SOLTUB.AGRIA.G00000037468

Description : Pentatricopeptide repeat-containing protein

Gene families : OG_02_0005217 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000037468
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_127

Type	GO Term	Name	Evidence	Source
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003729	mRNA binding	IEA	AHRD
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005739	mitochondrion	IEA	AHRD
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010214	seed coat development	IEA	AHRD
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0016553	base conversion or substitution editing	None	Extended
BP	GO:0016554	cytidine to uridine editing	IEA	AHRD
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0031425	chloroplast RNA processing	IEA	AHRD
BP	GO:0031426	polycistronic mRNA processing	IEA	AHRD
BP	GO:0031930	mitochondria-nucleus signaling pathway	IEA	AHRD
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:0140547	acquisition of seed longevity	IEA	AHRD
BP	GO:1900865	chloroplast RNA modification	IEA	AHRD
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000325	plant-type vacuole	IEP	Predict GO terms from Neighborhoods
MF	GO:0001653	peptide receptor activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0001763	morphogenesis of a branching structure	IEP	Predict GO terms from Neighborhoods
BP	GO:0002221	pattern recognition receptor signaling pathway	IEP	Predict GO terms from Neighborhoods
MF	GO:0004029	aldehyde dehydrogenase (NAD+) activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004030	aldehyde dehydrogenase [NAD(P)+] activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0006081	cellular aldehyde metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006714	sesquiterpenoid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006970	response to osmotic stress	IEP	Predict GO terms from Neighborhoods
BP	GO:0008300	isoprenoid catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009269	response to desiccation	IEP	Predict GO terms from Neighborhoods
BP	GO:0009651	response to salt stress	IEP	Predict GO terms from Neighborhoods
BP	GO:0009687	abscisic acid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009737	response to abscisic acid	IEP	Predict GO terms from Neighborhoods
BP	GO:0009838	abscission	IEP	Predict GO terms from Neighborhoods
BP	GO:0009934	regulation of meristem structural organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0009960	endosperm development	IEP	Predict GO terms from Neighborhoods
BP	GO:0009962	regulation of flavonoid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010065	primary meristem tissue development	IEP	Predict GO terms from Neighborhoods
BP	GO:0010067	procambium histogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0010078	maintenance of root meristem identity	IEP	Predict GO terms from Neighborhoods
BP	GO:0010082	regulation of root meristem growth	IEP	Predict GO terms from Neighborhoods
BP	GO:0010088	phloem development	IEP	Predict GO terms from Neighborhoods
BP	GO:0010183	pollen tube guidance	IEP	Predict GO terms from Neighborhoods
BP	GO:0010223	secondary shoot formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0010227	floral organ abscission	IEP	Predict GO terms from Neighborhoods
BP	GO:0010346	shoot axis formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0010555	response to mannitol	IEP	Predict GO terms from Neighborhoods
BP	GO:0016107	sesquiterpenoid catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0016115	terpenoid catabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0016620	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	IEP	Predict GO terms from Neighborhoods
MF	GO:0016903	oxidoreductase activity, acting on the aldehyde or oxo group of donors	IEP	Predict GO terms from Neighborhoods
MF	GO:0017046	peptide hormone binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0018105	peptidyl-serine phosphorylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0018209	peptidyl-serine modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0031537	regulation of anthocyanin metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0031540	regulation of anthocyanin biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0031663	lipopolysaccharide-mediated signaling pathway	IEP	Predict GO terms from Neighborhoods
MF	GO:0033612	receptor serine/threonine kinase binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0036289	peptidyl-serine autophosphorylation	IEP	Predict GO terms from Neighborhoods
MF	GO:0042562	hormone binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0043288	apocarotenoid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0043290	apocarotenoid catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0045490	pectin catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046164	alcohol catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046345	abscisic acid catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0048507	meristem development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048508	embryonic meristem development	IEP	Predict GO terms from Neighborhoods
BP	GO:0050829	defense response to Gram-negative bacterium	IEP	Predict GO terms from Neighborhoods
BP	GO:0050918	positive chemotaxis	IEP	Predict GO terms from Neighborhoods
MF	GO:0051427	hormone receptor binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0051428	peptide hormone receptor binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0060866	leaf abscission	IEP	Predict GO terms from Neighborhoods
BP	GO:0071705	nitrogen compound transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0072329	monocarboxylic acid catabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0080043	quercetin 3-O-glucosyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0080044	quercetin 7-O-glucosyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0080045	quercetin 3'-O-glucosyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0080046	quercetin 4'-O-glucosyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0080113	regulation of seed growth	IEP	Predict GO terms from Neighborhoods
BP	GO:0090548	response to nitrate starvation	IEP	Predict GO terms from Neighborhoods
BP	GO:0097305	response to alcohol	IEP	Predict GO terms from Neighborhoods
BP	GO:0120256	olefinic compound catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901141	regulation of lignin biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901333	positive regulation of lateral root development	IEP	Predict GO terms from Neighborhoods
BP	GO:1901616	organic hydroxy compound catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1902025	nitrate import	IEP	Predict GO terms from Neighborhoods
BP	GO:1902644	tertiary alcohol metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1903338	regulation of cell wall organization or biogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:2000023	regulation of lateral root development	IEP	Predict GO terms from Neighborhoods
BP	GO:2000069	regulation of post-embryonic root development	IEP	Predict GO terms from Neighborhoods
BP	GO:2000652	regulation of secondary cell wall biogenesis	IEP	Predict GO terms from Neighborhoods

No InterPro domains available for this sequence

External Links

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SOLTUB.AGRIA.G00000037468

Expression Profile

Co-expression Networks

Functional Annotation