SOLTUB.AGRIA.G00000037841

Description : TATA-binding protein-associated factor 2N

Gene families : OG_02_0007271 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000037841
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_197

Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	None	Extended
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	None	Extended
BP	GO:0000398	mRNA splicing, via spliceosome	IEA	AHRD
BP	GO:0001654	eye development	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003682	chromatin binding	IEA	AHRD
MF	GO:0003712	transcription coregulator activity	IEA	AHRD
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003729	mRNA binding	IEA	AHRD
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005667	transcription regulator complex	None	Extended
CC	GO:0005669	transcription factor TFIID complex	IEA	AHRD
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006352	DNA-templated transcription initiation	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	IEA	AHRD
BP	GO:0006367	transcription initiation at RNA polymerase II promoter	IEA	AHRD
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0007423	sensory organ development	None	Extended
BP	GO:0007610	behavior	None	Extended
BP	GO:0007626	locomotory behavior	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008344	adult locomotory behavior	IEA	AHRD
BP	GO:0008345	larval locomotory behavior	IEA	AHRD
BP	GO:0008380	RNA splicing	None	Extended
BP	GO:0008582	regulation of synaptic assembly at neuromuscular junction	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
CC	GO:0009507	chloroplast	IEA	AHRD
CC	GO:0009536	plastid	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010604	positive regulation of macromolecule metabolic process	IEA	AHRD
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0030534	adult behavior	None	Extended
BP	GO:0030537	larval behavior	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031325	positive regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
CC	GO:0036477	somatodendritic compartment	IEA	AHRD
BP	GO:0040008	regulation of growth	None	Extended
MF	GO:0042802	identical protein binding	IEA	AHRD
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044087	regulation of cellular component biogenesis	None	Extended
BP	GO:0044089	positive regulation of cellular component biogenesis	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0045887	positive regulation of synaptic assembly at neuromuscular junction	IEA	AHRD
BP	GO:0045927	positive regulation of growth	None	Extended
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	IEA	AHRD
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048513	animal organ development	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0048638	regulation of developmental growth	None	Extended
BP	GO:0048639	positive regulation of developmental growth	None	Extended
BP	GO:0048749	compound eye development	IEA	AHRD
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050807	regulation of synapse organization	None	Extended
BP	GO:0051094	positive regulation of developmental process	None	Extended
BP	GO:0051128	regulation of cellular component organization	None	Extended
BP	GO:0051130	positive regulation of cellular component organization	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051239	regulation of multicellular organismal process	None	Extended
BP	GO:0051240	positive regulation of multicellular organismal process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051960	regulation of nervous system development	None	Extended
BP	GO:0051962	positive regulation of nervous system development	None	Extended
BP	GO:0051963	regulation of synapse assembly	None	Extended
BP	GO:0051965	positive regulation of synapse assembly	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0090575	RNA polymerase II transcription regulator complex	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1901888	regulation of cell junction assembly	None	Extended
BP	GO:1901890	positive regulation of cell junction assembly	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1904396	regulation of neuromuscular junction development	None	Extended
BP	GO:1904398	positive regulation of neuromuscular junction development	None	Extended
BP	GO:2000026	regulation of multicellular organismal development	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000075	cell cycle checkpoint signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0000077	DNA damage checkpoint signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0000245	spliceosomal complex assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0000389	mRNA 3'-splice site recognition	IEP	Predict GO terms from Neighborhoods
MF	GO:0003684	damaged DNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0003730	mRNA 3'-UTR binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0004034	aldose 1-epimerase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005686	U2 snRNP	IEP	Predict GO terms from Neighborhoods
BP	GO:0006006	glucose metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006012	galactose metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006376	mRNA splice site selection	IEP	Predict GO terms from Neighborhoods
BP	GO:0006415	translational termination	IEP	Predict GO terms from Neighborhoods
BP	GO:0007093	mitotic cell cycle checkpoint signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0009595	detection of biotic stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0016485	protein processing	IEP	Predict GO terms from Neighborhoods
MF	GO:0016854	racemase and epimerase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016857	racemase and epimerase activity, acting on carbohydrates and derivatives	IEP	Predict GO terms from Neighborhoods
BP	GO:0019318	hexose metabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0030532	small nuclear ribonucleoprotein complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0031570	DNA integrity checkpoint signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0031571	mitotic G1 DNA damage checkpoint signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0031663	lipopolysaccharide-mediated signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0032490	detection of molecule of bacterial origin	IEP	Predict GO terms from Neighborhoods
BP	GO:0032496	response to lipopolysaccharide	IEP	Predict GO terms from Neighborhoods
BP	GO:0032497	detection of lipopolysaccharide	IEP	Predict GO terms from Neighborhoods
BP	GO:0032984	protein-containing complex disassembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0034644	cellular response to UV	IEP	Predict GO terms from Neighborhoods
MF	GO:0038187	pattern recognition receptor activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0042770	signal transduction in response to DNA damage	IEP	Predict GO terms from Neighborhoods
BP	GO:0043488	regulation of mRNA stability	IEP	Predict GO terms from Neighborhoods
BP	GO:0043933	protein-containing complex organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0044773	mitotic DNA damage checkpoint signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0044774	mitotic DNA integrity checkpoint signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0044819	mitotic G1/S transition checkpoint signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0045694	regulation of embryo sac egg cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0045930	negative regulation of mitotic cell cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:0071215	cellular response to abscisic acid stimulus	IEP	Predict GO terms from Neighborhoods
CC	GO:0097525	spliceosomal snRNP complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0098581	detection of external biotic stimulus	IEP	Predict GO terms from Neighborhoods
CC	GO:0120114	Sm-like protein family complex	IEP	Predict GO terms from Neighborhoods
BP	GO:1901991	negative regulation of mitotic cell cycle phase transition	IEP	Predict GO terms from Neighborhoods
BP	GO:1902806	regulation of cell cycle G1/S phase transition	IEP	Predict GO terms from Neighborhoods
BP	GO:1902807	negative regulation of cell cycle G1/S phase transition	IEP	Predict GO terms from Neighborhoods
BP	GO:1903241	U2-type prespliceosome assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:2000045	regulation of G1/S transition of mitotic cell cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:2000134	negative regulation of G1/S transition of mitotic cell cycle	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR000504	RRM_dom	15	90
IPR001876	Znf_RanBP2	153	182
IPR035979	RBD_domain_sf	13	102
IPR036443	Znf_RanBP2_sf	147	184

External Links

No external refs found!

SOLTUB.AGRIA.G00000037841

Expression Profile

Co-expression Networks

Functional Annotation