SOLTUB.AGRIA.G00000037189

Description : 5'-3' exonuclease

Gene families : OG_02_0005070 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000037189
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_34

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004518	nuclease activity	IEA	AHRD
MF	GO:0005488	binding	IEA	AHRD
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	IEA	AHRD
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	IEA	AHRD
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001822	kidney development	IEP	Predict GO terms from Neighborhoods
BP	GO:0001947	heart looping	IEP	Predict GO terms from Neighborhoods
BP	GO:0002009	morphogenesis of an epithelium	IEP	Predict GO terms from Neighborhoods
BP	GO:0003008	system process	IEP	Predict GO terms from Neighborhoods
BP	GO:0003143	embryonic heart tube morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0003146	heart jogging	IEP	Predict GO terms from Neighborhoods
BP	GO:0003279	cardiac septum development	IEP	Predict GO terms from Neighborhoods
BP	GO:0003283	atrial septum development	IEP	Predict GO terms from Neighborhoods
BP	GO:0003341	cilium movement	IEP	Predict GO terms from Neighborhoods
BP	GO:0003351	epithelial cilium movement involved in extracellular fluid movement	IEP	Predict GO terms from Neighborhoods
MF	GO:0003735	structural constituent of ribosome	IEP	Predict GO terms from Neighborhoods
MF	GO:0005198	structural molecule activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005856	cytoskeleton	IEP	Predict GO terms from Neighborhoods
CC	GO:0005871	kinesin complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0005874	microtubule	IEP	Predict GO terms from Neighborhoods
CC	GO:0005875	microtubule associated complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0005929	cilium	IEP	Predict GO terms from Neighborhoods
BP	GO:0006397	mRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0006858	extracellular transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0007017	microtubule-based process	IEP	Predict GO terms from Neighborhoods
BP	GO:0007018	microtubule-based movement	IEP	Predict GO terms from Neighborhoods
BP	GO:0007163	establishment or maintenance of cell polarity	IEP	Predict GO terms from Neighborhoods
BP	GO:0007166	cell surface receptor signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0007368	determination of left/right symmetry	IEP	Predict GO terms from Neighborhoods
BP	GO:0007600	sensory perception	IEP	Predict GO terms from Neighborhoods
BP	GO:0007601	visual perception	IEP	Predict GO terms from Neighborhoods
BP	GO:0008380	RNA splicing	IEP	Predict GO terms from Neighborhoods
BP	GO:0009799	specification of symmetry	IEP	Predict GO terms from Neighborhoods
BP	GO:0009855	determination of bilateral symmetry	IEP	Predict GO terms from Neighborhoods
BP	GO:0009887	animal organ morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0010239	chloroplast mRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0016055	Wnt signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0030030	cell projection organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0030031	cell projection assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0030111	regulation of Wnt signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0030178	negative regulation of Wnt signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0030198	extracellular matrix organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0030324	lung development	IEP	Predict GO terms from Neighborhoods
BP	GO:0031425	chloroplast RNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0032092	positive regulation of protein binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0032501	multicellular organismal process	IEP	Predict GO terms from Neighborhoods
BP	GO:0035239	tube morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0035295	tube development	IEP	Predict GO terms from Neighborhoods
BP	GO:0035469	determination of pancreatic left/right asymmetry	IEP	Predict GO terms from Neighborhoods
BP	GO:0043062	extracellular structure organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0043393	regulation of protein binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0044093	positive regulation of molecular function	IEP	Predict GO terms from Neighborhoods
BP	GO:0044782	cilium organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0045494	photoreceptor cell maintenance	IEP	Predict GO terms from Neighborhoods
BP	GO:0045596	negative regulation of cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0045995	regulation of embryonic development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048496	maintenance of animal organ identity	IEP	Predict GO terms from Neighborhoods
BP	GO:0048598	embryonic morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0048729	tissue morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0048793	pronephros development	IEP	Predict GO terms from Neighborhoods
BP	GO:0050877	nervous system process	IEP	Predict GO terms from Neighborhoods
BP	GO:0050953	sensory perception of light stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0051098	regulation of binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0051099	positive regulation of binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0051960	regulation of nervous system development	IEP	Predict GO terms from Neighborhoods
BP	GO:0060026	convergent extension	IEP	Predict GO terms from Neighborhoods
BP	GO:0060027	convergent extension involved in gastrulation	IEP	Predict GO terms from Neighborhoods
BP	GO:0060271	cilium assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0060287	epithelial cilium movement involved in determination of left/right asymmetry	IEP	Predict GO terms from Neighborhoods
BP	GO:0060562	epithelial tube morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0060828	regulation of canonical Wnt signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0060972	left/right pattern formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0060993	kidney morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0070121	Kupffer's vesicle development	IEP	Predict GO terms from Neighborhoods
BP	GO:0070925	organelle assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0071907	determination of digestive tract left/right asymmetry	IEP	Predict GO terms from Neighborhoods
BP	GO:0071908	determination of intestine left/right asymmetry	IEP	Predict GO terms from Neighborhoods
BP	GO:0071909	determination of stomach left/right asymmetry	IEP	Predict GO terms from Neighborhoods
BP	GO:0071910	determination of liver left/right asymmetry	IEP	Predict GO terms from Neighborhoods
BP	GO:0072189	ureter development	IEP	Predict GO terms from Neighborhoods
BP	GO:0090090	negative regulation of canonical Wnt signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0090175	regulation of establishment of planar polarity	IEP	Predict GO terms from Neighborhoods
BP	GO:0090178	regulation of establishment of planar polarity involved in neural tube closure	IEP	Predict GO terms from Neighborhoods
CC	GO:0097543	ciliary inversin compartment	IEP	Predict GO terms from Neighborhoods
CC	GO:0097546	ciliary base	IEP	Predict GO terms from Neighborhoods
CC	GO:0099081	supramolecular polymer	IEP	Predict GO terms from Neighborhoods
BP	GO:0099111	microtubule-based transport	IEP	Predict GO terms from Neighborhoods
CC	GO:0099512	supramolecular fiber	IEP	Predict GO terms from Neighborhoods
CC	GO:0099513	polymeric cytoskeletal fiber	IEP	Predict GO terms from Neighborhoods
BP	GO:0120031	plasma membrane bounded cell projection assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0120036	plasma membrane bounded cell projection organization	IEP	Predict GO terms from Neighborhoods
BP	GO:1905114	cell surface receptor signaling pathway involved in cell-cell signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:1905515	non-motile cilium assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:2000027	regulation of animal organ morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:2000050	regulation of non-canonical Wnt signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:2000095	regulation of Wnt signaling pathway, planar cell polarity pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:2000167	regulation of planar cell polarity pathway involved in neural tube closure	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR020046	5-3_exonucl_a-hlix_arch_N	103	229
IPR020045	DNA_polI_H3TH	258	343
IPR029060	PIN-like_dom_sf	83	249
IPR036279	5-3_exonuclease_C_sf	258	351

External Links

No external refs found!

SOLTUB.AGRIA.G00000037189

Expression Profile

Co-expression Networks

Functional Annotation