SOLTUB.AGRIA.G00000037033


Description : 40s ribosomal protein s18


Gene families : OG_02_0001224 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000037033
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_37

Target Alias Description ECC score Gene Family Method Actions
SOLTUB.AGRIA.G00000010156 No alias 40s ribosomal protein s18 0.09 Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000022967 No alias 40s ribosomal protein s18 0.08 Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000010156 No alias 40s ribosomal protein s18 0.09 Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000022967 No alias 40s ribosomal protein s18 0.08 Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000010156 No alias 40s ribosomal protein s18 0.09 Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000022967 No alias 40s ribosomal protein s18 0.08 Orthogroups with 8 Potato genotypes

Type GO Term Name Evidence Source
CC GO:0000228 nuclear chromosome IEA AHRD
BP GO:0000447 endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA AHRD
BP GO:0002181 cytoplasmic translation IEA AHRD
MF GO:0003729 mRNA binding IEA AHRD
MF GO:0003735 structural constituent of ribosome IEA AHRD
CC GO:0005618 cell wall IEA AHRD
CC GO:0005730 nucleolus IEA AHRD
CC GO:0005774 vacuolar membrane IEA AHRD
CC GO:0005886 plasma membrane IEA AHRD
BP GO:0006413 translational initiation IEA AHRD
CC GO:0009506 plasmodesma IEA AHRD
CC GO:0014069 postsynaptic density IEA AHRD
MF GO:0019843 rRNA binding IEA AHRD
MF GO:0019901 protein kinase binding IEA AHRD
CC GO:0022627 cytosolic small ribosomal subunit IEA AHRD
BP GO:0051726 regulation of cell cycle IEA AHRD
CC GO:0098556 cytoplasmic side of rough endoplasmic reticulum membrane IEA AHRD
Type GO Term Name Evidence Source
BP GO:0000027 ribosomal large subunit assembly IEP Predict GO terms from Neighborhoods
MF GO:0000171 ribonuclease MRP activity IEP Predict GO terms from Neighborhoods
CC GO:0000172 ribonuclease MRP complex IEP Predict GO terms from Neighborhoods
CC GO:0000327 lytic vacuole within protein storage vacuole IEP Predict GO terms from Neighborhoods
BP GO:0000461 endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Predict GO terms from Neighborhoods
BP GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Predict GO terms from Neighborhoods
BP GO:0000470 maturation of LSU-rRNA IEP Predict GO terms from Neighborhoods
BP GO:0001843 neural tube closure IEP Predict GO terms from Neighborhoods
BP GO:0002182 cytoplasmic translational elongation IEP Predict GO terms from Neighborhoods
BP GO:0002262 myeloid cell homeostasis IEP Predict GO terms from Neighborhoods
MF GO:0003756 protein disulfide isomerase activity IEP Predict GO terms from Neighborhoods
MF GO:0004707 MAP kinase activity IEP Predict GO terms from Neighborhoods
MF GO:0004857 enzyme inhibitor activity IEP Predict GO terms from Neighborhoods
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP Predict GO terms from Neighborhoods
CC GO:0005773 vacuole IEP Predict GO terms from Neighborhoods
CC GO:0005788 endoplasmic reticulum lumen IEP Predict GO terms from Neighborhoods
CC GO:0005791 rough endoplasmic reticulum IEP Predict GO terms from Neighborhoods
CC GO:0005840 ribosome IEP Predict GO terms from Neighborhoods
CC GO:0005844 polysome IEP Predict GO terms from Neighborhoods
BP GO:0006364 rRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0006396 RNA processing IEP Predict GO terms from Neighborhoods
BP GO:0006414 translational elongation IEP Predict GO terms from Neighborhoods
BP GO:0006417 regulation of translation IEP Predict GO terms from Neighborhoods
BP GO:0006471 protein ADP-ribosylation IEP Predict GO terms from Neighborhoods
BP GO:0006886 intracellular protein transport IEP Predict GO terms from Neighborhoods
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP Predict GO terms from Neighborhoods
BP GO:0006914 autophagy IEP Predict GO terms from Neighborhoods
BP GO:0007420 brain development IEP Predict GO terms from Neighborhoods
MF GO:0008097 5S rRNA binding IEP Predict GO terms from Neighborhoods
BP GO:0008284 positive regulation of cell population proliferation IEP Predict GO terms from Neighborhoods
BP GO:0009306 protein secretion IEP Predict GO terms from Neighborhoods
BP GO:0009790 embryo development IEP Predict GO terms from Neighborhoods
BP GO:0009792 embryo development ending in birth or egg hatching IEP Predict GO terms from Neighborhoods
BP GO:0009895 negative regulation of catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009967 positive regulation of signal transduction IEP Predict GO terms from Neighborhoods
BP GO:0010205 photoinhibition IEP Predict GO terms from Neighborhoods
BP GO:0010628 positive regulation of gene expression IEP Predict GO terms from Neighborhoods
BP GO:0010647 positive regulation of cell communication IEP Predict GO terms from Neighborhoods
BP GO:0010941 regulation of cell death IEP Predict GO terms from Neighborhoods
BP GO:0010942 positive regulation of cell death IEP Predict GO terms from Neighborhoods
BP GO:0015031 protein transport IEP Predict GO terms from Neighborhoods
CC GO:0015934 large ribosomal subunit IEP Predict GO terms from Neighborhoods
MF GO:0016004 phospholipase activator activity IEP Predict GO terms from Neighborhoods
BP GO:0016072 rRNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0016236 macroautophagy IEP Predict GO terms from Neighborhoods
MF GO:0016860 intramolecular oxidoreductase activity IEP Predict GO terms from Neighborhoods
MF GO:0016864 intramolecular oxidoreductase activity, transposing S-S bonds IEP Predict GO terms from Neighborhoods
BP GO:0019222 regulation of metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0020027 hemoglobin metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predict GO terms from Neighborhoods
CC GO:0022625 cytosolic large ribosomal subunit IEP Predict GO terms from Neighborhoods
BP GO:0023056 positive regulation of signaling IEP Predict GO terms from Neighborhoods
CC GO:0030008 TRAPP complex IEP Predict GO terms from Neighborhoods
BP GO:0030162 regulation of proteolysis IEP Predict GO terms from Neighborhoods
MF GO:0030234 enzyme regulator activity IEP Predict GO terms from Neighborhoods
CC GO:0030684 preribosome IEP Predict GO terms from Neighborhoods
CC GO:0030687 preribosome, large subunit precursor IEP Predict GO terms from Neighborhoods
BP GO:0031001 response to brefeldin A IEP Predict GO terms from Neighborhoods
BP GO:0031100 animal organ regeneration IEP Predict GO terms from Neighborhoods
BP GO:0031125 rRNA 3'-end processing IEP Predict GO terms from Neighborhoods
CC GO:0031252 cell leading edge IEP Predict GO terms from Neighborhoods
BP GO:0031330 negative regulation of cellular catabolic process IEP Predict GO terms from Neighborhoods
MF GO:0031369 translation initiation factor binding IEP Predict GO terms from Neighborhoods
BP GO:0031396 regulation of protein ubiquitination IEP Predict GO terms from Neighborhoods
BP GO:0031397 negative regulation of protein ubiquitination IEP Predict GO terms from Neighborhoods
BP GO:0031399 regulation of protein modification process IEP Predict GO terms from Neighborhoods
BP GO:0031400 negative regulation of protein modification process IEP Predict GO terms from Neighborhoods
BP GO:0031647 regulation of protein stability IEP Predict GO terms from Neighborhoods
CC GO:0031672 A band IEP Predict GO terms from Neighborhoods
CC GO:0032040 small-subunit processome IEP Predict GO terms from Neighborhoods
BP GO:0032092 positive regulation of protein binding IEP Predict GO terms from Neighborhoods
BP GO:0032435 negative regulation of proteasomal ubiquitin-dependent protein catabolic process IEP Predict GO terms from Neighborhoods
CC GO:0033106 cis-Golgi network membrane IEP Predict GO terms from Neighborhoods
BP GO:0034101 erythrocyte homeostasis IEP Predict GO terms from Neighborhoods
BP GO:0034250 positive regulation of cellular amide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0034470 ncRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0034660 ncRNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0034975 protein folding in endoplasmic reticulum IEP Predict GO terms from Neighborhoods
BP GO:0035148 tube formation IEP Predict GO terms from Neighborhoods
BP GO:0035264 multicellular organism growth IEP Predict GO terms from Neighborhoods
BP GO:0035592 establishment of protein localization to extracellular region IEP Predict GO terms from Neighborhoods
CC GO:0035770 ribonucleoprotein granule IEP Predict GO terms from Neighborhoods
CC GO:0036464 cytoplasmic ribonucleoprotein granule IEP Predict GO terms from Neighborhoods
BP GO:0040002 collagen and cuticulin-based cuticle development IEP Predict GO terms from Neighborhoods
BP GO:0042127 regulation of cell population proliferation IEP Predict GO terms from Neighborhoods
BP GO:0042273 ribosomal large subunit biogenesis IEP Predict GO terms from Neighborhoods
BP GO:0042274 ribosomal small subunit biogenesis IEP Predict GO terms from Neighborhoods
BP GO:0042338 cuticle development involved in collagen and cuticulin-based cuticle molting cycle IEP Predict GO terms from Neighborhoods
BP GO:0042541 hemoglobin biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0042548 regulation of photosynthesis, light reaction IEP Predict GO terms from Neighborhoods
CC GO:0042788 polysomal ribosome IEP Predict GO terms from Neighborhoods
MF GO:0042975 peroxisome proliferator activated receptor binding IEP Predict GO terms from Neighborhoods
BP GO:0042981 regulation of apoptotic process IEP Predict GO terms from Neighborhoods
BP GO:0043009 chordate embryonic development IEP Predict GO terms from Neighborhoods
BP GO:0043065 positive regulation of apoptotic process IEP Predict GO terms from Neighborhoods
BP GO:0043067 regulation of programmed cell death IEP Predict GO terms from Neighborhoods
BP GO:0043068 positive regulation of programmed cell death IEP Predict GO terms from Neighborhoods
BP GO:0043086 negative regulation of catalytic activity IEP Predict GO terms from Neighborhoods
BP GO:0043155 negative regulation of photosynthesis, light reaction IEP Predict GO terms from Neighborhoods
BP GO:0043628 small regulatory ncRNA 3'-end processing IEP Predict GO terms from Neighborhoods
BP GO:0044085 cellular component biogenesis IEP Predict GO terms from Neighborhoods
BP GO:0044092 negative regulation of molecular function IEP Predict GO terms from Neighborhoods
CC GO:0045169 fusome IEP Predict GO terms from Neighborhoods
BP GO:0045184 establishment of protein localization IEP Predict GO terms from Neighborhoods
CC GO:0045202 synapse IEP Predict GO terms from Neighborhoods
BP GO:0045471 response to ethanol IEP Predict GO terms from Neighborhoods
BP GO:0045727 positive regulation of translation IEP Predict GO terms from Neighborhoods
BP GO:0045861 negative regulation of proteolysis IEP Predict GO terms from Neighborhoods
BP GO:0046677 response to antibiotic IEP Predict GO terms from Neighborhoods
BP GO:0046907 intracellular transport IEP Predict GO terms from Neighborhoods
MF GO:0047485 protein N-terminus binding IEP Predict GO terms from Neighborhoods
MF GO:0048027 mRNA 5'-UTR binding IEP Predict GO terms from Neighborhoods
BP GO:0048513 animal organ development IEP Predict GO terms from Neighborhoods
BP GO:0048518 positive regulation of biological process IEP Predict GO terms from Neighborhoods
BP GO:0048522 positive regulation of cellular process IEP Predict GO terms from Neighborhoods
BP GO:0048599 oocyte development IEP Predict GO terms from Neighborhoods
BP GO:0048856 anatomical structure development IEP Predict GO terms from Neighborhoods
BP GO:0050790 regulation of catalytic activity IEP Predict GO terms from Neighborhoods
BP GO:0050821 protein stabilization IEP Predict GO terms from Neighborhoods
BP GO:0051246 regulation of protein metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0051248 negative regulation of protein metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0051338 regulation of transferase activity IEP Predict GO terms from Neighborhoods
BP GO:0051348 negative regulation of transferase activity IEP Predict GO terms from Neighborhoods
BP GO:0051438 regulation of ubiquitin-protein transferase activity IEP Predict GO terms from Neighborhoods
BP GO:0051444 negative regulation of ubiquitin-protein transferase activity IEP Predict GO terms from Neighborhoods
MF GO:0055105 ubiquitin-protein transferase inhibitor activity IEP Predict GO terms from Neighborhoods
MF GO:0055106 ubiquitin-protein transferase regulator activity IEP Predict GO terms from Neighborhoods
MF GO:0060229 lipase activator activity IEP Predict GO terms from Neighborhoods
BP GO:0060606 tube closure IEP Predict GO terms from Neighborhoods
BP GO:0061919 process utilizing autophagic mechanism IEP Predict GO terms from Neighborhoods
BP GO:0065009 regulation of molecular function IEP Predict GO terms from Neighborhoods
CC GO:0070732 spindle envelope IEP Predict GO terms from Neighborhoods
BP GO:0071692 protein localization to extracellular region IEP Predict GO terms from Neighborhoods
BP GO:0071840 cellular component organization or biogenesis IEP Predict GO terms from Neighborhoods
MF GO:0097371 MDM2/MDM4 family protein binding IEP Predict GO terms from Neighborhoods
BP GO:0097421 liver regeneration IEP Predict GO terms from Neighborhoods
MF GO:0098772 molecular function regulator activity IEP Predict GO terms from Neighborhoods
BP GO:1900063 regulation of peroxisome organization IEP Predict GO terms from Neighborhoods
BP GO:1900064 positive regulation of peroxisome organization IEP Predict GO terms from Neighborhoods
BP GO:1901796 regulation of signal transduction by p53 class mediator IEP Predict GO terms from Neighborhoods
BP GO:1901798 positive regulation of signal transduction by p53 class mediator IEP Predict GO terms from Neighborhoods
BP GO:1901799 negative regulation of proteasomal protein catabolic process IEP Predict GO terms from Neighborhoods
BP GO:1902253 regulation of intrinsic apoptotic signaling pathway by p53 class mediator IEP Predict GO terms from Neighborhoods
BP GO:1902255 positive regulation of intrinsic apoptotic signaling pathway by p53 class mediator IEP Predict GO terms from Neighborhoods
BP GO:1902531 regulation of intracellular signal transduction IEP Predict GO terms from Neighborhoods
BP GO:1902533 positive regulation of intracellular signal transduction IEP Predict GO terms from Neighborhoods
CC GO:1902555 endoribonuclease complex IEP Predict GO terms from Neighborhoods
BP GO:1903050 regulation of proteolysis involved in protein catabolic process IEP Predict GO terms from Neighborhoods
BP GO:1903051 negative regulation of proteolysis involved in protein catabolic process IEP Predict GO terms from Neighborhoods
BP GO:1903320 regulation of protein modification by small protein conjugation or removal IEP Predict GO terms from Neighborhoods
BP GO:1903321 negative regulation of protein modification by small protein conjugation or removal IEP Predict GO terms from Neighborhoods
BP GO:1904666 regulation of ubiquitin protein ligase activity IEP Predict GO terms from Neighborhoods
BP GO:1904667 negative regulation of ubiquitin protein ligase activity IEP Predict GO terms from Neighborhoods
BP GO:1904748 regulation of apoptotic process involved in development IEP Predict GO terms from Neighborhoods
BP GO:1905156 negative regulation of photosynthesis IEP Predict GO terms from Neighborhoods
CC GO:1905348 endonuclease complex IEP Predict GO terms from Neighborhoods
CC GO:1990070 TRAPPI protein complex IEP Predict GO terms from Neighborhoods
CC GO:1990071 TRAPPII protein complex IEP Predict GO terms from Neighborhoods
CC GO:1990072 TRAPPIII protein complex IEP Predict GO terms from Neighborhoods
MF GO:1990948 ubiquitin ligase inhibitor activity IEP Predict GO terms from Neighborhoods
BP GO:2000058 regulation of ubiquitin-dependent protein catabolic process IEP Predict GO terms from Neighborhoods
BP GO:2000059 negative regulation of ubiquitin-dependent protein catabolic process IEP Predict GO terms from Neighborhoods
BP GO:2000434 regulation of protein neddylation IEP Predict GO terms from Neighborhoods
BP GO:2000435 negative regulation of protein neddylation IEP Predict GO terms from Neighborhoods
BP GO:2001233 regulation of apoptotic signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:2001235 positive regulation of apoptotic signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:2001242 regulation of intrinsic apoptotic signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:2001244 positive regulation of intrinsic apoptotic signaling pathway IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR001892 Ribosomal_S13 14 142
IPR010979 Ribosomal_S13-like_H2TH 13 152
No external refs found!