Coexpression cluster: Cluster_194 (HCCA Clusters (HRR 50 & PCC 0.5))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0006457 protein folding 25.0% (28/112) 4.85 0.0 0.0
GO:0051082 unfolded protein binding 20.54% (23/112) 5.33 0.0 0.0
GO:0009408 response to heat 30.36% (34/112) 3.51 0.0 0.0
GO:0043621 protein self-association 21.43% (24/112) 4.06 0.0 0.0
GO:0045471 response to ethanol 13.39% (15/112) 5.57 0.0 0.0
GO:0042542 response to hydrogen peroxide 18.75% (21/112) 4.18 0.0 0.0
GO:0046685 response to arsenic-containing substance 12.5% (14/112) 5.67 0.0 0.0
GO:0051259 protein complex oligomerization 17.86% (20/112) 4.21 0.0 0.0
GO:0046688 response to copper ion 12.5% (14/112) 5.4 0.0 0.0
GO:0046686 response to cadmium ion 22.32% (25/112) 3.26 0.0 0.0
GO:0009266 response to temperature stimulus 33.04% (37/112) 2.36 0.0 0.0
GO:0000302 response to reactive oxygen species 20.54% (23/112) 3.36 0.0 0.0
GO:0010035 response to inorganic substance 38.39% (43/112) 1.97 0.0 0.0
GO:0050821 protein stabilization 12.5% (14/112) 4.34 0.0 0.0
GO:0010038 response to metal ion 25.0% (28/112) 2.57 0.0 0.0
GO:0006979 response to oxidative stress 23.21% (26/112) 2.52 0.0 0.0
GO:0031647 regulation of protein stability 13.39% (15/112) 3.76 0.0 0.0
GO:0065003 protein-containing complex assembly 20.54% (23/112) 2.56 0.0 0.0
GO:0101031 chaperone complex 7.14% (8/112) 5.56 0.0 0.0
GO:0043933 protein-containing complex organization 21.43% (24/112) 2.42 0.0 0.0
GO:0010286 heat acclimation 10.71% (12/112) 3.84 0.0 0.0
GO:0006950 response to stress 57.14% (64/112) 1.03 0.0 0.0
GO:0009628 response to abiotic stimulus 44.64% (50/112) 1.22 0.0 0.0
GO:0000427 plastid-encoded plastid RNA polymerase complex 4.46% (5/112) 6.38 0.0 0.0
GO:0042221 response to chemical 50.0% (56/112) 1.04 0.0 0.0
GO:0009651 response to salt stress 19.64% (22/112) 2.05 0.0 1e-06
GO:0050896 response to stimulus 65.18% (73/112) 0.75 0.0 1e-06
GO:0006970 response to osmotic stress 21.43% (24/112) 1.89 0.0 1e-06
GO:0022607 cellular component assembly 22.32% (25/112) 1.82 0.0 2e-06
GO:1901700 response to oxygen-containing compound 36.61% (41/112) 1.16 0.0 1.1e-05
GO:0010319 stromule 4.46% (5/112) 4.81 1e-06 6.1e-05
GO:0016043 cellular component organization 34.82% (39/112) 1.09 1e-06 8.5e-05
GO:0009658 chloroplast organization 8.93% (10/112) 2.81 2e-06 0.000103
GO:0042644 chloroplast nucleoid 4.46% (5/112) 4.64 2e-06 0.000105
GO:0042646 plastid nucleoid 4.46% (5/112) 4.5 3e-06 0.000159
GO:0009941 chloroplast envelope 10.71% (12/112) 2.39 3e-06 0.000173
GO:0032991 protein-containing complex 28.57% (32/112) 1.21 3e-06 0.000178
GO:0009657 plastid organization 8.93% (10/112) 2.62 6e-06 0.000277
GO:0009526 plastid envelope 10.71% (12/112) 2.31 6e-06 0.000282
GO:0071840 cellular component organization or biogenesis 34.82% (39/112) 1.0 7e-06 0.000326
GO:0097305 response to alcohol 16.07% (18/112) 1.72 8e-06 0.000373
GO:0000428 DNA-directed RNA polymerase complex 4.46% (5/112) 4.18 9e-06 0.000393
GO:0009570 chloroplast stroma 10.71% (12/112) 2.22 1.1e-05 0.00047
GO:0030880 RNA polymerase complex 4.46% (5/112) 4.05 1.4e-05 0.00058
GO:0009532 plastid stroma 10.71% (12/112) 2.17 1.6e-05 0.000648
GO:0031967 organelle envelope 11.61% (13/112) 2.03 1.9e-05 0.000752
GO:0031975 envelope 11.61% (13/112) 2.03 1.9e-05 0.000752
GO:0009295 nucleoid 4.46% (5/112) 3.9 2.3e-05 0.000898
GO:0005737 cytoplasm 22.32% (25/112) 1.25 3.5e-05 0.00133
GO:0042026 protein refolding 3.57% (4/112) 4.42 3.8e-05 0.001422
GO:0003953 NAD+ nucleosidase activity 4.46% (5/112) 3.71 4.2e-05 0.001564
GO:0005488 binding 68.75% (77/112) 0.46 4.6e-05 0.001679
GO:0005575 cellular_component 78.57% (88/112) 0.36 5.7e-05 0.002034
GO:0005515 protein binding 56.25% (63/112) 0.57 5.9e-05 0.002064
GO:0110165 cellular anatomical entity 77.68% (87/112) 0.37 6.5e-05 0.002238
GO:0042802 identical protein binding 18.75% (21/112) 1.28 0.000118 0.003973
GO:0016465 chaperonin ATPase complex 1.79% (2/112) 6.45 0.000225 0.00731
GO:1990220 GroEL-GroES complex 1.79% (2/112) 6.45 0.000225 0.00731
GO:0034620 cellular response to unfolded protein 2.68% (3/112) 4.57 0.000278 0.008732
GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds 4.46% (5/112) 3.14 0.000274 0.008747
GO:0065008 regulation of biological quality 23.21% (26/112) 1.01 0.000363 0.011206
GO:0003674 molecular_function 75.0% (84/112) 0.33 0.000508 0.015415
GO:0009987 cellular process 67.86% (76/112) 0.38 0.000556 0.016607
GO:0010033 response to organic substance 31.25% (35/112) 0.78 0.00057 0.016776
GO:0031904 endosome lumen 1.79% (2/112) 5.75 0.000622 0.018001
GO:0140535 intracellular protein-containing complex 8.93% (10/112) 1.78 0.000693 0.019772
GO:0042170 plastid membrane 8.04% (9/112) 1.9 0.000718 0.020167
GO:0016730 oxidoreductase activity, acting on iron-sulfur proteins as donors 1.79% (2/112) 5.54 0.000834 0.023077
GO:0008150 biological_process 75.89% (85/112) 0.3 0.000912 0.024884
GO:0061077 chaperone-mediated protein folding 3.57% (4/112) 3.13 0.001191 0.031579
GO:0035967 cellular response to topologically incorrect protein 2.68% (3/112) 3.86 0.001183 0.031799
GO:0043067 regulation of programmed cell death 8.93% (10/112) 1.66 0.001306 0.034134
GO:0010941 regulation of cell death 9.82% (11/112) 1.55 0.001417 0.036536
GO:0065007 biological regulation 50.89% (57/112) 0.47 0.001472 0.037447
GO:0034605 cellular response to heat 4.46% (5/112) 2.59 0.001503 0.037722
GO:0030521 androgen receptor signaling pathway 1.79% (2/112) 5.05 0.001649 0.040834
GO:0061695 transferase complex, transferring phosphorus-containing groups 4.46% (5/112) 2.54 0.00177 0.04326
GO:1901654 response to ketone 3.57% (4/112) 2.94 0.00191 0.046077
GO:0043068 positive regulation of programmed cell death 5.36% (6/112) 2.2 0.00204 0.048601
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_212 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_265 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_288 0.01 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_21 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_25 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_82 0.024 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_119 0.012 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_191 0.007 Orthogroups with 8 Potato genotypes Compare
Sequences (112) (download table)

InterPro Domains

GO Terms

Family Terms