SOLTUB.AGRIA.G00000036551

Description : DNA glycosylase

Gene families : OG_02_0011131 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000036551
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_158

Type	GO Term	Name	Evidence	Source
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003906	DNA-(apurinic or apyrimidinic site) endonuclease activity	IEA	AHRD
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	None	Extended
BP	GO:0006284	base-excision repair	IEA	AHRD
BP	GO:0006304	DNA modification	None	Extended
BP	GO:0006305	DNA alkylation	None	Extended
BP	GO:0006306	DNA methylation	IEA	AHRD
BP	GO:0006349	regulation of gene expression by genomic imprinting	IEA	AHRD
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006952	defense response	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0007275	multicellular organism development	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009620	response to fungus	None	Extended
BP	GO:0009790	embryo development	None	Extended
BP	GO:0009793	embryo development ending in seed dormancy	IEA	AHRD
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010216	maintenance of DNA methylation	IEA	AHRD
BP	GO:0010468	regulation of gene expression	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	None	Extended
MF	GO:0016799	hydrolase activity, hydrolyzing N-glycosyl compounds	None	Extended
MF	GO:0016829	lyase activity	IEA	AHRD
MF	GO:0019104	DNA N-glycosylase activity	IEA	AHRD
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0031936	obsolete negative regulation of chromatin silencing	IEA	AHRD
BP	GO:0032259	methylation	None	Extended
MF	GO:0032451	demethylase activity	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0035510	DNA dealkylation	None	Extended
MF	GO:0035514	DNA demethylase activity	None	Extended
BP	GO:0040029	epigenetic regulation of gene expression	None	Extended
CC	GO:0043076	megasporocyte nucleus	None	Extended
CC	GO:0043078	polar nucleus	IEA	AHRD
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043414	macromolecule methylation	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
BP	GO:0044728	DNA methylation or demethylation	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048229	gametophyte development	IEA	AHRD
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050832	defense response to fungus	IEA	AHRD
BP	GO:0050896	response to stimulus	None	Extended
MF	GO:0051536	iron-sulfur cluster binding	IEA	AHRD
MF	GO:0051540	metal cluster binding	None	Extended
BP	GO:0051707	response to other organism	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
MF	GO:0051747	cytosine C-5 DNA demethylase activity	IEA	AHRD
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070988	demethylation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080111	DNA demethylation	IEA	AHRD
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0098542	defense response to other organism	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0002218	activation of innate immune response	IEP	Predict GO terms from Neighborhoods
BP	GO:0002682	regulation of immune system process	IEP	Predict GO terms from Neighborhoods
BP	GO:0002757	immune response-activating signal transduction	IEP	Predict GO terms from Neighborhoods
BP	GO:0002758	innate immune response-activating signal transduction	IEP	Predict GO terms from Neighborhoods
BP	GO:0002831	regulation of response to biotic stimulus	IEP	Predict GO terms from Neighborhoods
MF	GO:0003980	UDP-glucose:glycoprotein glucosyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005509	calcium ion binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0005537	mannose binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0005635	nuclear envelope	IEP	Predict GO terms from Neighborhoods
CC	GO:0005788	endoplasmic reticulum lumen	IEP	Predict GO terms from Neighborhoods
CC	GO:0005791	rough endoplasmic reticulum	IEP	Predict GO terms from Neighborhoods
BP	GO:0006011	UDP-glucose metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006486	protein glycosylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006487	protein N-linked glycosylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006491	N-glycan processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0006515	protein quality control for misfolded or incompletely synthesized proteins	IEP	Predict GO terms from Neighborhoods
BP	GO:0009100	glycoprotein metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009225	nucleotide-sugar metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009608	response to symbiont	IEP	Predict GO terms from Neighborhoods
BP	GO:0010089	xylem development	IEP	Predict GO terms from Neighborhoods
MF	GO:0016835	carbon-oxygen lyase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0018196	peptidyl-asparagine modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0018279	protein N-linked glycosylation via asparagine	IEP	Predict GO terms from Neighborhoods
MF	GO:0030246	carbohydrate binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0031347	regulation of defense response	IEP	Predict GO terms from Neighborhoods
BP	GO:0032101	regulation of response to external stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0034976	response to endoplasmic reticulum stress	IEP	Predict GO terms from Neighborhoods
MF	GO:0035251	UDP-glucosyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0036503	ERAD pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0043413	macromolecule glycosylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0046283	anthocyanin-containing compound metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0048029	monosaccharide binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0048584	positive regulation of response to stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0050776	regulation of immune response	IEP	Predict GO terms from Neighborhoods
MF	GO:0051082	unfolded protein binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0051539	4 iron, 4 sulfur cluster binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0051787	misfolded protein binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0070085	glycosylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0071712	ER-associated misfolded protein catabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0071944	cell periphery	IEP	Predict GO terms from Neighborhoods
BP	GO:0080134	regulation of response to stress	IEP	Predict GO terms from Neighborhoods
BP	GO:0097359	UDP-glucosylation	IEP	Predict GO terms from Neighborhoods
MF	GO:0140078	class I DNA-(apurinic or apyrimidinic site) endonuclease activity	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR028924	Perm-CXXC	1680	1711
IPR028925	RRM_DME	1714	1814
IPR011257	DNA_glycosylase	882	1461

External Links

No external refs found!

SOLTUB.AGRIA.G00000036551

Expression Profile

Co-expression Networks

Functional Annotation