Coexpression cluster: Cluster_76 (HCCA Clusters (HRR 50 & PCC 0.5))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0009823 cytokinin catabolic process 5.48% (4/73) 7.89 0.0 1e-06
GO:0019139 cytokinin dehydrogenase activity 5.48% (4/73) 7.89 0.0 1e-06
GO:0033678 5'-3' DNA/RNA helicase activity 5.48% (4/73) 7.48 0.0 1e-06
GO:0035649 Nrd1 complex 5.48% (4/73) 7.48 0.0 1e-06
GO:0060257 negative regulation of flocculation 5.48% (4/73) 7.48 0.0 1e-06
GO:0060566 positive regulation of termination of DNA-templated transcription 5.48% (4/73) 7.48 0.0 1e-06
GO:1990248 regulation of transcription from RNA polymerase II promoter in response to DNA damage 5.48% (4/73) 7.48 0.0 1e-06
GO:0060256 regulation of flocculation 5.48% (4/73) 7.26 0.0 1e-06
GO:0042447 hormone catabolic process 5.48% (4/73) 6.98 0.0 3e-06
GO:0008131 primary amine oxidase activity 5.48% (4/73) 6.74 0.0 5e-06
GO:0033677 DNA/RNA helicase activity 5.48% (4/73) 6.61 0.0 7e-06
GO:0031554 regulation of termination of DNA-templated transcription 5.48% (4/73) 6.36 0.0 1.3e-05
GO:0043139 5'-3' DNA helicase activity 5.48% (4/73) 6.31 0.0 1.4e-05
GO:0022408 negative regulation of cell-cell adhesion 5.48% (4/73) 6.26 0.0 1.5e-05
GO:0006283 transcription-coupled nucleotide-excision repair 5.48% (4/73) 6.21 0.0 1.6e-05
GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor 5.48% (4/73) 6.11 0.0 2e-05
GO:0031126 sno(s)RNA 3'-end processing 5.48% (4/73) 6.02 0.0 2.5e-05
GO:0043243 positive regulation of protein-containing complex disassembly 5.48% (4/73) 5.86 1e-06 3.7e-05
GO:0043144 sno(s)RNA processing 5.48% (4/73) 5.82 1e-06 4e-05
GO:0016180 snRNA processing 5.48% (4/73) 5.78 1e-06 4.2e-05
GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors 5.48% (4/73) 5.67 1e-06 5.4e-05
GO:0016074 sno(s)RNA metabolic process 5.48% (4/73) 5.64 1e-06 5.7e-05
GO:0007162 negative regulation of cell adhesion 5.48% (4/73) 5.61 1e-06 6e-05
GO:0043628 small regulatory ncRNA 3'-end processing 5.48% (4/73) 5.36 3e-06 0.000113
GO:0006378 mRNA polyadenylation 5.48% (4/73) 5.34 3e-06 0.000117
GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors 5.48% (4/73) 5.16 5e-06 0.00016
GO:0044344 cellular response to fibroblast growth factor stimulus 4.11% (3/73) 6.48 5e-06 0.000164
GO:0071774 response to fibroblast growth factor 4.11% (3/73) 6.48 5e-06 0.000164
GO:0016073 snRNA metabolic process 5.48% (4/73) 5.18 5e-06 0.000173
GO:0015085 calcium ion transmembrane transporter activity 6.85% (5/73) 4.35 5e-06 0.000173
GO:0061014 positive regulation of mRNA catabolic process 6.85% (5/73) 4.3 6e-06 0.000181
GO:0045005 DNA-templated DNA replication maintenance of fidelity 5.48% (4/73) 5.09 6e-06 0.000183
GO:0043631 RNA polyadenylation 5.48% (4/73) 5.06 7e-06 0.000189
GO:0031124 mRNA 3'-end processing 5.48% (4/73) 4.96 9e-06 0.000248
GO:0006369 termination of RNA polymerase II transcription 4.11% (3/73) 6.01 1.4e-05 0.00038
GO:0030874 nucleolar chromatin 4.11% (3/73) 5.84 2e-05 0.000484
GO:0022407 regulation of cell-cell adhesion 5.48% (4/73) 4.67 1.9e-05 0.000484
GO:0043618 regulation of transcription from RNA polymerase II promoter in response to stress 5.48% (4/73) 4.67 1.9e-05 0.000484
GO:0005262 calcium channel activity 5.48% (4/73) 4.69 1.8e-05 0.000488
GO:0045454 cell redox homeostasis 5.48% (4/73) 4.57 2.5e-05 0.000604
GO:0005788 endoplasmic reticulum lumen 5.48% (4/73) 4.56 2.6e-05 0.000616
GO:0010103 stomatal complex morphogenesis 5.48% (4/73) 4.39 4.1e-05 0.000941
GO:0006289 nucleotide-excision repair 5.48% (4/73) 4.36 4.5e-05 0.000992
GO:0004528 phosphodiesterase I activity 2.74% (2/73) 7.48 5.1e-05 0.001042
GO:0008311 double-stranded DNA 3'-5' exodeoxyribonuclease activity 2.74% (2/73) 7.48 5.1e-05 0.001042
GO:1903313 positive regulation of mRNA metabolic process 6.85% (5/73) 3.64 5.3e-05 0.001058
GO:0043620 regulation of DNA-templated transcription in response to stress 5.48% (4/73) 4.32 5e-05 0.001059
GO:0090626 plant epidermis morphogenesis 5.48% (4/73) 4.32 5e-05 0.001059
GO:0140097 catalytic activity, acting on DNA 8.22% (6/73) 3.17 5.7e-05 0.001119
GO:0000304 response to singlet oxygen 4.11% (3/73) 5.29 6.3e-05 0.001208
GO:0032574 5'-3' RNA helicase activity 2.74% (2/73) 7.26 7.2e-05 0.001343
GO:0061013 regulation of mRNA catabolic process 6.85% (5/73) 3.52 7.9e-05 0.001457
GO:0031123 RNA 3'-end processing 5.48% (4/73) 4.06 0.0001 0.001804
GO:0006874 cellular calcium ion homeostasis 5.48% (4/73) 4.05 0.000103 0.001825
GO:0003724 RNA helicase activity 5.48% (4/73) 4.04 0.000106 0.001846
GO:0043244 regulation of protein-containing complex disassembly 5.48% (4/73) 3.96 0.000134 0.002283
GO:0003678 DNA helicase activity 5.48% (4/73) 3.95 0.000138 0.002306
GO:0019725 cellular homeostasis 10.96% (8/73) 2.38 0.00015 0.00247
GO:0008309 double-stranded DNA exodeoxyribonuclease activity 2.74% (2/73) 6.74 0.000153 0.002479
GO:0008186 ATP-dependent activity, acting on RNA 5.48% (4/73) 3.89 0.000158 0.00251
GO:0072503 cellular divalent inorganic cation homeostasis 5.48% (4/73) 3.86 0.000171 0.002629
GO:0005657 replication fork 4.11% (3/73) 4.82 0.00017 0.00266
GO:0000956 nuclear-transcribed mRNA catabolic process 5.48% (4/73) 3.81 0.000199 0.002922
GO:0010229 inflorescence development 5.48% (4/73) 3.82 0.000194 0.00294
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay 4.11% (3/73) 4.74 0.000198 0.002953
GO:0006353 DNA-templated transcription termination 4.11% (3/73) 4.7 0.000218 0.003109
GO:0035861 site of double-strand break 4.11% (3/73) 4.7 0.000218 0.003109
GO:0050660 flavin adenine dinucleotide binding 5.48% (4/73) 3.76 0.000225 0.003159
GO:0048731 system development 12.33% (9/73) 2.11 0.000236 0.00327
GO:0055074 calcium ion homeostasis 5.48% (4/73) 3.73 0.000242 0.003297
GO:0005261 cation channel activity 5.48% (4/73) 3.65 0.000304 0.004087
GO:0030155 regulation of cell adhesion 5.48% (4/73) 3.62 0.000325 0.004306
GO:0048507 meristem development 5.48% (4/73) 3.53 0.000418 0.005465
GO:0006402 mRNA catabolic process 5.48% (4/73) 3.51 0.000435 0.005538
GO:0090734 site of DNA damage 4.11% (3/73) 4.36 0.00043 0.005543
GO:0030552 cAMP binding 2.74% (2/73) 5.89 0.000516 0.00648
GO:0030553 cGMP binding 2.74% (2/73) 5.82 0.000576 0.007048
GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity 2.74% (2/73) 5.82 0.000576 0.007048
GO:0008296 3'-5'-exodeoxyribonuclease activity 2.74% (2/73) 5.74 0.00064 0.007723
GO:0008094 ATP-dependent activity, acting on DNA 5.48% (4/73) 3.26 0.000825 0.009714
GO:0009863 salicylic acid mediated signaling pathway 5.48% (4/73) 3.26 0.000825 0.009714
GO:0005216 ion channel activity 5.48% (4/73) 3.24 0.000881 0.01025
GO:0072507 divalent inorganic cation homeostasis 5.48% (4/73) 3.22 0.000925 0.010505
GO:0036464 cytoplasmic ribonucleoprotein granule 6.85% (5/73) 2.75 0.000919 0.010562
GO:1903311 regulation of mRNA metabolic process 6.85% (5/73) 2.71 0.001026 0.010996
GO:0005388 P-type calcium transporter activity 2.74% (2/73) 5.42 0.001004 0.011006
GO:0035770 ribonucleoprotein granule 6.85% (5/73) 2.72 0.000982 0.011022
GO:0006401 RNA catabolic process 5.48% (4/73) 3.18 0.001017 0.01103
GO:0034599 cellular response to oxidative stress 5.48% (4/73) 3.19 0.001002 0.01111
GO:0046873 metal ion transmembrane transporter activity 6.85% (5/73) 2.69 0.001094 0.011599
GO:0140657 ATP-dependent activity 9.59% (7/73) 2.13 0.001111 0.011652
GO:0005223 intracellular cGMP-activated cation channel activity 2.74% (2/73) 5.31 0.001172 0.012148
GO:0005221 intracellular cyclic nucleotide activated cation channel activity 2.74% (2/73) 5.21 0.001352 0.01316
GO:0030551 cyclic nucleotide binding 2.74% (2/73) 5.21 0.001352 0.01316
GO:0043855 cyclic nucleotide-gated ion channel activity 2.74% (2/73) 5.21 0.001352 0.01316
GO:0044403 biological process involved in symbiotic interaction 9.59% (7/73) 2.08 0.001336 0.01342
GO:0009690 cytokinin metabolic process 5.48% (4/73) 3.08 0.001334 0.013535
GO:0070588 calcium ion transmembrane transport 4.11% (3/73) 3.8 0.001328 0.013623
GO:0006281 DNA repair 8.22% (6/73) 2.29 0.001435 0.013825
GO:0031331 positive regulation of cellular catabolic process 6.85% (5/73) 2.59 0.001474 0.014058
GO:0009875 pollen-pistil interaction 2.74% (2/73) 5.11 0.001545 0.014589
GO:0010431 seed maturation 4.11% (3/73) 3.7 0.001648 0.015266
GO:0005217 intracellular ligand-gated ion channel activity 2.74% (2/73) 5.06 0.001646 0.01539
GO:0005741 mitochondrial outer membrane 4.11% (3/73) 3.65 0.001805 0.016555
GO:0033203 DNA helicase A complex 1.37% (1/73) 9.06 0.001868 0.016808
GO:0043601 nuclear replisome 1.37% (1/73) 9.06 0.001868 0.016808
GO:0004386 helicase activity 5.48% (4/73) 2.91 0.002029 0.018094
GO:0009626 plant-type hypersensitive response 6.85% (5/73) 2.46 0.002204 0.018941
GO:0034050 programmed cell death induced by symbiont 6.85% (5/73) 2.46 0.002204 0.018941
GO:0015267 channel activity 5.48% (4/73) 2.88 0.002188 0.019153
GO:0022803 passive transmembrane transporter activity 5.48% (4/73) 2.88 0.002188 0.019153
GO:0008033 tRNA processing 5.48% (4/73) 2.85 0.002384 0.02031
GO:0006979 response to oxidative stress 12.33% (9/73) 1.61 0.002645 0.022335
GO:0071363 cellular response to growth factor stimulus 4.11% (3/73) 3.44 0.002725 0.022805
GO:0140640 catalytic activity, acting on a nucleic acid 9.59% (7/73) 1.89 0.002855 0.023687
GO:0004529 exodeoxyribonuclease activity 2.74% (2/73) 4.64 0.002956 0.024105
GO:0016895 exodeoxyribonuclease activity, producing 5'-phosphomonoesters 2.74% (2/73) 4.64 0.002956 0.024105
GO:0070848 response to growth factor 4.11% (3/73) 3.39 0.002993 0.024196
GO:0031164 contractile vacuolar membrane 2.74% (2/73) 4.61 0.003093 0.024799
GO:0000302 response to reactive oxygen species 8.22% (6/73) 2.04 0.003418 0.02717
GO:0098795 global gene silencing by mRNA cleavage 1.37% (1/73) 8.06 0.003732 0.028254
GO:2000804 regulation of termination of RNA polymerase II transcription, poly(A)-coupled 1.37% (1/73) 8.06 0.003732 0.028254
GO:2000806 positive regulation of termination of RNA polymerase II transcription, poly(A)-coupled 1.37% (1/73) 8.06 0.003732 0.028254
GO:0006816 calcium ion transport 4.11% (3/73) 3.29 0.003637 0.028441
GO:0006284 base-excision repair 2.74% (2/73) 4.48 0.003671 0.028471
GO:0009896 positive regulation of catabolic process 6.85% (5/73) 2.29 0.003623 0.028567
GO:0051702 biological process involved in interaction with symbiont 6.85% (5/73) 2.25 0.004032 0.030284
GO:0015662 P-type ion transporter activity 2.74% (2/73) 4.39 0.004134 0.030573
GO:0140358 P-type transmembrane transporter activity 2.74% (2/73) 4.39 0.004134 0.030573
GO:0009856 pollination 2.74% (2/73) 4.34 0.004457 0.03271
GO:0099094 ligand-gated cation channel activity 2.74% (2/73) 4.31 0.004623 0.033669
GO:0030424 axon 4.11% (3/73) 3.13 0.004937 0.035681
GO:0006875 cellular metal ion homeostasis 5.48% (4/73) 2.51 0.005494 0.03941
GO:0006417 regulation of translation 6.85% (5/73) 2.09 0.006409 0.045632
GO:0006399 tRNA metabolic process 5.48% (4/73) 2.43 0.006634 0.046194
GO:0015276 ligand-gated ion channel activity 2.74% (2/73) 4.04 0.006632 0.04652
GO:0022834 ligand-gated channel activity 2.74% (2/73) 4.04 0.006632 0.04652
GO:0005516 calmodulin binding 5.48% (4/73) 2.42 0.00675 0.046662
GO:0034754 cellular hormone metabolic process 5.48% (4/73) 2.41 0.006867 0.047132
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_85 0.027 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_89 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_91 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_99 0.014 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_101 0.012 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_106 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_114 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_125 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_126 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_129 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_131 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_132 0.01 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_133 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_136 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_143 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_148 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_149 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_161 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_166 0.01 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_170 0.01 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_178 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_191 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_198 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_205 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_215 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_232 0.011 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_253 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_266 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_319 0.014 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_329 0.015 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_390 0.015 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_3 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_11 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_23 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_24 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_28 0.015 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_29 0.013 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_33 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_38 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_43 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_48 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_52 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_58 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_64 0.008 Orthogroups with 8 Potato genotypes Compare
Sequences (73) (download table)

InterPro Domains

GO Terms

Family Terms