SOLTUB.AGRIA.G00000037395

Description : MADS-box transcription factor family protein

Gene families : OG_02_0000984 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000037395
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_7

Type	GO Term	Name	Evidence	Source
BP	GO:0000002	mitochondrial genome maintenance	IEA	AHRD
BP	GO:0000122	negative regulation of transcription by RNA polymerase II	IEA	AHRD
BP	GO:0000165	MAPK cascade	None	Extended
CC	GO:0000785	chromatin	IEA	AHRD
MF	GO:0000976	transcription cis-regulatory region binding	None	Extended
MF	GO:0000977	RNA polymerase II transcription regulatory region sequence-specific DNA binding	None	Extended
MF	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding	IEA	AHRD
MF	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific	None	Extended
MF	GO:0000987	cis-regulatory region sequence-specific DNA binding	None	Extended
MF	GO:0001067	transcription regulatory region nucleic acid binding	None	Extended
MF	GO:0001216	DNA-binding transcription activator activity	None	Extended
MF	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific	IEA	AHRD
BP	GO:0001501	skeletal system development	IEA	AHRD
BP	GO:0001503	ossification	IEA	AHRD
BP	GO:0003002	regionalization	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003682	chromatin binding	IEA	AHRD
MF	GO:0003690	double-stranded DNA binding	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005654	nucleoplasm	IEA	AHRD
CC	GO:0005667	transcription regulator complex	IEA	AHRD
CC	GO:0005829	cytosol	IEA	AHRD
BP	GO:0006355	regulation of DNA-templated transcription	None	Extended
BP	GO:0006357	regulation of transcription by RNA polymerase II	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007005	mitochondrion organization	None	Extended
BP	GO:0007010	cytoskeleton organization	None	Extended
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0007275	multicellular organism development	None	Extended
BP	GO:0007389	pattern specification process	None	Extended
BP	GO:0007517	muscle organ development	IEA	AHRD
BP	GO:0008016	regulation of heart contraction	None	Extended
MF	GO:0008134	transcription factor binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008301	DNA binding, bending	IEA	AHRD
BP	GO:0009555	pollen development	IEA	AHRD
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009890	negative regulation of biosynthetic process	None	Extended
BP	GO:0009891	positive regulation of biosynthetic process	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0009952	anterior/posterior pattern specification	IEA	AHRD
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010035	response to inorganic substance	None	Extended
BP	GO:0010038	response to metal ion	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010558	negative regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010564	regulation of cell cycle process	None	Extended
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010611	regulation of cardiac muscle hypertrophy	None	Extended
BP	GO:0010613	positive regulation of cardiac muscle hypertrophy	IEA	AHRD
BP	GO:0010628	positive regulation of gene expression	IEA	AHRD
BP	GO:0010827	regulation of glucose transmembrane transport	None	Extended
BP	GO:0010828	positive regulation of glucose transmembrane transport	None	Extended
BP	GO:0010927	cellular component assembly involved in morphogenesis	None	Extended
BP	GO:0014742	positive regulation of muscle hypertrophy	None	Extended
BP	GO:0014743	regulation of muscle hypertrophy	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
MF	GO:0019899	enzyme binding	None	Extended
MF	GO:0019900	kinase binding	None	Extended
MF	GO:0019901	protein kinase binding	None	Extended
BP	GO:0022407	regulation of cell-cell adhesion	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
BP	GO:0023052	signaling	None	Extended
BP	GO:0030029	actin filament-based process	None	Extended
BP	GO:0030036	actin cytoskeleton organization	None	Extended
BP	GO:0030155	regulation of cell adhesion	None	Extended
BP	GO:0030239	myofibril assembly	None	Extended
BP	GO:0031032	actomyosin structure organization	None	Extended
BP	GO:0031156	regulation of sorocarp development	None	Extended
BP	GO:0031285	regulation of sorocarp stalk cell differentiation	IEA	AHRD
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031324	negative regulation of cellular metabolic process	None	Extended
BP	GO:0031325	positive regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031327	negative regulation of cellular biosynthetic process	None	Extended
BP	GO:0031328	positive regulation of cellular biosynthetic process	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0032879	regulation of localization	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034762	regulation of transmembrane transport	None	Extended
BP	GO:0034764	positive regulation of transmembrane transport	None	Extended
MF	GO:0035035	histone acetyltransferase binding	IEA	AHRD
BP	GO:0035556	intracellular signal transduction	None	Extended
BP	GO:0035637	multicellular organismal signaling	None	Extended
BP	GO:0036003	positive regulation of transcription from RNA polymerase II promoter in response to stress	IEA	AHRD
BP	GO:0042221	response to chemical	None	Extended
MF	GO:0042826	histone deacetylase binding	IEA	AHRD
BP	GO:0043502	regulation of muscle adaptation	None	Extended
MF	GO:0043565	sequence-specific DNA binding	None	Extended
BP	GO:0043618	regulation of transcription from RNA polymerase II promoter in response to stress	None	Extended
BP	GO:0043620	regulation of DNA-templated transcription in response to stress	None	Extended
BP	GO:0044057	regulation of system process	None	Extended
BP	GO:0045595	regulation of cell differentiation	None	Extended
BP	GO:0045892	negative regulation of DNA-templated transcription	None	Extended
BP	GO:0045893	positive regulation of DNA-templated transcription	None	Extended
BP	GO:0045934	negative regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0045944	positive regulation of transcription by RNA polymerase II	None	Extended
BP	GO:0046324	regulation of glucose import	None	Extended
BP	GO:0046326	positive regulation of glucose import	IEA	AHRD
MF	GO:0046332	SMAD binding	IEA	AHRD
MF	GO:0046982	protein heterodimerization activity	IEA	AHRD
MF	GO:0046983	protein dimerization activity	None	Extended
BP	GO:0048229	gametophyte development	None	Extended
BP	GO:0048311	mitochondrion distribution	IEA	AHRD
BP	GO:0048513	animal organ development	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0048578	positive regulation of long-day photoperiodism, flowering	IEA	AHRD
BP	GO:0048580	regulation of post-embryonic development	None	Extended
BP	GO:0048582	positive regulation of post-embryonic development	None	Extended
BP	GO:0048583	regulation of response to stimulus	None	Extended
BP	GO:0048584	positive regulation of response to stimulus	None	Extended
BP	GO:0048586	regulation of long-day photoperiodism, flowering	None	Extended
BP	GO:0048646	anatomical structure formation involved in morphogenesis	None	Extended
BP	GO:0048731	system development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
MF	GO:0051019	mitogen-activated protein kinase binding	IEA	AHRD
BP	GO:0051049	regulation of transport	None	Extended
BP	GO:0051050	positive regulation of transport	None	Extended
BP	GO:0051094	positive regulation of developmental process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051172	negative regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051239	regulation of multicellular organismal process	None	Extended
BP	GO:0051240	positive regulation of multicellular organismal process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051253	negative regulation of RNA metabolic process	None	Extended
BP	GO:0051254	positive regulation of RNA metabolic process	None	Extended
BP	GO:0051592	response to calcium ion	None	Extended
BP	GO:0051640	organelle localization	None	Extended
BP	GO:0051646	mitochondrion localization	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0051726	regulation of cell cycle	None	Extended
BP	GO:0055003	cardiac myofibril assembly	None	Extended
BP	GO:0055005	ventricular cardiac myofibril assembly	IEA	AHRD
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0060256	regulation of flocculation	IEA	AHRD
BP	GO:0061061	muscle structure development	None	Extended
BP	GO:0061337	cardiac conduction	IEA	AHRD
MF	GO:0061629	RNA polymerase II-specific DNA-binding transcription factor binding	IEA	AHRD
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070375	ERK5 cascade	IEA	AHRD
BP	GO:0070887	cellular response to chemical stimulus	None	Extended
BP	GO:0070925	organelle assembly	None	Extended
BP	GO:0071241	cellular response to inorganic substance	None	Extended
BP	GO:0071248	cellular response to metal ion	None	Extended
BP	GO:0071277	cellular response to calcium ion	IEA	AHRD
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090257	regulation of muscle system process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097435	supramolecular fiber organization	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:0140297	DNA-binding transcription factor binding	None	Extended
BP	GO:0140694	non-membrane-bounded organelle assembly	None	Extended
BP	GO:1901261	regulation of sorocarp spore cell differentiation	IEA	AHRD
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1902679	negative regulation of RNA biosynthetic process	None	Extended
BP	GO:1902680	positive regulation of RNA biosynthetic process	None	Extended
BP	GO:1903450	regulation of G1 to G0 transition	IEA	AHRD
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1903507	negative regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1903522	regulation of blood circulation	None	Extended
MF	GO:1990837	sequence-specific double-stranded DNA binding	None	Extended
BP	GO:2000026	regulation of multicellular organismal development	None	Extended
BP	GO:2000028	regulation of photoperiodism, flowering	None	Extended
BP	GO:2000241	regulation of reproductive process	None	Extended
BP	GO:2000243	positive regulation of reproductive process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000064	L-ornithine transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0001666	response to hypoxia	IEP	Predict GO terms from Neighborhoods
BP	GO:0003333	amino acid transmembrane transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0004557	alpha-galactosidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004843	cysteine-type deubiquitinase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005242	inward rectifier potassium channel activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005290	L-histidine transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0006508	proteolysis	IEP	Predict GO terms from Neighborhoods
BP	GO:0006561	proline biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006844	acyl carnitine transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0006865	amino acid transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0006986	response to unfolded protein	IEP	Predict GO terms from Neighborhoods
BP	GO:0007548	sex differentiation	IEP	Predict GO terms from Neighborhoods
MF	GO:0008194	UDP-glycosyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008234	cysteine-type peptidase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009313	oligosaccharide catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009835	fruit ripening	IEP	Predict GO terms from Neighborhoods
BP	GO:0009871	jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0010234	anther wall tapetum cell fate specification	IEP	Predict GO terms from Neighborhoods
MF	GO:0010294	abscisic acid glucosyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0010390	histone monoubiquitination	IEP	Predict GO terms from Neighborhoods
BP	GO:0010398	xylogalacturonan metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010498	proteasomal protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010676	positive regulation of cellular carbohydrate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010907	positive regulation of glucose metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0015171	amino acid transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015173	aromatic amino acid transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015174	basic amino acid transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015189	L-lysine transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015271	outward rectifier potassium channel activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0015697	quaternary ammonium group transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015801	aromatic amino acid transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015822	ornithine transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0016055	Wnt signaling pathway	IEP	Predict GO terms from Neighborhoods
MF	GO:0016757	glycosyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016758	hexosyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0019783	ubiquitin-like protein peptidase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0030002	cellular anion homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0030163	protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0030238	male sex determination	IEP	Predict GO terms from Neighborhoods
BP	GO:0030643	cellular phosphate ion homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0030656	regulation of vitamin metabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0031464	Cul4A-RING E3 ubiquitin ligase complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0031465	Cul4B-RING E3 ubiquitin ligase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0032268	regulation of cellular protein metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0033522	histone H2A ubiquitination	IEP	Predict GO terms from Neighborhoods
BP	GO:0033530	raffinose metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0034484	raffinose catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0034620	cellular response to unfolded protein	IEP	Predict GO terms from Neighborhoods
BP	GO:0035518	histone H2A monoubiquitination	IEP	Predict GO terms from Neighborhoods
BP	GO:0035966	response to topologically incorrect protein	IEP	Predict GO terms from Neighborhoods
BP	GO:0035967	cellular response to topologically incorrect protein	IEP	Predict GO terms from Neighborhoods
BP	GO:0036293	response to decreased oxygen levels	IEP	Predict GO terms from Neighborhoods
BP	GO:0042078	germ-line stem cell division	IEP	Predict GO terms from Neighborhoods
CC	GO:0043073	germ cell nucleus	IEP	Predict GO terms from Neighborhoods
BP	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0045117	azole transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0045722	positive regulation of gluconeogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0045913	positive regulation of carbohydrate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046475	glycerophospholipid catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046661	male sex differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0046719	regulation by virus of viral protein levels in host cell	IEP	Predict GO terms from Neighborhoods
BP	GO:0046726	positive regulation by virus of viral protein levels in host cell	IEP	Predict GO terms from Neighborhoods
MF	GO:0047215	indole-3-acetate beta-glucosyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0047268	galactinol-raffinose galactosyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0047274	galactinol-sucrose galactosyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0051788	response to misfolded protein	IEP	Predict GO terms from Neighborhoods
MF	GO:0052639	salicylic acid glucosyltransferase (ester-forming) activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0052641	benzoic acid glucosyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0052692	raffinose alpha-galactosidase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0060348	bone development	IEP	Predict GO terms from Neighborhoods
BP	GO:0070914	UV-damage excision repair	IEP	Predict GO terms from Neighborhoods
CC	GO:0071006	U2-type catalytic step 1 spliceosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0071012	catalytic step 1 spliceosome	IEP	Predict GO terms from Neighborhoods
BP	GO:0071218	cellular response to misfolded protein	IEP	Predict GO terms from Neighborhoods
BP	GO:0072502	cellular trivalent inorganic anion homeostasis	IEP	Predict GO terms from Neighborhoods
MF	GO:0080002	UDP-glucose:4-aminobenzoate acylglucosyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0080148	negative regulation of response to water deprivation	IEP	Predict GO terms from Neighborhoods
BP	GO:0089709	L-histidine transmembrane transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0090704	nicotinate-O-glucosyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0098655	cation transmembrane transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0101005	deubiquitinase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:1901474	azole transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1902022	L-lysine transport	IEP	Predict GO terms from Neighborhoods
BP	GO:1902188	obsolete positive regulation of viral release from host cell	IEP	Predict GO terms from Neighborhoods
BP	GO:1903034	regulation of response to wounding	IEP	Predict GO terms from Neighborhoods
BP	GO:1903352	L-ornithine transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:1903401	L-lysine transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:1903825	organic acid transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:1905039	carboxylic acid transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:1905114	cell surface receptor signaling pathway involved in cell-cell signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:2000082	regulation of L-ascorbic acid biosynthetic process	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR036879	TF_MADSbox_sf	2	87
IPR002100	TF_MADSbox	11	48

External Links

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SOLTUB.AGRIA.G00000037395

Expression Profile

Co-expression Networks

Functional Annotation