SOLTUB.AGRIA.G00000003728

Description : Sigma factor binding protein 1

Gene families : OG_02_0022017 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000003728
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_161

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	AHRD
BP	GO:0006355	regulation of DNA-templated transcription	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006952	defense response	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009416	response to light stimulus	None	Extended
CC	GO:0009507	chloroplast	IEA	AHRD
CC	GO:0009536	plastid	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009617	response to bacterium	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0042742	defense response to bacterium	IEA	AHRD
BP	GO:0043207	response to external biotic stimulus	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044093	positive regulation of molecular function	None	Extended
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051090	regulation of DNA-binding transcription factor activity	None	Extended
BP	GO:0051091	positive regulation of DNA-binding transcription factor activity	IEA	AHRD
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051707	response to other organism	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065009	regulation of molecular function	None	Extended
BP	GO:0071214	cellular response to abiotic stimulus	None	Extended
BP	GO:0071478	cellular response to radiation	None	Extended
BP	GO:0071482	cellular response to light stimulus	IEA	AHRD
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0098542	defense response to other organism	None	Extended
BP	GO:0104004	cellular response to environmental stimulus	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000302	response to reactive oxygen species	IEP	Predict GO terms from Neighborhoods
MF	GO:0000976	transcription cis-regulatory region binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0001067	transcription regulatory region nucleic acid binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0001101	response to acid chemical	IEP	Predict GO terms from Neighborhoods
BP	GO:0001763	morphogenesis of a branching structure	IEP	Predict GO terms from Neighborhoods
BP	GO:0002218	activation of innate immune response	IEP	Predict GO terms from Neighborhoods
BP	GO:0002252	immune effector process	IEP	Predict GO terms from Neighborhoods
BP	GO:0002253	activation of immune response	IEP	Predict GO terms from Neighborhoods
BP	GO:0002376	immune system process	IEP	Predict GO terms from Neighborhoods
BP	GO:0002682	regulation of immune system process	IEP	Predict GO terms from Neighborhoods
BP	GO:0002684	positive regulation of immune system process	IEP	Predict GO terms from Neighborhoods
BP	GO:0002831	regulation of response to biotic stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0002833	positive regulation of response to biotic stimulus	IEP	Predict GO terms from Neighborhoods
MF	GO:0003677	DNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0003690	double-stranded DNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0003700	DNA-binding transcription factor activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005743	mitochondrial inner membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0006790	sulfur compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006928	obsolete movement of cell or subcellular component	IEP	Predict GO terms from Neighborhoods
BP	GO:0006979	response to oxidative stress	IEP	Predict GO terms from Neighborhoods
BP	GO:0007165	signal transduction	IEP	Predict GO terms from Neighborhoods
BP	GO:0007409	axonogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0008016	regulation of heart contraction	IEP	Predict GO terms from Neighborhoods
BP	GO:0009060	aerobic respiration	IEP	Predict GO terms from Neighborhoods
BP	GO:0009266	response to temperature stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0009408	response to heat	IEP	Predict GO terms from Neighborhoods
BP	GO:0009409	response to cold	IEP	Predict GO terms from Neighborhoods
BP	GO:0009414	response to water deprivation	IEP	Predict GO terms from Neighborhoods
BP	GO:0009415	response to water	IEP	Predict GO terms from Neighborhoods
BP	GO:0009611	response to wounding	IEP	Predict GO terms from Neighborhoods
BP	GO:0009620	response to fungus	IEP	Predict GO terms from Neighborhoods
BP	GO:0009624	response to nematode	IEP	Predict GO terms from Neighborhoods
BP	GO:0009642	response to light intensity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009644	response to high light intensity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009725	response to hormone	IEP	Predict GO terms from Neighborhoods
BP	GO:0009733	response to auxin	IEP	Predict GO terms from Neighborhoods
BP	GO:0009755	hormone-mediated signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0009787	regulation of abscisic acid-activated signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0009789	positive regulation of abscisic acid-activated signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0009835	fruit ripening	IEP	Predict GO terms from Neighborhoods
BP	GO:0009861	jasmonic acid and ethylene-dependent systemic resistance	IEP	Predict GO terms from Neighborhoods
BP	GO:0009864	induced systemic resistance, jasmonic acid mediated signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0009867	jasmonic acid mediated signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0009888	tissue development	IEP	Predict GO terms from Neighborhoods
BP	GO:0009890	negative regulation of biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009891	positive regulation of biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009893	positive regulation of metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0009916	alternative oxidase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0009925	basal plasma membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0009967	positive regulation of signal transduction	IEP	Predict GO terms from Neighborhoods
BP	GO:0010014	meristem initiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0010035	response to inorganic substance	IEP	Predict GO terms from Neighborhoods
BP	GO:0010047	fruit dehiscence	IEP	Predict GO terms from Neighborhoods
BP	GO:0010072	primary shoot apical meristem specification	IEP	Predict GO terms from Neighborhoods
BP	GO:0010087	phloem or xylem histogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0010104	regulation of ethylene-activated signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0010118	stomatal movement	IEP	Predict GO terms from Neighborhoods
BP	GO:0010185	regulation of cellular defense response	IEP	Predict GO terms from Neighborhoods
BP	GO:0010186	positive regulation of cellular defense response	IEP	Predict GO terms from Neighborhoods
BP	GO:0010199	organ boundary specification between lateral organs and the meristem	IEP	Predict GO terms from Neighborhoods
BP	GO:0010200	response to chitin	IEP	Predict GO terms from Neighborhoods
BP	GO:0010223	secondary shoot formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0010230	alternative respiration	IEP	Predict GO terms from Neighborhoods
BP	GO:0010243	response to organonitrogen compound	IEP	Predict GO terms from Neighborhoods
BP	GO:0010271	regulation of chlorophyll catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010346	shoot axis formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010604	positive regulation of macromolecule metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0016143	S-glycoside metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0016679	oxidoreductase activity, acting on diphenols and related substances as donors	IEP	Predict GO terms from Neighborhoods
MF	GO:0016682	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor	IEP	Predict GO terms from Neighborhoods
BP	GO:0019216	regulation of lipid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019748	secondary metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019757	glycosinolate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019760	glucosinolate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0021700	developmental maturation	IEP	Predict GO terms from Neighborhoods
BP	GO:0031325	positive regulation of cellular metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0031328	positive regulation of cellular biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0031347	regulation of defense response	IEP	Predict GO terms from Neighborhoods
BP	GO:0031349	positive regulation of defense response	IEP	Predict GO terms from Neighborhoods
BP	GO:0031930	mitochondria-nucleus signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0032101	regulation of response to external stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0032103	positive regulation of response to external stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0032990	cell part morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0034330	cell junction organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0035637	multicellular organismal signaling	IEP	Predict GO terms from Neighborhoods
CC	GO:0042383	sarcolemma	IEP	Predict GO terms from Neighborhoods
BP	GO:0042391	regulation of membrane potential	IEP	Predict GO terms from Neighborhoods
BP	GO:0043266	regulation of potassium ion transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0043436	oxoacid metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0043565	sequence-specific DNA binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0044304	main axon	IEP	Predict GO terms from Neighborhoods
BP	GO:0045088	regulation of innate immune response	IEP	Predict GO terms from Neighborhoods
BP	GO:0045089	positive regulation of innate immune response	IEP	Predict GO terms from Neighborhoods
BP	GO:0045333	cellular respiration	IEP	Predict GO terms from Neighborhoods
BP	GO:0045491	xylan metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0045833	negative regulation of lipid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0045893	positive regulation of DNA-templated transcription	IEP	Predict GO terms from Neighborhoods
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046890	regulation of lipid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0048518	positive regulation of biological process	IEP	Predict GO terms from Neighborhoods
BP	GO:0048519	negative regulation of biological process	IEP	Predict GO terms from Neighborhoods
BP	GO:0048522	positive regulation of cellular process	IEP	Predict GO terms from Neighborhoods
BP	GO:0048584	positive regulation of response to stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0048759	xylem vessel member cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0048812	neuron projection morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0048858	cell projection morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0048859	formation of anatomical boundary	IEP	Predict GO terms from Neighborhoods
BP	GO:0050776	regulation of immune response	IEP	Predict GO terms from Neighborhoods
BP	GO:0050778	positive regulation of immune response	IEP	Predict GO terms from Neighborhoods
BP	GO:0050808	synapse organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0050832	defense response to fungus	IEP	Predict GO terms from Neighborhoods
BP	GO:0051055	negative regulation of lipid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051254	positive regulation of RNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051301	cell division	IEP	Predict GO terms from Neighborhoods
BP	GO:0051782	negative regulation of cell division	IEP	Predict GO terms from Neighborhoods
BP	GO:0070297	regulation of phosphorelay signal transduction system	IEP	Predict GO terms from Neighborhoods
CC	GO:0070469	respirasome	IEP	Predict GO terms from Neighborhoods
BP	GO:0071695	anatomical structure maturation	IEP	Predict GO terms from Neighborhoods
BP	GO:0080134	regulation of response to stress	IEP	Predict GO terms from Neighborhoods
BP	GO:0080187	floral organ senescence	IEP	Predict GO terms from Neighborhoods
BP	GO:0090056	regulation of chlorophyll metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0090059	protoxylem development	IEP	Predict GO terms from Neighborhoods
BP	GO:0090332	stomatal closure	IEP	Predict GO terms from Neighborhoods
BP	GO:0090398	cellular senescence	IEP	Predict GO terms from Neighborhoods
BP	GO:0090400	stress-induced premature senescence	IEP	Predict GO terms from Neighborhoods
BP	GO:0090421	embryonic meristem initiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0090691	formation of plant organ boundary	IEP	Predict GO terms from Neighborhoods
BP	GO:0090709	regulation of timing of plant organ formation	IEP	Predict GO terms from Neighborhoods
MF	GO:0102721	ubiquinol:oxygen oxidoreductase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0120039	plasma membrane bounded cell projection morphogenesis	IEP	Predict GO terms from Neighborhoods
MF	GO:0140110	transcription regulator activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1901135	carbohydrate derivative metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901401	regulation of tetrapyrrole metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901403	positive regulation of tetrapyrrole metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901404	regulation of tetrapyrrole catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901406	positive regulation of tetrapyrrole catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901419	regulation of response to alcohol	IEP	Predict GO terms from Neighborhoods
BP	GO:1901657	glycosyl compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901698	response to nitrogen compound	IEP	Predict GO terms from Neighborhoods
BP	GO:1902531	regulation of intracellular signal transduction	IEP	Predict GO terms from Neighborhoods
BP	GO:1902680	positive regulation of RNA biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	IEP	Predict GO terms from Neighborhoods
BP	GO:1903522	regulation of blood circulation	IEP	Predict GO terms from Neighborhoods
BP	GO:1903648	positive regulation of chlorophyll catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1904248	regulation of age-related resistance	IEP	Predict GO terms from Neighborhoods
BP	GO:1904250	positive regulation of age-related resistance	IEP	Predict GO terms from Neighborhoods
BP	GO:1904276	regulation of wax biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1904277	negative regulation of wax biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1905177	tracheary element differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:1905428	regulation of plant organ formation	IEP	Predict GO terms from Neighborhoods
BP	GO:1905957	regulation of cellular response to alcohol	IEP	Predict GO terms from Neighborhoods
MF	GO:1990837	sequence-specific double-stranded DNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:2000014	regulation of endosperm development	IEP	Predict GO terms from Neighborhoods
BP	GO:2001257	regulation of cation channel activity	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR008889	VQ	26	52

External Links

No external refs found!

SOLTUB.AGRIA.G00000003728

Expression Profile

Co-expression Networks

Functional Annotation