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  5. SOLTUB.AGRIA.G00000038245

SOLTUB.AGRIA.G00000038245


Description : RmlC-like cupins superfamily protein


Gene families : OG_02_0017891 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000038245
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_76


Type GO Term Name Evidence Source
CC GO:0000325 plant-type vacuole IEA AHRD
CC GO:0005576 extracellular region IEA AHRD
CC GO:0005618 cell wall IEA AHRD
CC GO:0005886 plasma membrane IEA AHRD
CC GO:0031012 extracellular matrix IEA AHRD
MF GO:0046872 metal ion binding IEA AHRD
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Type GO Term Name Evidence Source
CC GO:0000228 nuclear chromosome IEP Predict GO terms from Neighborhoods
BP GO:0000302 response to reactive oxygen species IEP Predict GO terms from Neighborhoods
CC GO:0000793 condensed chromosome IEP Predict GO terms from Neighborhoods
CC GO:0000794 condensed nuclear chromosome IEP Predict GO terms from Neighborhoods
BP GO:0002252 immune effector process IEP Predict GO terms from Neighborhoods
BP GO:0007165 signal transduction IEP Predict GO terms from Neighborhoods
BP GO:0007602 phototransduction IEP Predict GO terms from Neighborhoods
BP GO:0009581 detection of external stimulus IEP Predict GO terms from Neighborhoods
BP GO:0009582 detection of abiotic stimulus IEP Predict GO terms from Neighborhoods
BP GO:0009583 detection of light stimulus IEP Predict GO terms from Neighborhoods
BP GO:0009585 red, far-red light phototransduction IEP Predict GO terms from Neighborhoods
BP GO:0009639 response to red or far red light IEP Predict GO terms from Neighborhoods
BP GO:0009640 photomorphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0009641 shade avoidance IEP Predict GO terms from Neighborhoods
BP GO:0009694 jasmonic acid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009719 response to endogenous stimulus IEP Predict GO terms from Neighborhoods
BP GO:0009725 response to hormone IEP Predict GO terms from Neighborhoods
BP GO:0009733 response to auxin IEP Predict GO terms from Neighborhoods
BP GO:0009753 response to jasmonic acid IEP Predict GO terms from Neighborhoods
BP GO:0009755 hormone-mediated signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0009864 induced systemic resistance, jasmonic acid mediated signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0010016 shoot system morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0010017 red or far-red light signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0010046 response to mycotoxin IEP Predict GO terms from Neighborhoods
BP GO:0010082 regulation of root meristem growth IEP Predict GO terms from Neighborhoods
BP GO:0010193 response to ozone IEP Predict GO terms from Neighborhoods
BP GO:0010218 response to far red light IEP Predict GO terms from Neighborhoods
BP GO:0010380 regulation of chlorophyll biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0010492 maintenance of shoot apical meristem identity IEP Predict GO terms from Neighborhoods
BP GO:0010496 intercellular transport IEP Predict GO terms from Neighborhoods
MF GO:0015562 efflux transmembrane transporter activity IEP Predict GO terms from Neighborhoods
BP GO:0015692 lead ion transport IEP Predict GO terms from Neighborhoods
BP GO:0015718 monocarboxylic acid transport IEP Predict GO terms from Neighborhoods
MF GO:0016597 amino acid binding IEP Predict GO terms from Neighborhoods
MF GO:0016779 nucleotidyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Predict GO terms from Neighborhoods
MF GO:0016881 acid-amino acid ligase activity IEP Predict GO terms from Neighborhoods
BP GO:0018117 protein adenylylation IEP Predict GO terms from Neighborhoods
BP GO:0018175 protein nucleotidylation IEP Predict GO terms from Neighborhoods
BP GO:0031537 regulation of anthocyanin metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0033993 response to lipid IEP Predict GO terms from Neighborhoods
BP GO:0042221 response to chemical IEP Predict GO terms from Neighborhoods
BP GO:0042752 regulation of circadian rhythm IEP Predict GO terms from Neighborhoods
BP GO:0042908 xenobiotic transport IEP Predict GO terms from Neighborhoods
MF GO:0043177 organic acid binding IEP Predict GO terms from Neighborhoods
BP GO:0046864 isoprenoid transport IEP Predict GO terms from Neighborhoods
BP GO:0046865 terpenoid transport IEP Predict GO terms from Neighborhoods
BP GO:0060688 regulation of morphogenesis of a branching structure IEP Predict GO terms from Neighborhoods
BP GO:0070542 response to fatty acid IEP Predict GO terms from Neighborhoods
MF GO:0070566 adenylyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0070728 leucine binding IEP Predict GO terms from Neighborhoods
BP GO:0071214 cellular response to abiotic stimulus IEP Predict GO terms from Neighborhoods
BP GO:0071365 cellular response to auxin stimulus IEP Predict GO terms from Neighborhoods
BP GO:0071489 cellular response to red or far red light IEP Predict GO terms from Neighborhoods
BP GO:0080022 primary root development IEP Predict GO terms from Neighborhoods
BP GO:0080036 regulation of cytokinin-activated signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0080113 regulation of seed growth IEP Predict GO terms from Neighborhoods
MF GO:0080123 jasmonate-amino synthetase activity IEP Predict GO terms from Neighborhoods
BP GO:0080168 abscisic acid transport IEP Predict GO terms from Neighborhoods
BP GO:0080190 lateral growth IEP Predict GO terms from Neighborhoods
BP GO:0080191 secondary thickening IEP Predict GO terms from Neighborhoods
BP GO:0090056 regulation of chlorophyll metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0090332 stomatal closure IEP Predict GO terms from Neighborhoods
MF GO:0102053 (-)-jasmonoyl-isoleucine synthetase activity IEP Predict GO terms from Neighborhoods
MF GO:0102057 jasmonoyl-valine synthetase activity IEP Predict GO terms from Neighborhoods
MF GO:0102058 jasmonoyl-leucine synthetase activity IEP Predict GO terms from Neighborhoods
BP GO:0104004 cellular response to environmental stimulus IEP Predict GO terms from Neighborhoods
MF GO:0140359 ABC-type transporter activity IEP Predict GO terms from Neighborhoods
BP GO:1901401 regulation of tetrapyrrole metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1901463 regulation of tetrapyrrole biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:1901700 response to oxygen-containing compound IEP Predict GO terms from Neighborhoods
BP GO:1905428 regulation of plant organ formation IEP Predict GO terms from Neighborhoods
BP GO:1990110 callus formation IEP Predict GO terms from Neighborhoods
BP GO:2000032 regulation of secondary shoot formation IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR012337 RNaseH-like_sf 19 95
IPR011051 RmlC_Cupin_sf 269 348
IPR006045 Cupin_1 300 348
No external refs found!