SOLTUB.AGRIA.G00000003762

Description : Proline--tRNA ligase

Gene families : OG_02_0007674 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

OG_02_0014667

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000003762
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_187

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004812	aminoacyl-tRNA ligase activity	None	Extended
MF	GO:0004827	proline-tRNA ligase activity	IEA	AHRD
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005739	mitochondrion	IEA	AHRD
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006399	tRNA metabolic process	None	Extended
BP	GO:0006418	tRNA aminoacylation for protein translation	None	Extended
BP	GO:0006433	prolyl-tRNA aminoacylation	IEA	AHRD
BP	GO:0006520	cellular amino acid metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0007275	multicellular organism development	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
CC	GO:0009532	plastid stroma	None	Extended
BP	GO:0009553	embryo sac development	IEA	AHRD
CC	GO:0009570	chloroplast stroma	IEA	AHRD
BP	GO:0009791	post-embryonic development	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010109	regulation of photosynthesis	IEA	AHRD
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016874	ligase activity	None	Extended
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
CC	GO:0017101	aminoacyl-tRNA synthetase multienzyme complex	IEA	AHRD
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0043038	amino acid activation	None	Extended
BP	GO:0043039	tRNA aminoacylation	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048229	gametophyte development	None	Extended
BP	GO:0048316	seed development	IEA	AHRD
BP	GO:0048481	plant ovule development	IEA	AHRD
BP	GO:0048608	reproductive structure development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
BP	GO:0099402	plant organ development	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140101	catalytic activity, acting on a tRNA	None	Extended
CC	GO:0140535	intracellular protein-containing complex	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
CC	GO:1902494	catalytic complex	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000311	plastid large ribosomal subunit	IEP	Predict GO terms from Neighborhoods
CC	GO:0000315	organellar large ribosomal subunit	IEP	Predict GO terms from Neighborhoods
MF	GO:0003723	RNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0003727	single-stranded RNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0003729	mRNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0003735	structural constituent of ribosome	IEP	Predict GO terms from Neighborhoods
MF	GO:0003746	translation elongation factor activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0003747	translation release factor activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004017	adenylate kinase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004047	aminomethyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004127	cytidylate kinase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004550	nucleoside diphosphate kinase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004807	triose-phosphate isomerase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004823	leucine-tRNA ligase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004829	threonine-tRNA ligase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005198	structural molecule activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005504	fatty acid binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0005527	macrolide binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0005528	FK506 binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0005840	ribosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0005960	glycine cleavage complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0006071	glycerol metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006165	nucleoside diphosphate phosphorylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006412	translation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006415	translational termination	IEP	Predict GO terms from Neighborhoods
BP	GO:0006429	leucyl-tRNA aminoacylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006435	threonyl-tRNA aminoacylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006518	peptide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006544	glycine metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006546	glycine catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006553	lysine metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006616	SRP-dependent cotranslational protein targeting to membrane, translocation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006642	triglyceride mobilization	IEP	Predict GO terms from Neighborhoods
BP	GO:0006730	one-carbon metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0008079	translation termination factor activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008124	4-alpha-hydroxytetrahydrobiopterin dehydratase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008135	translation factor activity, RNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0008187	poly-pyrimidine tract binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0008266	poly(U) RNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0008320	protein transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008839	4-hydroxy-tetrahydrodipicolinate reductase	IEP	Predict GO terms from Neighborhoods
MF	GO:0008929	methylglyoxal synthase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009059	macromolecule biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009071	serine family amino acid catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009085	lysine biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009089	lysine biosynthetic process via diaminopimelate	IEP	Predict GO terms from Neighborhoods
BP	GO:0009117	nucleotide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009132	nucleoside diphosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009141	nucleoside triphosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009144	purine nucleoside triphosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009199	ribonucleoside triphosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009205	purine ribonucleoside triphosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009438	methylglyoxal metabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0009526	plastid envelope	IEP	Predict GO terms from Neighborhoods
CC	GO:0009535	chloroplast thylakoid membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0009579	thylakoid	IEP	Predict GO terms from Neighborhoods
CC	GO:0009654	photosystem II oxygen evolving complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0009941	chloroplast envelope	IEP	Predict GO terms from Neighborhoods
MF	GO:0009977	proton motive force dependent protein transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0010207	photosystem II assembly	IEP	Predict GO terms from Neighborhoods
CC	GO:0010598	NAD(P)H dehydrogenase complex (plastoquinone)	IEP	Predict GO terms from Neighborhoods
BP	GO:0015031	protein transport	IEP	Predict GO terms from Neighborhoods
CC	GO:0015934	large ribosomal subunit	IEP	Predict GO terms from Neighborhoods
BP	GO:0015979	photosynthesis	IEP	Predict GO terms from Neighborhoods
MF	GO:0016149	translation release factor activity, codon specific	IEP	Predict GO terms from Neighborhoods
MF	GO:0016742	hydroxymethyl-, formyl- and related transferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016853	isomerase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016859	cis-trans isomerase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016861	intramolecular oxidoreductase activity, interconverting aldoses and ketoses	IEP	Predict GO terms from Neighborhoods
BP	GO:0017038	protein import	IEP	Predict GO terms from Neighborhoods
BP	GO:0019242	methylglyoxal biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019253	reductive pentose-phosphate cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:0019400	alditol metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019405	alditol catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019464	glycine decarboxylation via glycine cleavage system	IEP	Predict GO terms from Neighborhoods
BP	GO:0019563	glycerol catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019682	glyceraldehyde-3-phosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019684	photosynthesis, light reaction	IEP	Predict GO terms from Neighborhoods
BP	GO:0019685	photosynthesis, dark reaction	IEP	Predict GO terms from Neighborhoods
MF	GO:0019843	rRNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0019877	diaminopimelate biosynthetic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0022626	cytosolic ribosome	IEP	Predict GO terms from Neighborhoods
MF	GO:0022884	macromolecule transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0031090	organelle membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0031360	intrinsic component of thylakoid membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0031361	integral component of thylakoid membrane	IEP	Predict GO terms from Neighborhoods
MF	GO:0031405	lipoic acid binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0031967	organelle envelope	IEP	Predict GO terms from Neighborhoods
CC	GO:0031975	envelope	IEP	Predict GO terms from Neighborhoods
CC	GO:0031977	thylakoid lumen	IEP	Predict GO terms from Neighborhoods
BP	GO:0032504	multicellular organism reproduction	IEP	Predict GO terms from Neighborhoods
BP	GO:0032594	protein transport within lipid bilayer	IEP	Predict GO terms from Neighborhoods
CC	GO:0033281	TAT protein transport complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0033614	chloroplast proton-transporting ATP synthase complex assembly	IEP	Predict GO terms from Neighborhoods
CC	GO:0034357	photosynthetic membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0042170	plastid membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0042651	thylakoid membrane	IEP	Predict GO terms from Neighborhoods
MF	GO:0043023	ribosomal large subunit binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0043043	peptide biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0043461	proton-transporting ATP synthase complex assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0043603	cellular amide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0043604	amide biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0043933	protein-containing complex organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0043953	protein transport by the Tat complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0044391	ribosomal subunit	IEP	Predict GO terms from Neighborhoods
BP	GO:0045036	protein targeting to chloroplast	IEP	Predict GO terms from Neighborhoods
BP	GO:0045037	protein import into chloroplast stroma	IEP	Predict GO terms from Neighborhoods
BP	GO:0045038	protein import into chloroplast thylakoid membrane	IEP	Predict GO terms from Neighborhoods
MF	GO:0045182	translation regulator activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0046034	ATP metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046166	glyceraldehyde-3-phosphate biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046174	polyol catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046451	diaminopimelate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046939	nucleotide phosphorylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0046940	nucleoside monophosphate phosphorylation	IEP	Predict GO terms from Neighborhoods
MF	GO:0050145	nucleoside monophosphate kinase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0050665	hydrogen peroxide biosynthetic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0055035	plastid thylakoid membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0065002	intracellular protein transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0070071	proton-transporting two-sector ATPase complex assembly	IEP	Predict GO terms from Neighborhoods
CC	GO:0071781	endoplasmic reticulum cisternal network	IEP	Predict GO terms from Neighborhoods
BP	GO:0071806	protein transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0072596	establishment of protein localization to chloroplast	IEP	Predict GO terms from Neighborhoods
BP	GO:0072598	protein localization to chloroplast	IEP	Predict GO terms from Neighborhoods
CC	GO:0085035	haustorium	IEP	Predict GO terms from Neighborhoods
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0097009	energy homeostasis	IEP	Predict GO terms from Neighborhoods
CC	GO:0098796	membrane protein complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0098807	chloroplast thylakoid membrane protein complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0110102	ribulose bisphosphate carboxylase complex assembly	IEP	Predict GO terms from Neighborhoods
MF	GO:0140318	protein transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1901259	chloroplast rRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1902290	positive regulation of defense response to oomycetes	IEP	Predict GO terms from Neighborhoods
BP	GO:1903409	reactive oxygen species biosynthetic process	IEP	Predict GO terms from Neighborhoods
CC	GO:1990204	oxidoreductase complex	IEP	Predict GO terms from Neighborhoods
CC	GO:1990904	ribonucleoprotein complex	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR002314	aa-tRNA-synt_IIb	164	333
IPR016061	Pro-tRNA_ligase_II_C	481	547
IPR017449	Pro-tRNA_synth_II	475	547
IPR004499	Pro-tRNA-ligase_IIa_arc-type	71	547
IPR004154	Anticodon-bd	352	453

External Links

No external refs found!

SOLTUB.AGRIA.G00000003762

Expression Profile

Co-expression Networks

Functional Annotation