular cation homeostasis	None	Extended
BP	GO:0030004	cellular monovalent inorganic cation homeostasis	None	Extended
BP	GO:0030163	protein catabolic process	None	Extended
BP	GO:0030641	regulation of cellular pH	None	Extended
BP	GO:0031106	septin ring organization	None	Extended
BP	GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	IEA	AHRD
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031324	negative regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031327	negative regulation of cellular biosynthetic process	None	Extended
CC	GO:0031461	cullin-RING ubiquitin ligase complex	None	Extended
CC	GO:0031518	CBF3 complex	IEA	AHRD
BP	GO:0032185	septin cytoskeleton organization	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034248	regulation of cellular amide metabolic process	None	Extended
BP	GO:0034249	negative regulation of cellular amide metabolic process	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0042592	homeostatic process	None	Extended
BP	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043254	regulation of protein-containing complex assembly	IEA	AHRD
CC	GO:0043291	RAVE complex	IEA	AHRD
BP	GO:0043412	macromolecule modification	None	Extended
MF	GO:0043565	sequence-specific DNA binding	None	Extended
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0043933	protein-containing complex organization	None	Extended
BP	GO:0044087	regulation of cellular component biogenesis	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0044770	cell cycle phase transition	None	Extended
BP	GO:0044772	mitotic cell cycle phase transition	None	Extended
BP	GO:0044839	cell cycle G2/M phase transition	None	Extended
BP	GO:0044843	cell cycle G1/S phase transition	None	Extended
BP	GO:0045116	protein neddylation	IEA	AHRD
BP	GO:0045910	negative regulation of DNA recombination	IEA	AHRD
BP	GO:0045934	negative regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0046686	response to cadmium ion	IEA	AHRD
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0048878	chemical homeostasis	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050801	ion homeostasis	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051052	regulation of DNA metabolic process	None	Extended
BP	GO:0051053	negative regulation of DNA metabolic process	None	Extended
BP	GO:0051128	regulation of cellular component organization	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051172	negative regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051246	regulation of protein metabolic process	None	Extended
BP	GO:0051248	negative regulation of protein metabolic process	None	Extended
BP	GO:0051276	chromosome organization	None	Extended
BP	GO:0051382	kinetochore assembly	IEA	AHRD
BP	GO:0051383	kinetochore organization	None	Extended
BP	GO:0051452	intracellular pH reduction	None	Extended
BP	GO:0051453	regulation of intracellular pH	None	Extended
BP	GO:0051603	proteolysis involved in protein catabolic process	None	Extended
BP	GO:0051726	regulation of cell cycle	None	Extended
BP	GO:0055067	monovalent inorganic cation homeostasis	None	Extended
BP	GO:0055080	cation homeostasis	None	Extended
BP	GO:0055082	cellular chemical homeostasis	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
MF	GO:0061630	ubiquitin protein ligase activity	IEA	AHRD
MF	GO:0061659	ubiquitin-like protein ligase activity	None	Extended
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065008	regulation of biological quality	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0070925	organelle assembly	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0098771	inorganic ion homeostasis	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
CC	GO:0140535	intracellular protein-containing complex	None	Extended
BP	GO:0140694	non-membrane-bounded organelle assembly	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901565	organonitrogen compound catabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
BP	GO:1901987	regulation of cell cycle phase transition	None	Extended
BP	GO:1901990	regulation of mitotic cell cycle phase transition	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
BP	GO:1903047	mitotic cell cycle process	None	Extended
CC	GO:1990234	transferase complex	None	Extended
MF	GO:1990837	sequence-specific double-stranded DNA binding	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2000113	negative regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2000765	regulation of cytoplasmic translation	None	Extended
BP	GO:2000766	negative regulation of cytoplasmic translation	IEA	AHRD

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Type	GO Term	Name	Evidence	Source
BP	GO:0000003	reproduction	IEP	Predict GO terms from Neighborhoods
MF	GO:0000035	acyl binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0000036	acyl carrier activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0000315	organellar large ribosomal subunit	IEP	Predict GO terms from Neighborhoods
BP	GO:0000373	Group II intron splicing	IEP	Predict GO terms from Neighborhoods
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	Predict GO terms from Neighborhoods
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	Predict GO terms from Neighborhoods
MF	GO:0003954	NADH dehydrogenase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0003955	NAD(P)H dehydrogenase (quinone) activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005504	fatty acid binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0005507	copper ion binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0005743	mitochondrial inner membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0005747	mitochondrial respiratory chain complex I	IEP	Predict GO terms from Neighborhoods
CC	GO:0005759	mitochondrial matrix	IEP	Predict GO terms from Neighborhoods
CC	GO:0005762	mitochondrial large ribosomal subunit	IEP	Predict GO terms from Neighborhoods
BP	GO:0006091	generation of precursor metabolites and energy	IEP	Predict GO terms from Neighborhoods
BP	GO:0006120	mitochondrial electron transport, NADH to ubiquinone	IEP	Predict GO terms from Neighborhoods
BP	GO:0006457	protein folding	IEP	Predict GO terms from Neighborhoods
BP	GO:0006633	fatty acid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0007005	mitochondrion organization	IEP	Predict GO terms from Neighborhoods
MF	GO:0008137	NADH dehydrogenase (ubiquinone) activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0008380	RNA splicing	IEP	Predict GO terms from Neighborhoods
MF	GO:0009055	electron transfer activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009060	aerobic respiration	IEP	Predict GO terms from Neighborhoods
BP	GO:0009106	lipoate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009107	lipoate biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009249	protein lipoylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0009453	energy taxis	IEP	Predict GO terms from Neighborhoods
BP	GO:0010257	NADH dehydrogenase complex assembly	IEP	Predict GO terms from Neighborhoods
MF	GO:0015399	primary active transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015453	oxidoreduction-driven active transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0015934	large ribosomal subunit	IEP	Predict GO terms from Neighborhoods
BP	GO:0015980	energy derivation by oxidation of organic compounds	IEP	Predict GO terms from Neighborhoods
BP	GO:0016226	iron-sulfur cluster assembly	IEP	Predict GO terms from Neighborhoods
MF	GO:0016651	oxidoreductase activity, acting on NAD(P)H	IEP	Predict GO terms from Neighborhoods
MF	GO:0016655	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	IEP	Predict GO terms from Neighborhoods
BP	GO:0018205	peptidyl-lysine modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0019646	aerobic electron transport chain	IEP	Predict GO terms from Neighborhoods
CC	GO:0019866	organelle inner membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0019954	asexual reproduction	IEP	Predict GO terms from Neighborhoods
BP	GO:0022900	electron transport chain	IEP	Predict GO terms from Neighborhoods
BP	GO:0022904	respiratory electron transport chain	IEP	Predict GO terms from Neighborhoods
CC	GO:0030964	NADH dehydrogenase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0031163	metallo-sulfur cluster assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0031288	sorocarp morphogenesis	IEP	Predict GO terms from Neighborhoods
MF	GO:0031406	carboxylic acid binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0031966	mitochondrial membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0031974	membrane-enclosed lumen	IEP	Predict GO terms from Neighborhoods
BP	GO:0032981	mitochondrial respiratory chain complex I assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0033108	mitochondrial respiratory chain complex assembly	IEP	Predict GO terms from Neighborhoods
MF	GO:0033293	monocarboxylic acid binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0040011	locomotion	IEP	Predict GO terms from Neighborhoods
BP	GO:0042026	protein refolding	IEP	Predict GO terms from Neighborhoods
BP	GO:0042330	taxis	IEP	Predict GO terms from Neighborhoods
BP	GO:0042331	phototaxis	IEP	Predict GO terms from Neighborhoods
MF	GO:0043021	ribonucleoprotein complex binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0043023	ribosomal large subunit binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0043168	anion binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0043169	cation binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0043233	organelle lumen	IEP	Predict GO terms from Neighborhoods
BP	GO:0044272	sulfur compound biosynthetic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0044391	ribosomal subunit	IEP	Predict GO terms from Neighborhoods
BP	GO:0044571	[2Fe-2S] cluster assembly	IEP	Predict GO terms from Neighborhoods
MF	GO:0044620	ACP phosphopantetheine attachment site binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0045271	respiratory chain complex I	IEP	Predict GO terms from Neighborhoods
BP	GO:0045333	cellular respiration	IEP	Predict GO terms from Neighborhoods
MF	GO:0046872	metal ion binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0046914	transition metal ion binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0046956	positive phototaxis	IEP	Predict GO terms from Neighborhoods
MF	GO:0050136	NADH dehydrogenase (quinone) activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0050897	cobalt ion binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0051082	unfolded protein binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0051087	chaperone binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0051117	ATPase binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0051192	prosthetic group binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0051604	protein maturation	IEP	Predict GO terms from Neighborhoods
BP	GO:0052128	positive energy taxis	IEP	Predict GO terms from Neighborhoods
CC	GO:0070013	intracellular organelle lumen	IEP	Predict GO terms from Neighborhoods
BP	GO:0090069	regulation of ribosome biogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0090071	negative regulation of ribosome biogenesis	IEP	Predict GO terms from Neighborhoods
CC	GO:0098798	mitochondrial protein-containing complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0098800	inner mitochondrial membrane protein complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0098803	respiratory chain complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0099128	mitochondrial iron-sulfur cluster assembly complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0140104	molecular carrier activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0140414	phosphopantetheine-dependent carrier activity	IEP	Predict GO terms from Neighborhoods
CC	GO:1902495	transmembrane transporter complex	IEP	Predict GO terms from Neighborhoods
CC	GO:1990204	oxidoreductase complex	IEP	Predict GO terms from Neighborhoods
CC	GO:1990351	transporter complex	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR016073	Skp1_comp_POZ	12	68
IPR011333	SKP1/BTB/POZ_sf	12	69
IPR016072	Skp1_comp_dimer	107	153
IPR036296	SKP1-like_dim_sf	78	152

External Links

No external refs found!

SOLTUB.AGRIA.G00000036426

Expression Profile

Co-expression Networks

Functional Annotation