SOLTUB.AGRIA.G00000037615

Description : Katanin p60 ATPase-containing subunit A1

Gene families : OG_02_0000578 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000037615
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_192

Type	GO Term	Name	Evidence	Source
CC	GO:0000151	ubiquitin ligase complex	None	Extended
MF	GO:0000166	nucleotide binding	None	Extended
BP	GO:0000226	microtubule cytoskeleton organization	None	Extended
BP	GO:0000278	mitotic cell cycle	IEA	AHRD
BP	GO:0000902	cell morphogenesis	None	Extended
BP	GO:0000904	cell morphogenesis involved in differentiation	None	Extended
CC	GO:0000922	spindle pole	None	Extended
BP	GO:0001578	microtubule bundle formation	IEA	AHRD
BP	GO:0001764	neuron migration	IEA	AHRD
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	AHRD
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
MF	GO:0005524	ATP binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	AHRD
CC	GO:0005737	cytoplasm	IEA	AHRD
CC	GO:0005811	lipid droplet	IEA	AHRD
CC	GO:0005813	centrosome	IEA	AHRD
CC	GO:0005815	microtubule organizing center	None	Extended
CC	GO:0005874	microtubule	IEA	AHRD
CC	GO:0005886	plasma membrane	IEA	AHRD
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007010	cytoskeleton organization	None	Extended
BP	GO:0007017	microtubule-based process	None	Extended
BP	GO:0007049	cell cycle	None	Extended
BP	GO:0007276	gamete generation	None	Extended
BP	GO:0007283	spermatogenesis	IEA	AHRD
MF	GO:0008017	microtubule binding	IEA	AHRD
MF	GO:0008092	cytoskeletal protein binding	None	Extended
BP	GO:0008104	protein localization	IEA	AHRD
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008568	microtubule severing ATPase activity	IEA	AHRD
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009825	multidimensional cell growth	IEA	AHRD
BP	GO:0009832	plant-type cell wall biogenesis	IEA	AHRD
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010091	trichome branching	IEA	AHRD
BP	GO:0010975	regulation of neuron projection development	None	Extended
BP	GO:0010977	negative regulation of neuron projection development	IEA	AHRD
MF	GO:0015631	tubulin binding	None	Extended
CC	GO:0016020	membrane	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016049	cell growth	None	Extended
BP	GO:0016477	cell migration	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016853	isomerase activity	IEA	AHRD
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0022414	reproductive process	None	Extended
CC	GO:0030426	growth cone	IEA	AHRD
CC	GO:0030427	site of polarized growth	None	Extended
CC	GO:0030496	midbody	IEA	AHRD
MF	GO:0030554	adenyl nucleotide binding	None	Extended
BP	GO:0030865	cortical cytoskeleton organization	None	Extended
BP	GO:0031122	cytoplasmic microtubule organization	None	Extended
BP	GO:0031344	regulation of cell projection organization	None	Extended
BP	GO:0031345	negative regulation of cell projection organization	None	Extended
CC	GO:0031461	cullin-RING ubiquitin ligase complex	None	Extended
CC	GO:0031463	Cul3-RING ubiquitin ligase complex	IEA	AHRD
BP	GO:0032502	developmental process	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0040007	growth	None	Extended
BP	GO:0042546	cell wall biogenesis	None	Extended
MF	GO:0042802	identical protein binding	IEA	AHRD
CC	GO:0043025	neuronal cell body	IEA	AHRD
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043622	cortical microtubule organization	IEA	AHRD
BP	GO:0044085	cellular component biogenesis	None	Extended
CC	GO:0044297	cell body	None	Extended
MF	GO:0044877	protein-containing complex binding	None	Extended
MF	GO:0046982	protein heterodimerization activity	IEA	AHRD
MF	GO:0046983	protein dimerization activity	None	Extended
BP	GO:0048232	male gamete generation	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0048588	developmental cell growth	None	Extended
BP	GO:0048589	developmental growth	None	Extended
BP	GO:0048609	multicellular organismal reproductive process	None	Extended
BP	GO:0048675	axon extension	IEA	AHRD
BP	GO:0048870	cell motility	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051013	microtubule severing	IEA	AHRD
BP	GO:0051128	regulation of cellular component organization	None	Extended
BP	GO:0051129	negative regulation of cellular component organization	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0060560	developmental growth involved in morphogenesis	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
MF	GO:0070840	dynein complex binding	IEA	AHRD
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071669	plant-type cell wall organization or biogenesis	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0097431	mitotic spindle pole	IEA	AHRD
BP	GO:0097435	supramolecular fiber organization	None	Extended
CC	GO:0099080	supramolecular complex	None	Extended
CC	GO:0099081	supramolecular polymer	None	Extended
CC	GO:0099512	supramolecular fiber	None	Extended
CC	GO:0099513	polymeric cytoskeletal fiber	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:0120035	regulation of plasma membrane bounded cell projection organization	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
CC	GO:0140535	intracellular protein-containing complex	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:0140776	protein-containing complex destabilizing activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
BP	GO:1990138	neuron projection extension	None	Extended
CC	GO:1990234	transferase complex	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000139	Golgi membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0005618	cell wall	IEP	Predict GO terms from Neighborhoods
CC	GO:0005768	endosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0005774	vacuolar membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0005802	trans-Golgi network	IEP	Predict GO terms from Neighborhoods
CC	GO:0005911	cell-cell junction	IEP	Predict GO terms from Neighborhoods
BP	GO:0005975	carbohydrate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0005976	polysaccharide metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0008168	methyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0009505	plant-type cell wall	IEP	Predict GO terms from Neighborhoods
CC	GO:0009506	plasmodesma	IEP	Predict GO terms from Neighborhoods
BP	GO:0010393	galacturonan metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010584	pollen exine formation	IEP	Predict GO terms from Neighborhoods
CC	GO:0016021	integral component of membrane	IEP	Predict GO terms from Neighborhoods
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	Predict GO terms from Neighborhoods
CC	GO:0030054	cell junction	IEP	Predict GO terms from Neighborhoods
CC	GO:0030312	external encapsulating structure	IEP	Predict GO terms from Neighborhoods
CC	GO:0031090	organelle membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0031224	intrinsic component of membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0031410	cytoplasmic vesicle	IEP	Predict GO terms from Neighborhoods
CC	GO:0031982	vesicle	IEP	Predict GO terms from Neighborhoods
CC	GO:0031984	organelle subcompartment	IEP	Predict GO terms from Neighborhoods
BP	GO:0045488	pectin metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0052546	cell wall pectin metabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0070161	anchoring junction	IEP	Predict GO terms from Neighborhoods
CC	GO:0097708	intracellular vesicle	IEP	Predict GO terms from Neighborhoods
CC	GO:0098588	bounding membrane of organelle	IEP	Predict GO terms from Neighborhoods
CC	GO:0098791	Golgi apparatus subcompartment	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR041569	AAA_lid_3	502	532
IPR015415	Vps4_C	544	588
IPR003959	ATPase_AAA_core	345	479
IPR027417	P-loop_NTPase	304	587

External Links

No external refs found!

SOLTUB.AGRIA.G00000037615

Expression Profile

Co-expression Networks

Functional Annotation