SOLTUB.AGRIA.G00000037172

Description : Pentatricopeptide repeat-containing protein

Gene families : OG_02_0011188 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000037172
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_150

Type	GO Term	Name	Evidence	Source
BP	GO:0000959	mitochondrial RNA metabolic process	None	Extended
BP	GO:0003002	regionalization	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003729	mRNA binding	IEA	AHRD
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005739	mitochondrion	IEA	AHRD
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	IEA	AHRD
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0007389	pattern specification process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	None	Extended
CC	GO:0009536	plastid	IEA	AHRD
BP	GO:0009756	carbohydrate mediated signaling	None	Extended
BP	GO:0009888	tissue development	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010051	xylem and phloem pattern formation	None	Extended
BP	GO:0010087	phloem or xylem histogenesis	IEA	AHRD
BP	GO:0010182	sugar mediated signaling pathway	IEA	AHRD
BP	GO:0010305	leaf vascular tissue pattern formation	IEA	AHRD
BP	GO:0010588	cotyledon vascular tissue pattern formation	IEA	AHRD
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0016556	mRNA modification	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080156	mitochondrial mRNA modification	IEA	AHRD
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1900864	mitochondrial RNA modification	None	Extended
BP	GO:1900865	chloroplast RNA modification	IEA	AHRD
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000372	Group I intron splicing	IEP	Predict GO terms from Neighborhoods
BP	GO:0000373	Group II intron splicing	IEP	Predict GO terms from Neighborhoods
BP	GO:0000376	RNA splicing, via transesterification reactions with guanosine as nucleophile	IEP	Predict GO terms from Neighborhoods
BP	GO:0000963	mitochondrial RNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0001910	regulation of leukocyte mediated cytotoxicity	IEP	Predict GO terms from Neighborhoods
BP	GO:0002474	antigen processing and presentation of peptide antigen via MHC class I	IEP	Predict GO terms from Neighborhoods
BP	GO:0002483	antigen processing and presentation of endogenous peptide antigen	IEP	Predict GO terms from Neighborhoods
BP	GO:0002703	regulation of leukocyte mediated immunity	IEP	Predict GO terms from Neighborhoods
BP	GO:0002706	regulation of lymphocyte mediated immunity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005765	lysosomal membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0006397	mRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0006775	fat-soluble vitamin metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006986	response to unfolded protein	IEP	Predict GO terms from Neighborhoods
BP	GO:0009657	plastid organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0010044	response to aluminum ion	IEP	Predict GO terms from Neighborhoods
BP	GO:0010217	cellular aluminum ion homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0010467	gene expression	IEP	Predict GO terms from Neighborhoods
MF	GO:0015083	aluminum ion transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015440	ABC-type peptide transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0019750	chloroplast localization	IEP	Predict GO terms from Neighborhoods
BP	GO:0019882	antigen processing and presentation	IEP	Predict GO terms from Neighborhoods
BP	GO:0019883	antigen processing and presentation of endogenous antigen	IEP	Predict GO terms from Neighborhoods
BP	GO:0019885	antigen processing and presentation of endogenous peptide antigen via MHC class I	IEP	Predict GO terms from Neighborhoods
BP	GO:0031154	culmination involved in sorocarp development	IEP	Predict GO terms from Neighborhoods
BP	GO:0031288	sorocarp morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0031341	regulation of cell killing	IEP	Predict GO terms from Neighborhoods
BP	GO:0031426	polycistronic mRNA processing	IEP	Predict GO terms from Neighborhoods
CC	GO:0031969	chloroplast membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0032544	plastid translation	IEP	Predict GO terms from Neighborhoods
CC	GO:0032592	integral component of mitochondrial membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0034514	mitochondrial unfolded protein response	IEP	Predict GO terms from Neighborhoods
BP	GO:0034620	cellular response to unfolded protein	IEP	Predict GO terms from Neighborhoods
CC	GO:0034702	ion channel complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0034703	cation channel complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0034705	potassium channel complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0035967	cellular response to topologically incorrect protein	IEP	Predict GO terms from Neighborhoods
BP	GO:0042181	ketone biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042254	ribosome biogenesis	IEP	Predict GO terms from Neighborhoods
MF	GO:0042287	MHC protein binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0042362	fat-soluble vitamin biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042371	vitamin K biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042372	phylloquinone biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042373	vitamin K metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042374	phylloquinone metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042548	regulation of photosynthesis, light reaction	IEP	Predict GO terms from Neighborhoods
BP	GO:0042550	photosystem I stabilization	IEP	Predict GO terms from Neighborhoods
CC	GO:0042824	MHC class I peptide loading complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0043489	RNA stabilization	IEP	Predict GO terms from Neighborhoods
BP	GO:0045637	regulation of myeloid cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0045639	positive regulation of myeloid cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0045646	regulation of erythrocyte differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0045648	positive regulation of erythrocyte differentiation	IEP	Predict GO terms from Neighborhoods
MF	GO:0046977	TAP binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0046984	regulation of hemoglobin biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046985	positive regulation of hemoglobin biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0048002	antigen processing and presentation of peptide antigen	IEP	Predict GO terms from Neighborhoods
BP	GO:0048821	erythrocyte development	IEP	Predict GO terms from Neighborhoods
BP	GO:0051644	plastid localization	IEP	Predict GO terms from Neighborhoods
BP	GO:0055079	aluminum ion homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0061515	myeloid cell development	IEP	Predict GO terms from Neighborhoods
CC	GO:0062157	mitochondrial ATP-gated potassium channel complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0090615	mitochondrial mRNA processing	IEP	Predict GO terms from Neighborhoods
CC	GO:0098573	intrinsic component of mitochondrial membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0140040	mitochondrial polycistronic RNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0140053	mitochondrial gene expression	IEP	Predict GO terms from Neighborhoods
BP	GO:1901661	quinone metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901663	quinone biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1902369	negative regulation of RNA catabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:1902495	transmembrane transporter complex	IEP	Predict GO terms from Neighborhoods
BP	GO:1902602	aluminum ion transmembrane transport	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	395	440
IPR002885	Pentatricopeptide_repeat	496	542
IPR002885	Pentatricopeptide_repeat	188	231
IPR002885	Pentatricopeptide_repeat	597	644
IPR002885	Pentatricopeptide_repeat	295	320
IPR002885	Pentatricopeptide_repeat	82	109
IPR002885	Pentatricopeptide_repeat	635	669
IPR002885	Pentatricopeptide_repeat	367	397
IPR002885	Pentatricopeptide_repeat	397	430
IPR002885	Pentatricopeptide_repeat	191	225
IPR002885	Pentatricopeptide_repeat	600	634
IPR002885	Pentatricopeptide_repeat	500	533

External Links

No external refs found!

SOLTUB.AGRIA.G00000037172

Expression Profile

Co-expression Networks

Functional Annotation