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  5. SOLTUB.AGRIA.G00000003752

SOLTUB.AGRIA.G00000003752


Description : Pre-rRNA-processing protein TSR2, putative


Gene families : OG_02_0007672 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000003752
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_256


Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP Predict GO terms from Neighborhoods
CC GO:0000178 exosome (RNase complex) IEP Predict GO terms from Neighborhoods
BP GO:0000291 nuclear-transcribed mRNA catabolic process, exonucleolytic IEP Predict GO terms from Neighborhoods
BP GO:0000455 enzyme-directed rRNA pseudouridine synthesis IEP Predict GO terms from Neighborhoods
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Predict GO terms from Neighborhoods
BP GO:0001522 pseudouridine synthesis IEP Predict GO terms from Neighborhoods
MF GO:0001530 lipopolysaccharide binding IEP Predict GO terms from Neighborhoods
BP GO:0001654 eye development IEP Predict GO terms from Neighborhoods
MF GO:0003724 RNA helicase activity IEP Predict GO terms from Neighborhoods
CC GO:0005669 transcription factor TFIID complex IEP Predict GO terms from Neighborhoods
CC GO:0005730 nucleolus IEP Predict GO terms from Neighborhoods
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006352 DNA-templated transcription initiation IEP Predict GO terms from Neighborhoods
BP GO:0006364 rRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0006367 transcription initiation at RNA polymerase II promoter IEP Predict GO terms from Neighborhoods
BP GO:0006396 RNA processing IEP Predict GO terms from Neighborhoods
BP GO:0006397 mRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0007416 synapse assembly IEP Predict GO terms from Neighborhoods
BP GO:0007423 sensory organ development IEP Predict GO terms from Neighborhoods
BP GO:0007528 neuromuscular junction development IEP Predict GO terms from Neighborhoods
BP GO:0007626 locomotory behavior IEP Predict GO terms from Neighborhoods
MF GO:0008186 ATP-dependent activity, acting on RNA IEP Predict GO terms from Neighborhoods
BP GO:0008344 adult locomotory behavior IEP Predict GO terms from Neighborhoods
BP GO:0008345 larval locomotory behavior IEP Predict GO terms from Neighborhoods
BP GO:0008380 RNA splicing IEP Predict GO terms from Neighborhoods
BP GO:0008582 regulation of synaptic assembly at neuromuscular junction IEP Predict GO terms from Neighborhoods
BP GO:0008625 extrinsic apoptotic signaling pathway via death domain receptors IEP Predict GO terms from Neighborhoods
CC GO:0015030 Cajal body IEP Predict GO terms from Neighborhoods
BP GO:0016070 RNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0016071 mRNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0016072 rRNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0016075 rRNA catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0030490 maturation of SSU-rRNA IEP Predict GO terms from Neighborhoods
BP GO:0030534 adult behavior IEP Predict GO terms from Neighborhoods
BP GO:0030537 larval behavior IEP Predict GO terms from Neighborhoods
BP GO:0031118 rRNA pseudouridine synthesis IEP Predict GO terms from Neighborhoods
BP GO:0031123 RNA 3'-end processing IEP Predict GO terms from Neighborhoods
CC GO:0031312 extrinsic component of organelle membrane IEP Predict GO terms from Neighborhoods
MF GO:0032977 membrane insertase activity IEP Predict GO terms from Neighborhoods
BP GO:0034329 cell junction assembly IEP Predict GO terms from Neighborhoods
BP GO:0034427 nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' IEP Predict GO terms from Neighborhoods
BP GO:0034470 ncRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0034660 ncRNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0034661 ncRNA catabolic process IEP Predict GO terms from Neighborhoods
CC GO:0042406 extrinsic component of endoplasmic reticulum membrane IEP Predict GO terms from Neighborhoods
CC GO:0043228 non-membrane-bounded organelle IEP Predict GO terms from Neighborhoods
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predict GO terms from Neighborhoods
BP GO:0043489 RNA stabilization IEP Predict GO terms from Neighborhoods
BP GO:0043628 small regulatory ncRNA 3'-end processing IEP Predict GO terms from Neighborhoods
BP GO:0043633 polyadenylation-dependent RNA catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0043634 polyadenylation-dependent ncRNA catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0044087 regulation of cellular component biogenesis IEP Predict GO terms from Neighborhoods
BP GO:0045048 protein insertion into ER membrane IEP Predict GO terms from Neighborhoods
BP GO:0045050 protein insertion into ER membrane by stop-transfer membrane-anchor sequence IEP Predict GO terms from Neighborhoods
CC GO:0045111 intermediate filament cytoskeleton IEP Predict GO terms from Neighborhoods
BP GO:0045887 positive regulation of synaptic assembly at neuromuscular junction IEP Predict GO terms from Neighborhoods
BP GO:0048255 mRNA stabilization IEP Predict GO terms from Neighborhoods
BP GO:0048749 compound eye development IEP Predict GO terms from Neighborhoods
BP GO:0050807 regulation of synapse organization IEP Predict GO terms from Neighborhoods
BP GO:0050808 synapse organization IEP Predict GO terms from Neighborhoods
BP GO:0051124 synaptic assembly at neuromuscular junction IEP Predict GO terms from Neighborhoods
BP GO:0051205 protein insertion into membrane IEP Predict GO terms from Neighborhoods
BP GO:0051962 positive regulation of nervous system development IEP Predict GO terms from Neighborhoods
BP GO:0051963 regulation of synapse assembly IEP Predict GO terms from Neighborhoods
BP GO:0051965 positive regulation of synapse assembly IEP Predict GO terms from Neighborhoods
CC GO:0071013 catalytic step 2 spliceosome IEP Predict GO terms from Neighborhoods
BP GO:0071025 RNA surveillance IEP Predict GO terms from Neighborhoods
BP GO:0071027 nuclear RNA surveillance IEP Predict GO terms from Neighborhoods
BP GO:0071029 nuclear ncRNA surveillance IEP Predict GO terms from Neighborhoods
BP GO:0071046 nuclear polyadenylation-dependent ncRNA catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0071816 tail-anchored membrane protein insertion into ER membrane IEP Predict GO terms from Neighborhoods
CC GO:0072546 EMC complex IEP Predict GO terms from Neighborhoods
BP GO:0090069 regulation of ribosome biogenesis IEP Predict GO terms from Neighborhoods
BP GO:0090304 nucleic acid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0097190 apoptotic signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0097191 extrinsic apoptotic signaling pathway IEP Predict GO terms from Neighborhoods
MF GO:0140104 molecular carrier activity IEP Predict GO terms from Neighborhoods
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP Predict GO terms from Neighborhoods
MF GO:0140597 protein carrier chaperone IEP Predict GO terms from Neighborhoods
BP GO:1901888 regulation of cell junction assembly IEP Predict GO terms from Neighborhoods
BP GO:1901890 positive regulation of cell junction assembly IEP Predict GO terms from Neighborhoods
BP GO:1902369 negative regulation of RNA catabolic process IEP Predict GO terms from Neighborhoods
BP GO:1902373 negative regulation of mRNA catabolic process IEP Predict GO terms from Neighborhoods
BP GO:1903312 negative regulation of mRNA metabolic process IEP Predict GO terms from Neighborhoods
MF GO:1904047 S-adenosyl-L-methionine binding IEP Predict GO terms from Neighborhoods
BP GO:1904396 regulation of neuromuscular junction development IEP Predict GO terms from Neighborhoods
BP GO:1904398 positive regulation of neuromuscular junction development IEP Predict GO terms from Neighborhoods
CC GO:1905354 exoribonuclease complex IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR019398 Pre-rRNA_process_TSR2 22 100
No external refs found!