SOLTUB.AGRIA.G00000038079

Description : GATA type zinc finger transcription factor family protein

Gene families : OG_02_0011251 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000038079
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_47

Target	Alias	Description	ECC score	Gene Family Method
SOLTUB.AGRIA.G00000038031	No alias	GATA type zinc finger transcription factor family protein	0.2	Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000038031	No alias	GATA type zinc finger transcription factor family protein	0.2	Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000038031	No alias	GATA type zinc finger transcription factor family protein	0.2	Orthogroups with 8 Potato genotypes

Type	GO Term	Name	Evidence	Source
MF	GO:0000976	transcription cis-regulatory region binding	IEA	AHRD
MF	GO:0001067	transcription regulatory region nucleic acid binding	None	Extended
CC	GO:0001725	stress fiber	IEA	AHRD
CC	GO:0001726	ruffle	IEA	AHRD
BP	GO:0003008	system process	None	Extended
BP	GO:0003279	cardiac septum development	None	Extended
BP	GO:0003281	ventricular septum development	IEA	AHRD
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003690	double-stranded DNA binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003729	mRNA binding	IEA	AHRD
MF	GO:0003779	actin binding	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005654	nucleoplasm	IEA	AHRD
CC	GO:0005829	cytosol	IEA	AHRD
BP	GO:0006629	lipid metabolic process	IEA	AHRD
BP	GO:0006810	transport	None	Extended
BP	GO:0006869	lipid transport	None	Extended
BP	GO:0007015	actin filament organization	None	Extended
MF	GO:0008092	cytoskeletal protein binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015850	organic hydroxy compound transport	None	Extended
BP	GO:0015918	sterol transport	None	Extended
CC	GO:0016020	membrane	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016477	cell migration	IEA	AHRD
BP	GO:0022600	digestive system process	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
CC	GO:0030018	Z disc	IEA	AHRD
BP	GO:0030030	cell projection organization	None	Extended
CC	GO:0030054	cell junction	IEA	AHRD
BP	GO:0030299	intestinal cholesterol absorption	IEA	AHRD
BP	GO:0030301	cholesterol transport	None	Extended
CC	GO:0031253	cell projection membrane	None	Extended
CC	GO:0031526	brush border membrane	IEA	AHRD
BP	GO:0031529	ruffle organization	IEA	AHRD
CC	GO:0032154	cleavage furrow	IEA	AHRD
CC	GO:0032432	actin filament bundle	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0032970	regulation of actin filament-based process	IEA	AHRD
BP	GO:0034330	cell junction organization	None	Extended
BP	GO:0042592	homeostatic process	None	Extended
BP	GO:0042632	cholesterol homeostasis	IEA	AHRD
CC	GO:0042641	actomyosin	None	Extended
MF	GO:0042805	actinin binding	None	Extended
CC	GO:0042995	cell projection	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0043565	sequence-specific DNA binding	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
MF	GO:0044877	protein-containing complex binding	None	Extended
BP	GO:0045216	cell-cell junction organization	IEA	AHRD
MF	GO:0046872	metal ion binding	IEA	AHRD
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	IEA	AHRD
BP	GO:0048523	negative regulation of cellular process	IEA	AHRD
BP	GO:0048729	tissue morphogenesis	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0048870	cell motility	None	Extended
BP	GO:0048878	chemical homeostasis	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050892	intestinal absorption	None	Extended
BP	GO:0050896	response to stimulus	IEA	AHRD
MF	GO:0051015	actin filament binding	IEA	AHRD
BP	GO:0051017	actin filament bundle assembly	IEA	AHRD
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
MF	GO:0051393	alpha-actinin binding	IEA	AHRD
BP	GO:0055008	cardiac muscle tissue morphogenesis	IEA	AHRD
BP	GO:0055088	lipid homeostasis	None	Extended
BP	GO:0055092	sterol homeostasis	None	Extended
BP	GO:0060415	muscle tissue morphogenesis	None	Extended
BP	GO:0061572	actin filament bundle organization	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065008	regulation of biological quality	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097435	supramolecular fiber organization	None	Extended
CC	GO:0097517	contractile actin filament bundle	None	Extended
CC	GO:0098590	plasma membrane region	None	Extended
BP	GO:0098856	intestinal lipid absorption	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
CC	GO:0120025	plasma membrane bounded cell projection	None	Extended
BP	GO:0120036	plasma membrane bounded cell projection organization	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
MF	GO:1990837	sequence-specific double-stranded DNA binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0009624	response to nematode	IEP	Predict GO terms from Neighborhoods
BP	GO:0009627	systemic acquired resistance	IEP	Predict GO terms from Neighborhoods
BP	GO:0009696	salicylic acid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009697	salicylic acid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010167	response to nitrate	IEP	Predict GO terms from Neighborhoods
BP	GO:0010337	regulation of salicylic acid metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0016623	oxidoreductase activity, acting on the aldehyde or oxo group of donors, oxygen as acceptor	IEP	Predict GO terms from Neighborhoods
MF	GO:0016837	carbon-oxygen lyase activity, acting on polysaccharides	IEP	Predict GO terms from Neighborhoods
MF	GO:0016903	oxidoreductase activity, acting on the aldehyde or oxo group of donors	IEP	Predict GO terms from Neighborhoods
MF	GO:0030570	pectate lyase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0045490	pectin catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046189	phenol-containing compound biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0080021	response to benzoic acid	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR001781	Znf_LIM	10	64
IPR001781	Znf_LIM	106	146

External Links

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SOLTUB.AGRIA.G00000038079

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation